Wall clock time and date at job start Wed Apr 1 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00274 * 2 1 4 4 H 1.07994 * 119.99978 * 322.21327 * 3 2 1 5 5 C 1.38811 * 119.99934 * 142.20889 * 3 2 1 6 6 N 1.31622 * 119.99451 * 155.93177 * 5 3 2 7 7 Si 1.86802 * 120.00252 * 335.93101 * 5 3 2 8 8 H 1.48501 * 109.47112 * 92.28308 * 7 5 3 9 9 H 1.48499 * 109.47085 * 212.28542 * 7 5 3 10 10 H 1.48498 * 109.46908 * 332.28326 * 7 5 3 11 11 C 1.46507 * 119.99976 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47191 * 89.99887 * 11 2 1 13 13 C 1.53009 * 109.47090 * 180.02562 * 12 11 2 14 14 N 1.46503 * 109.46994 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99903 * 269.99527 * 14 13 12 16 16 C 1.34774 * 119.99772 * 90.00202 * 14 13 12 17 17 O 1.21483 * 120.00389 * 3.13530 * 16 14 13 18 18 C 1.48346 * 119.99719 * 183.13496 * 16 14 13 19 19 C 1.41885 * 126.84360 * 174.43104 * 18 16 14 20 20 C 1.36734 * 103.81777 * 179.97438 * 19 18 16 21 21 C 1.47861 * 126.81818 * 179.97438 * 20 19 18 22 22 C 1.41035 * 126.07000 * 180.02562 * 21 20 19 23 23 C 1.35003 * 107.84778 * 180.02562 * 22 21 20 24 24 N 1.35095 * 108.03189 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.90770 * 180.02562 * 24 23 22 26 26 N 1.31825 * 126.06302 * 359.69356 * 21 20 19 27 27 O 1.34449 * 106.36566 * 0.02562 * 20 19 18 28 28 N 1.20879 * 111.73719 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.46837 * 265.09892 * 1 2 3 30 30 H 1.08999 * 109.47221 * 25.10111 * 1 2 3 31 31 H 1.09006 * 109.47122 * 145.10058 * 1 2 3 32 32 H 0.97005 * 119.99115 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47157 * 329.99308 * 11 2 1 34 34 H 1.09005 * 109.46584 * 209.99865 * 11 2 1 35 35 H 1.08993 * 109.47743 * 60.00014 * 12 11 2 36 36 H 1.09005 * 109.47339 * 299.99516 * 12 11 2 37 37 H 1.09000 * 109.46561 * 59.99699 * 13 12 11 38 38 H 1.08992 * 109.46747 * 299.99691 * 13 12 11 39 39 H 1.08996 * 109.47666 * 264.41064 * 15 14 13 40 40 H 1.09004 * 109.47005 * 24.40969 * 15 14 13 41 41 H 1.09003 * 109.46937 * 144.40685 * 15 14 13 42 42 H 1.08001 * 128.09448 * 0.02949 * 19 18 16 43 43 H 1.08006 * 126.07354 * 359.97438 * 22 21 20 44 44 H 1.07999 * 125.98524 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.46836 * 90.00403 * 25 24 23 46 46 H 1.08999 * 109.46564 * 210.00479 * 25 24 23 47 47 H 1.08995 * 109.47045 * 330.00013 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7796 2.0231 -0.5731 5 6 3.3195 1.3119 0.7367 6 7 4.2152 2.2154 0.3996 7 14 3.6222 0.1992 2.2063 8 1 4.3775 -1.0026 1.7700 9 1 4.4088 0.9338 3.2295 10 1 2.3210 -0.2179 2.7877 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2169 -3.0352 -1.4437 14 7 3.4605 -3.4579 -2.8252 15 6 2.4833 -4.3032 -3.5157 16 6 4.5837 -3.0691 -3.4607 17 8 5.4207 -2.4161 -2.8701 18 6 4.7978 -3.4387 -4.8813 19 6 5.8638 -3.0188 -5.7183 20 6 5.6015 -3.6304 -6.9127 21 6 6.4029 -3.5354 -8.1517 22 6 6.1169 -4.1734 -9.3766 23 6 7.0848 -3.8355 -10.2550 24 7 7.9544 -3.0163 -9.6243 25 6 9.1532 -2.4167 -10.2157 26 7 7.5081 -2.8344 -8.3092 27 8 4.4695 -4.3345 -6.7374 28 7 4.0398 -4.2185 -5.6135 29 1 -0.3633 -0.0878 1.0239 30 1 -0.3633 0.9306 -0.4359 31 1 -0.3634 -0.8429 -0.5880 32 1 5.0328 2.3032 0.9142 33 1 1.6085 -2.0286 0.5130 34 1 3.1499 -1.1386 0.5133 35 1 3.0415 -0.9501 -1.9568 36 1 1.5000 -1.8400 -1.9571 37 1 2.6274 -3.7948 -0.9303 38 1 4.1693 -2.9055 -0.9298 39 1 2.7806 -5.3481 -3.4282 40 1 1.5008 -4.1659 -3.0641 41 1 2.4414 -4.0242 -4.5686 42 1 6.6898 -2.3689 -5.4698 43 1 5.2740 -4.8185 -9.5761 44 1 7.1517 -4.1621 -11.2822 45 1 8.8975 -1.4536 -10.6575 46 1 9.9070 -2.2727 -9.4416 47 1 9.5470 -3.0777 -10.9877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502339100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:42 Heat of formation + Delta-G solvation = 131.364001 kcal Electronic energy + Delta-G solvation = -29641.229239 eV Core-core repulsion = 25444.538486 eV Total energy + Delta-G solvation = -4196.690753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -46.28183 -42.15130 -41.08062 -38.21846 -36.95592 -35.48945 -35.03602 -33.96473 -32.93516 -32.36074 -31.18371 -28.43631 -28.02091 -27.69515 -27.60232 -25.36515 -24.44268 -23.62304 -22.61404 -22.22606 -21.84998 -20.17875 -19.07967 -18.88970 -18.81084 -18.25959 -17.50395 -17.33557 -17.17367 -16.56769 -16.40431 -16.06741 -15.72396 -15.33812 -15.09012 -15.00359 -14.90911 -14.66073 -14.40544 -14.23411 -14.00849 -13.87171 -13.76563 -13.56317 -13.40707 -13.26840 -13.05696 -12.74921 -12.58690 -12.40905 -12.34410 -12.19328 -11.86440 -11.77985 -11.73740 -11.55939 -11.50785 -11.36657 -10.63023 -10.11381 -9.91415 -9.53907 -8.78006 -8.24674 -5.61253 -0.39864 0.10797 1.02697 1.05775 1.28457 1.36337 1.49232 1.56329 1.82774 1.95306 1.97869 2.40084 2.59309 2.98535 3.14991 3.43895 3.57014 3.67671 3.72855 3.99435 4.07458 4.14708 4.16655 4.24834 4.37883 4.46369 4.48790 4.59742 4.61414 4.61975 4.64658 4.72284 4.73059 4.76190 4.77542 4.88515 4.94017 5.01030 5.11395 5.17256 5.30001 5.35782 5.45162 5.90824 6.04097 6.04971 6.11956 6.42526 6.66850 6.84486 6.97219 7.61365 8.01988 8.95490 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.002174 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.131035 B =12877.455968 C =13834.351836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.627 5.627 3 C -0.264 4.264 4 H 0.035 0.965 5 C -0.025 4.025 6 N -0.949 5.949 7 Si 0.945 3.055 8 H -0.272 1.272 9 H -0.306 1.306 10 H -0.252 1.252 11 C 0.134 3.866 12 C -0.131 4.131 13 C 0.119 3.881 14 N -0.595 5.595 15 C 0.069 3.931 16 C 0.582 3.418 17 O -0.562 6.562 18 C -0.031 4.031 19 C -0.164 4.164 20 C 0.061 3.939 21 C 0.109 3.891 22 C -0.257 4.257 23 C 0.076 3.924 24 N -0.363 5.363 25 C 0.088 3.912 26 N -0.304 5.304 27 O 0.150 5.850 28 N -0.311 5.311 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.029 0.971 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.177 0.823 43 H 0.178 0.822 44 H 0.232 0.768 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -21.956 -26.196 34.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.351 5.351 3 C -0.394 4.394 4 H 0.052 0.948 5 C -0.221 4.221 6 N -0.592 5.592 7 Si 0.773 3.227 8 H -0.199 1.199 9 H -0.235 1.235 10 H -0.176 1.176 11 C 0.008 3.992 12 C -0.172 4.172 13 C -0.003 4.003 14 N -0.326 5.326 15 C -0.072 4.072 16 C 0.368 3.632 17 O -0.440 6.440 18 C -0.187 4.187 19 C -0.188 4.188 20 C -0.004 4.004 21 C -0.053 4.053 22 C -0.286 4.286 23 C -0.070 4.070 24 N -0.147 5.147 25 C -0.051 4.051 26 N -0.133 5.133 27 O 0.072 5.928 28 N -0.010 5.010 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.195 0.805 43 H 0.196 0.804 44 H 0.249 0.751 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.821 -21.364 -25.016 33.119 hybrid contribution 0.775 0.549 0.591 1.118 sum 4.596 -20.816 -24.426 32.419 Atomic orbital electron populations 1.21199 0.81944 1.00276 0.98658 1.44199 1.02538 1.01395 1.87017 1.18641 1.06112 0.91682 1.23010 0.94759 1.26178 0.96610 0.98704 1.00649 1.70045 1.08685 1.39890 1.40627 0.85853 0.78396 0.78233 0.80195 1.19917 1.23468 1.17574 1.21235 0.95798 0.87538 0.94608 1.22259 0.99846 0.95561 0.99546 1.21641 1.00907 0.96916 0.80871 1.47888 1.19989 1.49968 1.14777 1.22356 0.92283 0.94235 0.98370 1.17350 0.82439 0.79465 0.83961 1.90833 1.45485 1.40777 1.66885 1.23112 0.96572 1.02140 0.96871 1.22661 1.01093 1.03926 0.91166 1.20865 0.89134 0.96707 0.93691 1.18895 0.94306 1.00702 0.91402 1.21907 1.05689 1.10018 0.90986 1.23329 0.89410 0.93074 1.01151 1.48987 1.22041 1.36812 1.06823 1.22372 0.82664 1.00524 0.99546 1.77651 1.13443 1.23360 0.98812 1.84844 1.31354 1.52269 1.24323 1.74286 1.18760 1.16727 0.91264 0.96230 0.94514 0.91882 0.92923 0.89927 0.95279 0.96358 0.90582 0.85688 0.92264 0.90480 0.88140 0.89827 0.80517 0.80418 0.75143 0.89203 0.89577 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.83 10.70 127.77 1.37 6.20 16 2 N -0.63 -30.91 2.47 -726.94 -1.79 -32.70 16 3 C -0.26 -16.06 9.87 84.03 0.83 -15.23 16 4 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 5 C -0.02 -1.56 5.27 84.86 0.45 -1.11 16 6 N -0.95 -63.81 13.97 21.65 0.30 -63.50 16 7 Si 0.95 48.99 25.31 68.60 1.74 50.72 16 8 H -0.27 -13.55 6.51 99.48 0.65 -12.90 16 9 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 10 H -0.25 -12.15 7.11 99.48 0.71 -11.44 16 11 C 0.13 5.75 4.55 86.38 0.39 6.14 16 12 C -0.13 -5.17 5.86 30.59 0.18 -4.99 16 13 C 0.12 3.88 5.41 86.38 0.47 4.35 16 14 N -0.59 -18.55 2.87 -849.61 -2.44 -20.99 16 15 C 0.07 1.48 9.66 127.77 1.23 2.71 16 16 C 0.58 21.75 7.70 86.94 0.67 22.42 16 17 O -0.56 -26.36 16.51 -3.66 -0.06 -26.42 16 18 C -0.03 -0.96 6.86 42.85 0.29 -0.66 16 19 C -0.16 -4.85 10.95 22.82 0.25 -4.60 16 20 C 0.06 1.49 7.35 24.47 0.18 1.67 16 21 C 0.11 2.34 7.11 42.38 0.30 2.64 16 22 C -0.26 -3.44 10.77 22.21 0.24 -3.20 16 23 C 0.08 0.62 11.46 83.45 0.96 1.58 16 24 N -0.36 -4.75 4.01 -369.71 -1.48 -6.23 16 25 C 0.09 0.37 11.46 127.77 1.46 1.84 16 26 N -0.30 -6.90 12.60 -48.35 -0.61 -7.50 16 27 O 0.15 3.39 11.20 67.74 0.76 4.14 16 28 N -0.31 -8.00 8.67 -48.99 -0.42 -8.43 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 1.47 8.00 -2.39 -0.02 1.45 16 31 H 0.06 1.99 8.11 -2.38 -0.02 1.97 16 32 H 0.26 16.72 8.31 -92.70 -0.77 15.95 16 33 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 34 H 0.03 1.43 3.35 -2.38 -0.01 1.42 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.13 2.90 8.07 -2.39 -0.02 2.88 16 38 H 0.06 2.28 7.38 -2.39 -0.02 2.26 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.68 8.03 -2.38 -0.02 1.66 16 41 H 0.08 1.89 5.35 -2.39 -0.01 1.88 16 42 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 43 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.23 -0.62 8.06 -2.91 -0.02 -0.64 16 45 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: -1.00 -90.32 397.21 6.18 -84.13 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.93 Total: 7.04 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 9.27 Total: 19.74 kcal Atomic # 7 Polarization: -132.91 SS G_CDS: -6.45 Total: -139.36 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.70 Total: -22.28 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.74 Total: 50.72 kcal Total: -90.32 6.18 -84.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502339100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.497 kcal (2) G-P(sol) polarization free energy of solvation -90.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds