Wall clock time and date at job start Wed Apr 1 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46826 * 110.99671 * 2 1 4 4 C 1.53180 * 109.46623 * 172.31615 * 3 2 1 5 5 C 1.52923 * 109.00538 * 57.07236 * 4 3 2 6 6 C 1.53446 * 113.51433 * 175.19782 * 5 4 3 7 7 C 1.53553 * 83.14814 * 271.11217 * 6 5 4 8 8 N 1.46713 * 113.49342 * 76.40534 * 5 4 3 9 9 C 1.34777 * 136.10827 * 268.12344 * 8 5 4 10 10 O 1.21361 * 120.00270 * 354.01579 * 9 8 5 11 11 C 1.49309 * 119.99678 * 174.01257 * 9 8 5 12 12 O 1.21404 * 120.00620 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99678 * 179.97438 * 11 9 8 14 14 C 1.40298 * 120.00048 * 180.02562 * 13 11 9 15 15 C 1.40719 * 126.09573 * 359.97175 * 14 13 11 16 16 N 1.30881 * 108.37282 * 180.02562 * 15 14 13 17 17 N 1.40065 * 108.43558 * 0.02562 * 16 15 14 18 18 C 1.37292 * 126.05483 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00401 * 180.02562 * 18 17 16 20 20 C 1.39016 * 120.00028 * 0.02562 * 18 17 16 21 21 N 1.31279 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47576 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47103 * 120.00642 * 22 20 18 25 25 H 1.48502 * 109.46704 * 240.00168 * 22 20 18 26 26 C 1.35782 * 126.09955 * 179.97438 * 14 13 11 27 27 C 1.52920 * 112.41970 * 305.90128 * 5 4 3 28 28 C 1.46831 * 111.00107 * 235.49949 * 2 1 3 29 29 H 1.08995 * 109.47421 * 60.00336 * 1 2 3 30 30 H 1.09004 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46912 * 299.99875 * 1 2 3 32 32 H 1.08996 * 109.47230 * 52.31455 * 3 2 1 33 33 H 1.09001 * 109.47256 * 292.31469 * 3 2 1 34 34 H 1.09003 * 109.54630 * 297.21641 * 4 3 2 35 35 H 1.09001 * 109.55359 * 176.93056 * 4 3 2 36 36 H 1.09000 * 114.43507 * 157.57688 * 6 5 4 37 37 H 1.08993 * 114.26552 * 24.63641 * 6 5 4 38 38 H 1.08997 * 113.45314 * 219.22579 * 7 6 5 39 39 H 1.09001 * 113.45279 * 88.82612 * 7 6 5 40 40 H 0.97002 * 120.00436 * 0.02562 * 13 11 9 41 41 H 1.07998 * 125.81724 * 0.04986 * 15 14 13 42 42 H 0.97002 * 119.99955 * 180.02562 * 21 20 18 43 43 H 1.08006 * 126.25265 * 0.24586 * 26 14 13 44 44 H 1.09003 * 109.55032 * 173.95870 * 27 5 4 45 45 H 1.09002 * 109.54662 * 294.24707 * 27 5 4 46 46 H 1.09000 * 109.46836 * 307.68619 * 28 2 1 47 47 H 1.09002 * 109.46969 * 67.68505 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3708 0.0000 4 6 3.5143 1.3345 0.1931 5 6 4.1365 0.4798 -0.9118 6 6 5.6707 0.4680 -0.8861 7 6 5.5120 1.6996 -1.7895 8 7 4.2082 1.1620 -2.2087 9 6 3.4233 1.2585 -3.3001 10 8 2.4130 0.5911 -3.3819 11 6 3.7967 2.1866 -4.4084 12 8 4.8076 2.8540 -4.3268 13 7 3.0121 2.2828 -5.5000 14 6 3.3632 3.1545 -6.5417 15 6 4.4991 3.9842 -6.5811 16 7 4.4855 4.6490 -7.7084 17 7 3.3458 4.2730 -8.4307 18 6 2.9770 4.7500 -9.6641 19 1 2.0734 4.3908 -10.1339 20 6 3.7668 5.6954 -10.3083 21 7 4.8655 6.1317 -9.7375 22 14 3.2645 6.3449 -11.9862 23 1 1.9955 5.6991 -12.4075 24 1 3.0698 7.8150 -11.9099 25 1 4.3290 6.0372 -12.9749 26 6 2.6677 3.3480 -7.6917 27 6 3.5144 -0.9150 -0.9903 28 6 1.9953 -0.7764 -1.1297 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5388 1.9351 0.8132 33 1 1.7611 1.8498 -0.9507 34 1 3.7481 0.9005 1.1653 35 1 3.9132 2.3474 0.1389 36 1 6.1233 -0.3926 -1.3787 37 1 6.1040 0.6828 0.0906 38 1 6.2433 1.7427 -2.5966 39 1 5.4378 2.6362 -1.2369 40 1 2.2046 1.7493 -5.5655 41 1 5.2537 4.0594 -5.8122 42 1 5.4164 6.7916 -10.1868 43 1 1.7434 2.8625 -7.9685 44 1 3.9133 -1.4441 -1.8558 45 1 3.7482 -1.4703 -0.0819 46 1 1.5389 -1.7663 -1.1341 47 1 1.7612 -0.2642 -2.0630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001517492297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:25 Heat of formation + Delta-G solvation = 80.286405 kcal Electronic energy + Delta-G solvation = -31060.591211 eV Core-core repulsion = 26861.685568 eV Total energy + Delta-G solvation = -4198.905644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.54830 -40.02432 -38.93120 -37.60432 -37.46565 -34.39228 -33.21281 -31.97662 -31.15750 -30.34934 -29.93084 -28.04683 -26.23566 -25.47333 -24.15145 -23.84034 -23.08106 -21.58716 -21.05281 -20.48071 -19.50454 -18.31962 -17.71804 -17.38383 -16.75670 -16.16239 -15.57626 -15.53021 -15.27465 -15.16612 -14.96674 -14.79126 -14.53545 -14.16892 -13.77494 -13.63044 -13.39392 -13.03875 -13.01406 -12.82291 -12.69095 -12.66263 -12.33377 -11.80707 -11.76545 -11.68110 -11.58310 -11.54272 -11.34273 -11.31858 -11.06308 -10.91667 -10.66750 -10.54471 -10.31242 -10.10447 -9.25624 -9.09620 -8.90907 -8.87760 -8.22295 -8.15073 -6.79949 -6.62575 -4.29758 1.62489 2.32811 2.90710 3.02310 3.08249 3.30191 3.57217 3.69174 3.80012 3.84901 4.04616 4.34232 4.44782 4.51288 4.55587 4.64539 4.93459 4.96126 4.96473 5.03790 5.07473 5.21992 5.24997 5.32162 5.37517 5.42121 5.52559 5.56105 5.64197 5.70860 5.73322 5.75568 5.90234 5.93249 6.02061 6.17768 6.27306 6.35652 6.75309 6.86887 6.91522 6.93461 6.98395 7.14288 7.45127 7.71823 7.82998 8.12627 8.16209 8.48235 8.67860 9.29175 9.57711 10.33297 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002285 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.757065 B =12253.176284 C =12970.468253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.544 5.544 3 C 0.057 3.943 4 C -0.111 4.111 5 C 0.160 3.840 6 C -0.149 4.149 7 C 0.108 3.892 8 N -0.612 5.612 9 C 0.543 3.457 10 O -0.522 6.522 11 C 0.487 3.513 12 O -0.518 6.518 13 N -0.585 5.585 14 C -0.068 4.068 15 C -0.027 4.027 16 N -0.260 5.260 17 N -0.138 5.138 18 C -0.321 4.321 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.078 4.078 27 C -0.106 4.106 28 C 0.011 3.989 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.408 0.592 41 H 0.177 0.823 42 H 0.275 0.725 43 H 0.149 0.851 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -11.059 18.408 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.150 4.150 5 C 0.076 3.924 6 C -0.187 4.187 7 C -0.015 4.015 8 N -0.347 5.347 9 C 0.329 3.671 10 O -0.400 6.400 11 C 0.268 3.732 12 O -0.395 6.395 13 N -0.228 5.228 14 C -0.174 4.174 15 C -0.203 4.203 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.172 4.172 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.229 4.229 27 C -0.145 4.145 28 C -0.116 4.116 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.243 0.757 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.534 -10.116 17.865 20.587 hybrid contribution -1.481 -0.188 -0.965 1.777 sum -3.014 -10.304 16.900 20.021 Atomic orbital electron populations 1.22287 0.87527 1.01815 1.00433 1.61888 1.07424 1.13049 1.44509 1.21998 0.94750 0.89833 1.00522 1.21797 0.95168 0.99956 0.98069 1.22030 0.94969 0.93095 0.82278 1.23548 0.94550 0.99382 1.01231 1.23035 0.84053 0.96910 0.97476 1.49497 1.21838 1.49336 1.14040 1.19927 0.82122 0.82467 0.82606 1.90422 1.25916 1.44879 1.78765 1.19585 0.85207 0.84998 0.83459 1.90637 1.25310 1.44643 1.78896 1.42150 1.25198 1.39936 1.15516 1.17245 1.02341 1.05897 0.91911 1.24130 0.98941 0.98702 0.98480 1.78263 1.03929 1.22738 1.04183 1.44569 1.12851 1.21511 1.11589 1.19973 1.10196 1.23769 0.91434 0.86400 1.25673 0.95010 0.96139 1.00334 1.70216 1.09952 1.22999 1.36196 0.85738 0.79235 0.79008 0.80037 1.18620 1.19852 1.19840 1.21297 1.02345 1.04438 0.94858 1.21662 0.95750 0.94616 1.02450 1.22984 0.94288 0.98740 0.95546 0.95605 0.91596 0.91743 0.90786 0.94837 0.89262 0.90558 0.88448 0.88858 0.88944 0.89365 0.75721 0.80620 0.91397 0.83401 0.91018 0.90242 0.91729 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.58 60.07 0.58 0.84 16 2 N -0.54 -5.88 4.87 -242.80 -1.18 -7.06 16 3 C 0.06 0.60 5.48 -3.77 -0.02 0.58 16 4 C -0.11 -0.98 5.40 -26.68 -0.14 -1.12 16 5 C 0.16 1.56 0.94 -137.20 -0.13 1.43 16 6 C -0.15 -1.11 7.64 -26.21 -0.20 -1.31 16 7 C 0.11 1.10 7.14 -9.05 -0.06 1.03 16 8 N -0.61 -7.70 3.37 -171.99 -0.58 -8.28 16 9 C 0.54 8.46 8.06 -11.65 -0.09 8.36 16 10 O -0.52 -8.43 13.01 5.49 0.07 -8.36 16 11 C 0.49 8.96 7.85 -11.65 -0.09 8.86 16 12 O -0.52 -10.50 12.51 5.45 0.07 -10.43 16 13 N -0.59 -11.16 5.45 -10.46 -0.06 -11.22 16 14 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 15 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 16 N -0.26 -7.47 10.39 30.81 0.32 -7.15 16 17 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 18 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 19 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 20 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.13 11.81 55.50 0.66 -20.47 16 22 Si 0.94 18.68 29.55 -169.99 -5.02 13.66 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 27 C -0.11 -1.08 5.26 -26.68 -0.14 -1.22 16 28 C 0.01 0.13 5.32 -3.77 -0.02 0.11 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.63 7.03 -51.93 -0.36 0.26 16 36 H 0.10 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.09 1.05 7.64 -51.93 -0.40 0.66 16 39 H 0.09 0.81 7.29 -51.93 -0.38 0.43 16 40 H 0.41 6.75 8.29 -40.82 -0.34 6.41 16 41 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 42 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 47 H 0.10 1.46 3.87 -53.96 -0.21 1.25 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -32.35 377.20 -8.22 -40.56 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.60 Total: 11.85 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.53 Total: 5.02 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.89 Total: -57.98 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.14 Total: -18.79 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.35 -8.22 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517492297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.849 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds