Wall clock time and date at job start Wed Apr 1 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36939 * 119.99621 * 2 1 4 4 H 1.08000 * 119.99696 * 202.03792 * 3 2 1 5 5 C 1.38807 * 119.99985 * 22.04473 * 3 2 1 6 6 N 1.31622 * 120.00233 * 10.92710 * 5 3 2 7 7 Si 1.86798 * 120.00010 * 190.92902 * 5 3 2 8 8 H 1.48506 * 109.47067 * 94.98526 * 7 5 3 9 9 H 1.48498 * 109.47502 * 214.98141 * 7 5 3 10 10 H 1.48496 * 109.47145 * 334.98764 * 7 5 3 11 11 C 1.46494 * 120.00039 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46943 * 264.68920 * 11 2 1 13 13 H 1.08999 * 109.99754 * 303.29916 * 12 11 2 14 14 C 1.54321 * 109.88381 * 64.40089 * 12 11 2 15 15 C 1.55159 * 103.10423 * 141.69640 * 14 12 11 16 16 C 1.54907 * 101.58215 * 324.41147 * 15 14 12 17 17 N 1.47428 * 104.83306 * 37.00468 * 16 15 14 18 18 C 1.34777 * 125.64619 * 155.91543 * 17 16 15 19 19 O 1.21285 * 120.00027 * 174.82114 * 18 17 16 20 20 C 1.50704 * 120.00086 * 354.81144 * 18 17 16 21 21 H 1.08999 * 109.09252 * 35.44134 * 20 18 17 22 22 C 1.53323 * 109.10777 * 276.39017 * 20 18 17 23 23 C 1.50674 * 107.87506 * 282.27564 * 22 20 18 24 24 C 1.33064 * 130.80133 * 153.08887 * 23 22 20 25 25 N 1.34740 * 108.03528 * 179.36674 * 24 23 22 26 26 C 1.30818 * 109.53832 * 0.02562 * 25 24 23 27 27 N 1.35046 * 108.33957 * 0.21790 * 26 25 24 28 28 C 1.34580 * 131.29987 * 179.32974 * 27 26 25 29 29 O 1.21494 * 120.69744 * 9.32578 * 28 27 26 30 30 N 1.34827 * 118.60169 * 189.29966 * 28 27 26 31 31 H 1.09001 * 109.46682 * 273.70989 * 1 2 3 32 32 H 1.08998 * 109.47212 * 33.71073 * 1 2 3 33 33 H 1.09005 * 109.46696 * 153.71326 * 1 2 3 34 34 H 0.96997 * 120.00134 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.47036 * 144.69145 * 11 2 1 36 36 H 1.08998 * 109.47708 * 24.69264 * 11 2 1 37 37 H 1.09005 * 110.72025 * 23.24508 * 14 12 11 38 38 H 1.09000 * 110.71807 * 260.15552 * 14 12 11 39 39 H 1.09000 * 111.00102 * 82.48305 * 15 14 12 40 40 H 1.09001 * 111.00244 * 206.29671 * 15 14 12 41 41 H 1.08996 * 110.37005 * 155.84907 * 16 15 14 42 42 H 1.09004 * 110.36519 * 278.17064 * 16 15 14 43 43 H 1.08999 * 109.78542 * 41.86996 * 22 20 18 44 44 H 1.08997 * 109.78235 * 162.68119 * 22 20 18 45 45 H 1.08003 * 125.98033 * 359.35288 * 24 23 22 46 46 H 1.08001 * 125.83432 * 180.19127 * 26 25 24 47 47 H 0.96998 * 118.55796 * 191.83063 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1705 1.2202 -0.3510 5 6 1.5317 2.3441 0.4512 6 7 0.3751 2.2726 1.0754 7 14 2.3414 4.0042 0.1724 8 1 1.7971 4.6188 -1.0651 9 1 2.0623 4.8918 1.3298 10 1 3.8083 3.8219 0.0307 11 6 2.1975 -1.2687 -0.0006 12 6 2.5682 -1.6442 1.4356 13 1 3.1466 -0.8417 1.8933 14 6 1.2879 -1.9031 2.2575 15 6 1.6840 -3.1038 3.1568 16 6 2.6024 -3.9135 2.2078 17 7 3.3483 -2.8958 1.4452 18 6 4.5454 -3.0786 0.8537 19 8 5.0254 -2.1983 0.1714 20 6 5.2878 -4.3768 1.0403 21 1 4.5690 -5.1948 1.0881 22 6 6.0719 -4.3218 2.3567 23 6 7.3068 -3.4903 2.1251 24 6 8.0351 -2.7617 2.9674 25 7 9.0534 -2.2160 2.2739 26 6 8.9775 -2.5858 1.0214 27 7 7.8957 -3.3814 0.8780 28 6 7.3842 -3.9988 -0.2029 29 8 7.9991 -4.0263 -1.2504 30 7 6.1753 -4.5866 -0.0987 31 1 -0.3633 0.0665 1.0255 32 1 -0.3633 0.8548 -0.5703 33 1 -0.3633 -0.9215 -0.4551 34 1 -0.0569 3.0819 1.3904 35 1 3.1055 -1.1637 -0.5945 36 1 1.5707 -2.0500 -0.4302 37 1 0.4570 -2.1685 1.6037 38 1 1.0366 -1.0331 2.8641 39 1 2.2312 -2.7682 4.0378 40 1 0.8067 -3.6844 3.4420 41 1 3.2886 -4.5351 2.7830 42 1 2.0048 -4.5289 1.5354 43 1 5.4587 -3.8634 3.1326 44 1 6.3571 -5.3296 2.6586 45 1 7.8433 -2.6305 4.0221 46 1 9.6626 -2.3028 0.2360 47 1 5.8830 -5.1754 -0.8120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505440621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:43 Heat of formation + Delta-G solvation = 48.937289 kcal Electronic energy + Delta-G solvation = -32162.020758 eV Core-core repulsion = 27961.755714 eV Total energy + Delta-G solvation = -4200.265043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.24863 -40.37564 -39.40251 -37.72615 -36.16162 -35.33240 -33.28722 -32.37838 -31.59175 -31.30261 -29.43319 -28.59508 -26.08999 -25.33463 -24.99115 -24.30084 -22.83603 -21.68459 -21.18355 -20.81396 -19.76416 -18.93952 -18.13277 -17.52419 -17.10571 -16.64051 -16.54413 -16.18612 -15.59647 -15.13485 -14.79953 -14.73073 -14.56508 -14.03175 -13.80687 -13.68290 -13.51080 -13.30279 -13.12999 -13.03829 -12.87487 -12.83849 -12.33151 -11.94225 -11.90737 -11.38416 -11.15659 -11.00022 -10.84532 -10.70217 -10.58469 -10.49939 -10.39795 -10.37561 -10.35235 -10.08830 -9.93630 -9.76399 -9.29116 -8.80005 -8.60718 -8.42865 -6.74978 -5.71910 -3.16209 0.98113 1.95245 2.57246 2.62224 2.78598 3.02073 3.15515 3.41360 3.47703 3.51658 4.03981 4.12608 4.22397 4.43116 4.53300 4.56728 4.62365 4.67357 4.92105 4.98266 5.07702 5.14709 5.17050 5.36311 5.40088 5.54568 5.59968 5.64262 5.72527 5.86949 6.01993 6.06055 6.22454 6.27822 6.31184 6.43432 6.47176 6.61507 6.71549 6.79036 6.87389 7.01793 7.38482 7.53291 7.62947 7.71045 7.77889 7.86765 8.19979 8.42158 9.26736 9.88255 10.35901 11.33418 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.003668 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.477163 B = 7631.793265 C = 8753.494292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.248 4.248 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.911 5.911 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.148 3.852 12 C 0.118 3.882 13 H 0.078 0.922 14 C -0.111 4.111 15 C -0.135 4.135 16 C 0.094 3.906 17 N -0.609 5.609 18 C 0.504 3.496 19 O -0.513 6.513 20 C 0.123 3.877 21 H 0.125 0.875 22 C -0.049 4.049 23 C -0.035 4.035 24 C 0.013 3.987 25 N -0.482 5.482 26 C 0.257 3.743 27 N -0.453 5.453 28 C 0.738 3.262 29 O -0.531 6.531 30 N -0.705 5.705 31 H 0.029 0.971 32 H 0.046 0.954 33 H -0.007 1.007 34 H 0.251 0.749 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.180 0.820 46 H 0.219 0.781 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -20.856 6.690 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.378 4.378 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.557 5.557 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.019 3.981 12 C 0.013 3.987 13 H 0.096 0.904 14 C -0.149 4.149 15 C -0.173 4.173 16 C -0.029 4.029 17 N -0.344 5.344 18 C 0.288 3.712 19 O -0.387 6.387 20 C 0.013 3.987 21 H 0.143 0.857 22 C -0.088 4.088 23 C -0.142 4.142 24 C -0.129 4.129 25 N -0.200 5.200 26 C -0.025 4.025 27 N -0.158 5.158 28 C 0.439 3.561 29 O -0.402 6.402 30 N -0.361 5.361 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.011 0.989 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.197 0.803 46 H 0.236 0.764 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.389 -19.652 6.094 21.861 hybrid contribution -0.575 0.328 -0.585 0.883 sum 6.814 -19.324 5.508 21.218 Atomic orbital electron populations 1.20852 0.82429 0.95533 0.99175 1.43925 1.01829 1.00507 1.85579 1.19271 0.97760 0.85218 1.35516 0.91373 1.24970 0.97611 0.98388 0.98552 1.70054 1.17400 1.26901 1.41328 0.86247 0.79074 0.84128 0.77260 1.21544 1.21733 1.20412 1.21126 0.96182 0.88230 0.92536 1.22849 0.90875 0.83989 1.00956 0.90394 1.22556 0.96885 0.97826 0.97619 1.22804 0.99120 0.97550 0.97859 1.22397 0.94867 0.91480 0.94148 1.48928 1.18331 1.14684 1.52492 1.20400 0.80826 0.89294 0.80673 1.90803 1.66563 1.43659 1.37656 1.21079 0.92388 0.98295 0.86943 0.85717 1.20502 0.91642 1.00501 0.96192 1.21262 1.00208 1.07246 0.85457 1.21869 0.93222 0.97588 1.00270 1.70779 1.23298 1.23315 1.02595 1.25338 0.89173 0.91782 0.96251 1.43764 1.23708 1.39564 1.08728 1.15529 0.81457 0.76944 0.82195 1.91023 1.61483 1.61029 1.26666 1.44684 1.15567 1.50811 1.25023 0.95258 0.93513 0.98890 0.93869 0.92718 0.94628 0.90940 0.89660 0.90849 0.90195 0.91147 0.91292 0.86715 0.87717 0.80284 0.76440 0.73670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 7.91 59.85 0.47 4.42 16 2 N -0.60 -14.95 2.76 -181.12 -0.50 -15.45 16 3 C -0.25 -6.99 9.67 -15.06 -0.15 -7.14 16 4 H 0.07 1.99 7.85 -52.49 -0.41 1.58 16 5 C 0.00 0.07 5.14 -17.43 -0.09 -0.02 16 6 N -0.91 -26.11 10.55 55.49 0.59 -25.52 16 7 Si 0.90 22.59 29.57 -169.99 -5.03 17.57 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 11 C 0.15 3.13 5.13 -4.04 -0.02 3.11 16 12 C 0.12 2.10 3.16 -66.70 -0.21 1.89 16 13 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 14 C -0.11 -1.67 5.60 -24.90 -0.14 -1.81 16 15 C -0.14 -1.33 7.09 -24.58 -0.17 -1.50 16 16 C 0.09 0.80 6.37 -2.53 -0.02 0.79 16 17 N -0.61 -8.12 3.08 -162.66 -0.50 -8.62 16 18 C 0.50 7.13 6.53 -10.98 -0.07 7.06 16 19 O -0.51 -10.19 14.89 5.55 0.08 -10.11 16 20 C 0.12 1.08 2.87 -69.23 -0.20 0.88 16 21 H 0.13 0.58 7.24 -51.93 -0.38 0.20 16 22 C -0.05 -0.36 5.78 -27.73 -0.16 -0.52 16 23 C -0.03 -0.40 6.39 -81.46 -0.52 -0.92 16 24 C 0.01 0.15 11.83 -18.07 -0.21 -0.06 16 25 N -0.48 -6.78 11.27 -14.82 -0.17 -6.95 16 26 C 0.26 3.45 12.53 -90.11 -1.13 2.32 16 27 N -0.45 -6.13 2.85 -64.88 -0.19 -6.32 16 28 C 0.74 10.31 7.88 -87.05 -0.69 9.62 16 29 O -0.53 -8.79 17.75 5.37 0.10 -8.70 16 30 N -0.70 -7.39 4.87 -60.08 -0.29 -7.68 16 31 H 0.03 0.73 7.30 -51.93 -0.38 0.35 16 32 H 0.05 1.23 7.12 -51.93 -0.37 0.86 16 33 H -0.01 -0.16 7.81 -51.93 -0.41 -0.56 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.05 1.31 6.59 -51.93 -0.34 0.97 16 36 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 37 H 0.07 1.12 7.24 -51.93 -0.38 0.75 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.35 6.91 -51.93 -0.36 0.00 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.71 7.66 -51.93 -0.40 0.32 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 46 H 0.22 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.42 3.46 8.90 -40.82 -0.36 3.10 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -37.45 378.43 -10.21 -47.66 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.70 Total: 0.31 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: -3.30 Total: 18.11 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.06 Total: -70.54 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.45 -10.21 -47.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505440621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.597 kcal (2) G-P(sol) polarization free energy of solvation -37.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds