Wall clock time and date at job start Wed Apr 1 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46826 * 110.99671 * 2 1 4 4 C 1.53180 * 109.46623 * 172.31615 * 3 2 1 5 5 C 1.52923 * 109.00538 * 57.07236 * 4 3 2 6 6 C 1.53446 * 113.51433 * 175.19782 * 5 4 3 7 7 C 1.53553 * 83.14814 * 271.11217 * 6 5 4 8 8 N 1.46713 * 113.49342 * 76.40534 * 5 4 3 9 9 C 1.34777 * 136.10827 * 268.12344 * 8 5 4 10 10 O 1.21361 * 120.00270 * 354.01579 * 9 8 5 11 11 C 1.49309 * 119.99678 * 174.01257 * 9 8 5 12 12 O 1.21404 * 120.00620 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99678 * 179.97438 * 11 9 8 14 14 C 1.40298 * 120.00048 * 180.02562 * 13 11 9 15 15 C 1.40719 * 126.09573 * 359.97175 * 14 13 11 16 16 N 1.30881 * 108.37282 * 180.02562 * 15 14 13 17 17 N 1.40065 * 108.43558 * 0.02562 * 16 15 14 18 18 C 1.37292 * 126.05483 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00401 * 180.02562 * 18 17 16 20 20 C 1.39016 * 120.00028 * 0.02562 * 18 17 16 21 21 N 1.31279 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47576 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47103 * 120.00642 * 22 20 18 25 25 H 1.48502 * 109.46704 * 240.00168 * 22 20 18 26 26 C 1.35782 * 126.09955 * 179.97438 * 14 13 11 27 27 C 1.52920 * 112.41970 * 305.90128 * 5 4 3 28 28 C 1.46831 * 111.00107 * 235.49949 * 2 1 3 29 29 H 1.08995 * 109.47421 * 60.00336 * 1 2 3 30 30 H 1.09004 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46912 * 299.99875 * 1 2 3 32 32 H 1.08996 * 109.47230 * 52.31455 * 3 2 1 33 33 H 1.09001 * 109.47256 * 292.31469 * 3 2 1 34 34 H 1.09003 * 109.54630 * 297.21641 * 4 3 2 35 35 H 1.09001 * 109.55359 * 176.93056 * 4 3 2 36 36 H 1.09000 * 114.43507 * 157.57688 * 6 5 4 37 37 H 1.08993 * 114.26552 * 24.63641 * 6 5 4 38 38 H 1.08997 * 113.45314 * 219.22579 * 7 6 5 39 39 H 1.09001 * 113.45279 * 88.82612 * 7 6 5 40 40 H 0.97002 * 120.00436 * 0.02562 * 13 11 9 41 41 H 1.07998 * 125.81724 * 0.04986 * 15 14 13 42 42 H 0.97002 * 119.99955 * 180.02562 * 21 20 18 43 43 H 1.08006 * 126.25265 * 0.24586 * 26 14 13 44 44 H 1.09003 * 109.55032 * 173.95870 * 27 5 4 45 45 H 1.09002 * 109.54662 * 294.24707 * 27 5 4 46 46 H 1.09000 * 109.46836 * 307.68619 * 28 2 1 47 47 H 1.09002 * 109.46969 * 67.68505 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3708 0.0000 4 6 3.5143 1.3345 0.1931 5 6 4.1365 0.4798 -0.9118 6 6 5.6707 0.4680 -0.8861 7 6 5.5120 1.6996 -1.7895 8 7 4.2082 1.1620 -2.2087 9 6 3.4233 1.2585 -3.3001 10 8 2.4130 0.5911 -3.3819 11 6 3.7967 2.1866 -4.4084 12 8 4.8076 2.8540 -4.3268 13 7 3.0121 2.2828 -5.5000 14 6 3.3632 3.1545 -6.5417 15 6 4.4991 3.9842 -6.5811 16 7 4.4855 4.6490 -7.7084 17 7 3.3458 4.2730 -8.4307 18 6 2.9770 4.7500 -9.6641 19 1 2.0734 4.3908 -10.1339 20 6 3.7668 5.6954 -10.3083 21 7 4.8655 6.1317 -9.7375 22 14 3.2645 6.3449 -11.9862 23 1 1.9955 5.6991 -12.4075 24 1 3.0698 7.8150 -11.9099 25 1 4.3290 6.0372 -12.9749 26 6 2.6677 3.3480 -7.6917 27 6 3.5144 -0.9150 -0.9903 28 6 1.9953 -0.7764 -1.1297 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.5388 1.9351 0.8132 33 1 1.7611 1.8498 -0.9507 34 1 3.7481 0.9005 1.1653 35 1 3.9132 2.3474 0.1389 36 1 6.1233 -0.3926 -1.3787 37 1 6.1040 0.6828 0.0906 38 1 6.2433 1.7427 -2.5966 39 1 5.4378 2.6362 -1.2369 40 1 2.2046 1.7493 -5.5655 41 1 5.2537 4.0594 -5.8122 42 1 5.4164 6.7916 -10.1868 43 1 1.7434 2.8625 -7.9685 44 1 3.9133 -1.4441 -1.8558 45 1 3.7482 -1.4703 -0.0819 46 1 1.5389 -1.7663 -1.1341 47 1 1.7612 -0.2642 -2.0630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001517492297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:23 Heat of formation + Delta-G solvation = 56.482423 kcal Electronic energy + Delta-G solvation = -31061.623430 eV Core-core repulsion = 26861.685568 eV Total energy + Delta-G solvation = -4199.937862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.53666 -41.74808 -40.44800 -38.92284 -38.32258 -36.10640 -35.04001 -32.84630 -32.32361 -31.95465 -30.87308 -29.87896 -27.23023 -27.04339 -25.60069 -24.65461 -23.89287 -23.02807 -22.50552 -21.66074 -21.30257 -19.66453 -19.30683 -18.55116 -17.95628 -17.48071 -17.18658 -16.88026 -16.52117 -16.18227 -16.04461 -16.01236 -15.63453 -15.36799 -15.31968 -15.07249 -14.88069 -14.55455 -14.19423 -13.67657 -13.56656 -13.53013 -13.44479 -13.40696 -13.07322 -12.96063 -12.94903 -12.66700 -12.44376 -12.36967 -12.22800 -12.04397 -12.01245 -11.85767 -11.65886 -11.10804 -10.94546 -10.90209 -10.40946 -10.17390 -9.86364 -9.15342 -8.65654 -8.51608 -6.29391 0.26627 1.13847 1.26238 1.39778 1.58460 1.69645 2.01382 2.07863 2.37968 2.50321 2.79758 3.01819 3.04869 3.26666 3.43978 3.70105 3.77866 3.84521 4.18678 4.21214 4.31112 4.35494 4.44135 4.48270 4.49551 4.54708 4.59565 4.68780 4.74324 4.80711 4.91958 4.94250 4.95071 4.96133 4.96747 5.02249 5.09919 5.16830 5.20854 5.28089 5.31079 5.35940 5.88650 6.08532 6.12104 6.16321 6.35229 6.40197 6.64104 6.82280 7.07859 7.37992 7.59342 8.47870 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002285 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.757065 B =12253.176284 C =12970.468253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.540 5.540 3 C 0.055 3.945 4 C -0.107 4.107 5 C 0.154 3.846 6 C -0.123 4.123 7 C 0.096 3.904 8 N -0.612 5.612 9 C 0.543 3.457 10 O -0.532 6.532 11 C 0.486 3.514 12 O -0.538 6.538 13 N -0.586 5.586 14 C -0.055 4.055 15 C -0.048 4.048 16 N -0.307 5.307 17 N -0.162 5.162 18 C -0.353 4.353 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.820 5.820 22 Si 1.020 2.980 23 H -0.242 1.242 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.077 4.077 27 C -0.103 4.103 28 C 0.010 3.990 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.000 1.000 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.421 0.579 41 H 0.175 0.825 42 H 0.278 0.722 43 H 0.186 0.814 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -12.351 20.104 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.073 4.073 4 C -0.145 4.145 5 C 0.072 3.928 6 C -0.160 4.160 7 C -0.026 4.026 8 N -0.347 5.347 9 C 0.327 3.673 10 O -0.411 6.411 11 C 0.268 3.732 12 O -0.415 6.415 13 N -0.231 5.231 14 C -0.162 4.162 15 C -0.223 4.223 16 N -0.138 5.138 17 N 0.070 4.930 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.839 3.161 23 H -0.165 1.165 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.228 4.228 27 C -0.142 4.142 28 C -0.117 4.117 29 H 0.027 0.973 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.018 0.982 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.258 0.742 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.203 0.797 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.144 -11.447 19.623 22.818 hybrid contribution -1.300 0.116 -1.288 1.833 sum -3.443 -11.331 18.335 21.827 Atomic orbital electron populations 1.22352 0.87124 1.02370 1.00329 1.61977 1.07891 1.13008 1.43582 1.22067 0.96413 0.89565 0.99280 1.21843 0.93536 1.00448 0.98670 1.22384 0.96866 0.92822 0.80761 1.23529 0.92512 0.97741 1.02251 1.23311 0.82465 0.99056 0.97719 1.49763 1.21926 1.48902 1.14068 1.19292 0.82631 0.82381 0.82965 1.90463 1.26342 1.45219 1.79102 1.20333 0.84389 0.84728 0.83742 1.90617 1.26106 1.45398 1.79396 1.42110 1.26098 1.39809 1.15050 1.17295 1.00993 1.05222 0.92647 1.24217 1.00148 0.99744 0.98219 1.78156 1.05732 1.24492 1.05455 1.44848 1.13070 1.22737 1.12384 1.20698 1.11426 1.24614 0.91635 0.84142 1.26898 0.94485 0.95754 1.04599 1.70379 1.11691 1.24183 1.38526 0.84518 0.79492 0.78075 0.74019 1.16468 1.19648 1.19624 1.21971 1.03101 1.03370 0.94363 1.21656 0.94438 0.94977 1.03083 1.22900 0.95690 0.98542 0.94576 0.97338 0.90766 0.90193 0.89388 0.98203 0.86632 0.89802 0.87898 0.85153 0.90609 0.88067 0.74204 0.80831 0.91185 0.79692 0.91946 0.88034 0.91533 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.58 127.69 1.22 1.71 16 2 N -0.54 -10.73 4.87 -922.09 -4.49 -15.22 16 3 C 0.05 1.07 5.48 86.38 0.47 1.54 16 4 C -0.11 -1.54 5.40 30.63 0.17 -1.37 16 5 C 0.15 2.60 0.94 0.01 0.00 2.60 16 6 C -0.12 -1.39 7.64 30.93 0.24 -1.16 16 7 C 0.10 1.80 7.14 82.79 0.59 2.39 16 8 N -0.61 -14.78 3.37 -816.42 -2.75 -17.53 16 9 C 0.54 16.96 8.06 87.23 0.70 17.66 16 10 O -0.53 -17.35 13.01 -3.28 -0.04 -17.39 16 11 C 0.49 18.20 7.85 87.23 0.69 18.88 16 12 O -0.54 -22.38 12.51 -3.42 -0.04 -22.42 16 13 N -0.59 -22.60 5.45 -305.33 -1.66 -24.26 16 14 C -0.06 -2.61 6.90 37.82 0.26 -2.35 16 15 C -0.05 -2.59 10.85 85.44 0.93 -1.67 16 16 N -0.31 -18.35 10.39 -56.43 -0.59 -18.94 16 17 N -0.16 -9.04 3.73 -189.97 -0.71 -9.75 16 18 C -0.35 -18.64 10.25 84.02 0.86 -17.78 16 19 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 20 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 21 N -0.82 -46.80 11.81 21.67 0.26 -46.54 16 22 Si 1.02 38.28 29.55 68.60 2.03 40.31 16 23 H -0.24 -8.17 7.11 99.48 0.71 -7.47 16 24 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 26 C -0.08 -3.66 11.50 83.41 0.96 -2.70 16 27 C -0.10 -1.85 5.26 30.63 0.16 -1.69 16 28 C 0.01 0.22 5.32 86.38 0.46 0.68 16 29 H 0.01 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.07 1.20 8.07 -2.38 -0.02 1.18 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.43 8.10 -2.39 -0.02 1.42 16 33 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.11 7.03 -2.39 -0.02 1.09 16 36 H 0.10 1.13 8.13 -2.39 -0.02 1.11 16 37 H 0.13 0.63 8.11 -2.39 -0.02 0.61 16 38 H 0.08 1.69 7.64 -2.39 -0.02 1.68 16 39 H 0.10 1.65 7.29 -2.39 -0.02 1.63 16 40 H 0.42 13.90 8.29 -92.71 -0.77 13.14 16 41 H 0.17 9.21 5.92 -2.91 -0.02 9.20 16 42 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.19 7.09 8.06 -2.91 -0.02 7.07 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 47 H 0.07 2.10 3.87 -34.59 -0.13 1.97 16 Total: -1.00 -74.46 377.20 0.29 -74.17 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: 0.12 Total: 40.63 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 8.17 Total: 16.95 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -9.94 Total: -132.25 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.09 Total: -39.81 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -74.46 0.29 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517492297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.654 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds