Wall clock time and date at job start Wed Apr 1 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00274 * 2 1 4 4 H 1.07994 * 119.99978 * 322.21327 * 3 2 1 5 5 C 1.38811 * 119.99934 * 142.20889 * 3 2 1 6 6 N 1.31622 * 119.99451 * 155.93177 * 5 3 2 7 7 Si 1.86802 * 120.00252 * 335.93101 * 5 3 2 8 8 H 1.48501 * 109.47112 * 92.28308 * 7 5 3 9 9 H 1.48499 * 109.47085 * 212.28542 * 7 5 3 10 10 H 1.48498 * 109.46908 * 332.28326 * 7 5 3 11 11 C 1.46507 * 119.99976 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47191 * 89.99887 * 11 2 1 13 13 C 1.53009 * 109.47090 * 180.02562 * 12 11 2 14 14 N 1.46503 * 109.46994 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99903 * 269.99527 * 14 13 12 16 16 C 1.34774 * 119.99772 * 90.00202 * 14 13 12 17 17 O 1.21483 * 120.00389 * 3.13530 * 16 14 13 18 18 C 1.48346 * 119.99719 * 183.13496 * 16 14 13 19 19 C 1.41885 * 126.84360 * 174.43104 * 18 16 14 20 20 C 1.36734 * 103.81777 * 179.97438 * 19 18 16 21 21 C 1.47861 * 126.81818 * 179.97438 * 20 19 18 22 22 C 1.41035 * 126.07000 * 180.02562 * 21 20 19 23 23 C 1.35003 * 107.84778 * 180.02562 * 22 21 20 24 24 N 1.35095 * 108.03189 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.90770 * 180.02562 * 24 23 22 26 26 N 1.31825 * 126.06302 * 359.69356 * 21 20 19 27 27 O 1.34449 * 106.36566 * 0.02562 * 20 19 18 28 28 N 1.20879 * 111.73719 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.46837 * 265.09892 * 1 2 3 30 30 H 1.08999 * 109.47221 * 25.10111 * 1 2 3 31 31 H 1.09006 * 109.47122 * 145.10058 * 1 2 3 32 32 H 0.97005 * 119.99115 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47157 * 329.99308 * 11 2 1 34 34 H 1.09005 * 109.46584 * 209.99865 * 11 2 1 35 35 H 1.08993 * 109.47743 * 60.00014 * 12 11 2 36 36 H 1.09005 * 109.47339 * 299.99516 * 12 11 2 37 37 H 1.09000 * 109.46561 * 59.99699 * 13 12 11 38 38 H 1.08992 * 109.46747 * 299.99691 * 13 12 11 39 39 H 1.08996 * 109.47666 * 264.41064 * 15 14 13 40 40 H 1.09004 * 109.47005 * 24.40969 * 15 14 13 41 41 H 1.09003 * 109.46937 * 144.40685 * 15 14 13 42 42 H 1.08001 * 128.09448 * 0.02949 * 19 18 16 43 43 H 1.08006 * 126.07354 * 359.97438 * 22 21 20 44 44 H 1.07999 * 125.98524 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.46836 * 90.00403 * 25 24 23 46 46 H 1.08999 * 109.46564 * 210.00479 * 25 24 23 47 47 H 1.08995 * 109.47045 * 330.00013 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7796 2.0231 -0.5731 5 6 3.3195 1.3119 0.7367 6 7 4.2152 2.2154 0.3996 7 14 3.6222 0.1992 2.2063 8 1 4.3775 -1.0026 1.7700 9 1 4.4088 0.9338 3.2295 10 1 2.3210 -0.2179 2.7877 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2169 -3.0352 -1.4437 14 7 3.4605 -3.4579 -2.8252 15 6 2.4833 -4.3032 -3.5157 16 6 4.5837 -3.0691 -3.4607 17 8 5.4207 -2.4161 -2.8701 18 6 4.7978 -3.4387 -4.8813 19 6 5.8638 -3.0188 -5.7183 20 6 5.6015 -3.6304 -6.9127 21 6 6.4029 -3.5354 -8.1517 22 6 6.1169 -4.1734 -9.3766 23 6 7.0848 -3.8355 -10.2550 24 7 7.9544 -3.0163 -9.6243 25 6 9.1532 -2.4167 -10.2157 26 7 7.5081 -2.8344 -8.3092 27 8 4.4695 -4.3345 -6.7374 28 7 4.0398 -4.2185 -5.6135 29 1 -0.3633 -0.0878 1.0239 30 1 -0.3633 0.9306 -0.4359 31 1 -0.3634 -0.8429 -0.5880 32 1 5.0328 2.3032 0.9142 33 1 1.6085 -2.0286 0.5130 34 1 3.1499 -1.1386 0.5133 35 1 3.0415 -0.9501 -1.9568 36 1 1.5000 -1.8400 -1.9571 37 1 2.6274 -3.7948 -0.9303 38 1 4.1693 -2.9055 -0.9298 39 1 2.7806 -5.3481 -3.4282 40 1 1.5008 -4.1659 -3.0641 41 1 2.4414 -4.0242 -4.5686 42 1 6.6898 -2.3689 -5.4698 43 1 5.2740 -4.8185 -9.5761 44 1 7.1517 -4.1621 -11.2822 45 1 8.8975 -1.4536 -10.6575 46 1 9.9070 -2.2727 -9.4416 47 1 9.5470 -3.0777 -10.9877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502339100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:43 Heat of formation + Delta-G solvation = 157.913709 kcal Electronic energy + Delta-G solvation = -29640.077958 eV Core-core repulsion = 25444.538486 eV Total energy + Delta-G solvation = -4195.539471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.21889 -41.57166 -39.70683 -36.45500 -35.42797 -34.59441 -34.08990 -32.10956 -31.67014 -30.90079 -30.57359 -27.28935 -26.98739 -26.52547 -25.81647 -23.97846 -23.54826 -22.25191 -21.35428 -21.18752 -20.53893 -19.08669 -18.03226 -18.01313 -17.18264 -16.70577 -16.67482 -15.94066 -15.78515 -15.43289 -15.13608 -14.91191 -14.28570 -14.21504 -14.04899 -13.52297 -13.45657 -13.36396 -13.24535 -13.15299 -12.99083 -12.93051 -12.75289 -12.45736 -11.97384 -11.84247 -11.45963 -11.29753 -11.21239 -11.00663 -10.79789 -10.76063 -10.58930 -10.41255 -10.34525 -10.06433 -9.67047 -9.44139 -9.40888 -8.89380 -8.58729 -8.39023 -6.72926 -5.91560 -3.31396 0.54839 1.23640 1.59768 1.71372 2.62459 2.66281 2.86667 3.19894 3.39340 3.52962 3.58889 3.76143 4.03310 4.09287 4.39243 4.61438 4.64790 4.72797 4.75835 4.87609 4.93330 5.05779 5.13572 5.21511 5.27889 5.38152 5.43948 5.47038 5.50647 5.72216 5.81981 5.84396 5.94461 5.95426 6.08816 6.17851 6.33122 6.42003 6.43612 6.56184 6.71696 6.75493 6.88654 7.05230 7.13046 7.33839 7.75406 8.12983 8.15622 8.46206 9.07317 9.80095 10.21111 11.24267 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.002174 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.131035 B =12877.455968 C =13834.351836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.611 5.611 3 C -0.273 4.273 4 H 0.076 0.924 5 C 0.038 3.962 6 N -0.896 5.896 7 Si 0.875 3.125 8 H -0.282 1.282 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.140 3.860 12 C -0.147 4.147 13 C 0.114 3.886 14 N -0.598 5.598 15 C 0.072 3.928 16 C 0.590 3.410 17 O -0.508 6.508 18 C -0.013 4.013 19 C -0.138 4.138 20 C 0.038 3.962 21 C 0.139 3.861 22 C -0.245 4.245 23 C 0.058 3.942 24 N -0.365 5.365 25 C 0.099 3.901 26 N -0.257 5.257 27 O 0.129 5.871 28 N -0.321 5.321 29 H 0.005 0.995 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.187 0.813 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 -18.195 -24.338 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.335 5.335 3 C -0.401 4.401 4 H 0.094 0.906 5 C -0.163 4.163 6 N -0.536 5.536 7 Si 0.705 3.295 8 H -0.210 1.210 9 H -0.229 1.229 10 H -0.196 1.196 11 C 0.013 3.987 12 C -0.188 4.188 13 C -0.008 4.008 14 N -0.331 5.331 15 C -0.071 4.071 16 C 0.374 3.626 17 O -0.380 6.380 18 C -0.170 4.170 19 C -0.163 4.163 20 C -0.027 4.027 21 C -0.026 4.026 22 C -0.274 4.274 23 C -0.087 4.087 24 N -0.149 5.149 25 C -0.042 4.042 26 N -0.083 5.083 27 O 0.055 5.945 28 N -0.023 5.023 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.204 0.796 43 H 0.177 0.823 44 H 0.199 0.801 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.462 -17.549 -23.170 29.575 hybrid contribution 0.309 -0.628 0.298 0.761 sum 5.770 -18.177 -22.872 29.780 Atomic orbital electron populations 1.21061 0.84722 0.98949 0.97228 1.44025 1.00706 1.02052 1.86747 1.18744 1.06108 0.90796 1.24473 0.90631 1.25470 0.96636 0.96429 0.97803 1.69902 1.07833 1.36784 1.39109 0.86986 0.77802 0.80093 0.84572 1.20958 1.22888 1.19610 1.21108 0.96573 0.87685 0.93291 1.22496 0.99420 0.95531 1.01343 1.21729 1.01935 0.97148 0.79996 1.47772 1.19999 1.50383 1.14991 1.22100 0.92211 0.94025 0.98729 1.16930 0.82434 0.80176 0.83035 1.90873 1.43509 1.38210 1.65455 1.23455 0.95321 1.00481 0.97766 1.22698 1.00846 1.02569 0.90150 1.20732 0.89827 0.98461 0.93695 1.18800 0.93811 0.98996 0.90948 1.21552 1.04253 1.09626 0.91991 1.22550 0.91246 0.95237 0.99702 1.48575 1.21192 1.37158 1.07932 1.21990 0.84068 0.99096 0.99061 1.77735 1.12598 1.21976 0.96029 1.84867 1.31656 1.52984 1.25038 1.74319 1.19326 1.17488 0.91162 0.97649 0.93725 0.95657 0.92703 0.94454 0.92479 0.90731 0.92815 0.90526 0.89571 0.92491 0.90637 0.89505 0.79554 0.82329 0.80058 0.90178 0.88817 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.62 10.70 59.84 0.64 3.26 16 2 N -0.61 -15.36 2.47 -181.12 -0.45 -15.80 16 3 C -0.27 -8.03 9.87 -15.06 -0.15 -8.18 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 5 C 0.04 1.14 5.27 -17.43 -0.09 1.05 16 6 N -0.90 -28.66 13.97 55.49 0.78 -27.89 16 7 Si 0.88 23.23 25.31 -169.99 -4.30 18.92 16 8 H -0.28 -7.24 6.51 56.52 0.37 -6.87 16 9 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 10 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.14 3.14 4.55 -4.04 -0.02 3.13 16 12 C -0.15 -2.95 5.86 -26.73 -0.16 -3.11 16 13 C 0.11 1.94 5.41 -4.04 -0.02 1.91 16 14 N -0.60 -9.55 2.87 -182.50 -0.52 -10.08 16 15 C 0.07 0.88 9.66 59.85 0.58 1.45 16 16 C 0.59 10.56 7.70 -12.10 -0.09 10.47 16 17 O -0.51 -11.03 16.51 5.38 0.09 -10.94 16 18 C -0.01 -0.19 6.86 -82.62 -0.57 -0.76 16 19 C -0.14 -1.91 10.95 -38.73 -0.42 -2.34 16 20 C 0.04 0.45 7.35 -36.19 -0.27 0.18 16 21 C 0.14 1.50 7.11 -82.87 -0.59 0.91 16 22 C -0.25 -1.90 10.77 -39.67 -0.43 -2.33 16 23 C 0.06 0.33 11.46 -17.26 -0.20 0.13 16 24 N -0.36 -2.72 4.01 -68.21 -0.27 -2.99 16 25 C 0.10 0.31 11.46 59.85 0.69 1.00 16 26 N -0.26 -2.89 12.60 33.36 0.42 -2.46 16 27 O 0.13 1.51 11.20 16.09 0.18 1.69 16 28 N -0.32 -4.22 8.67 33.35 0.29 -3.93 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 31 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 33 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.06 1.43 3.35 -51.93 -0.17 1.25 16 35 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.09 1.64 7.38 -51.93 -0.38 1.25 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 41 H 0.09 1.07 5.35 -51.93 -0.28 0.79 16 42 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 43 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.18 0.26 8.06 -52.49 -0.42 -0.17 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -37.93 397.21 -5.65 -43.58 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.75 Total: -2.88 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.10 Total: 6.79 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.24 Total: -63.15 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.27 Total: -9.25 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.30 Total: 18.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.93 -5.65 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502339100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.495 kcal (2) G-P(sol) polarization free energy of solvation -37.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds