Wall clock time and date at job start Wed Apr 1 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 119.99933 * 2 1 4 4 H 1.08001 * 119.99898 * 204.45695 * 3 2 1 5 5 C 1.38810 * 120.00023 * 24.45523 * 3 2 1 6 6 N 1.31619 * 119.99875 * 7.91673 * 5 3 2 7 7 Si 1.86798 * 120.00116 * 187.91183 * 5 3 2 8 8 H 1.48502 * 109.47211 * 90.00074 * 7 5 3 9 9 H 1.48502 * 109.47105 * 210.00221 * 7 5 3 10 10 H 1.48505 * 109.47223 * 330.00138 * 7 5 3 11 11 C 1.46495 * 119.99811 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47098 * 269.99224 * 11 2 1 13 13 O 1.42904 * 109.46731 * 65.00247 * 12 11 2 14 14 C 1.42895 * 113.99915 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47322 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47190 * 64.99995 * 15 14 13 17 17 C 1.46500 * 120.00303 * 270.00660 * 16 15 14 18 18 C 1.34778 * 119.99891 * 89.99894 * 16 15 14 19 19 O 1.21630 * 119.99873 * 2.46875 * 18 16 15 20 20 C 1.47208 * 119.99824 * 182.46306 * 18 16 15 21 21 C 1.37758 * 119.94096 * 332.93405 * 20 18 16 22 22 C 1.39860 * 119.92659 * 179.97438 * 21 20 18 23 23 C 1.36297 * 119.82396 * 359.97438 * 22 21 20 24 24 C 1.40773 * 119.70639 * 0.25597 * 23 22 21 25 25 N 1.32825 * 132.74072 * 180.41761 * 24 23 22 26 26 C 1.32371 * 109.74269 * 179.54449 * 25 24 23 27 27 N 1.31386 * 109.61944 * 359.75776 * 26 25 24 28 28 N 1.36552 * 119.87796 * 359.48396 * 24 23 22 29 29 H 1.09001 * 109.46918 * 275.08713 * 1 2 3 30 30 H 1.09000 * 109.47675 * 35.08416 * 1 2 3 31 31 H 1.09007 * 109.47379 * 155.09189 * 1 2 3 32 32 H 0.97001 * 120.00140 * 179.97438 * 6 5 3 33 33 H 1.09006 * 109.47419 * 149.99722 * 11 2 1 34 34 H 1.09004 * 109.47830 * 29.99500 * 11 2 1 35 35 H 1.08996 * 109.47318 * 305.00441 * 12 11 2 36 36 H 1.08999 * 109.47162 * 185.00127 * 12 11 2 37 37 H 1.09003 * 109.46917 * 60.00360 * 14 13 12 38 38 H 1.09002 * 109.47662 * 300.00442 * 14 13 12 39 39 H 1.09002 * 109.46805 * 305.00353 * 15 14 13 40 40 H 1.08994 * 109.47347 * 185.00439 * 15 14 13 41 41 H 1.09007 * 109.46654 * 269.51818 * 17 16 15 42 42 H 1.08996 * 109.47131 * 29.51235 * 17 16 15 43 43 H 1.08990 * 109.47515 * 149.51706 * 17 16 15 44 44 H 1.07995 * 120.03135 * 0.02562 * 21 20 18 45 45 H 1.08004 * 120.08431 * 180.02562 * 22 21 20 46 46 H 1.08001 * 120.14792 * 179.97438 * 23 22 21 47 47 H 1.08003 * 125.18613 * 179.72886 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1570 1.2279 -0.3872 5 6 1.5490 2.3341 0.4977 6 7 0.3866 2.2561 1.1102 7 14 2.3904 3.9899 0.2982 8 1 1.9567 4.6150 -0.9771 9 1 2.0205 4.8730 1.4333 10 1 3.8628 3.7979 0.2798 11 6 2.1974 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 8 1.2061 -1.9943 2.0806 14 6 1.3326 -2.4188 3.4392 15 6 -0.0564 -2.6933 4.0192 16 7 -0.6650 -3.8245 3.3148 17 6 -1.4792 -3.5908 2.1195 18 6 -0.4757 -5.0802 3.7664 19 8 0.1628 -5.2707 4.7839 20 6 -1.0419 -6.2210 3.0281 21 6 -2.1706 -6.0491 2.2573 22 6 -2.7079 -7.1331 1.5555 23 6 -2.1117 -8.3560 1.6369 24 6 -0.9615 -8.5198 2.4319 25 7 -0.1843 -9.5660 2.6881 26 6 0.7954 -9.2064 3.5025 27 7 0.6842 -7.9291 3.7893 28 7 -0.4440 -7.4520 3.1077 29 1 -0.3633 0.0911 1.0236 30 1 -0.3634 0.8409 -0.5907 31 1 -0.3634 -0.9321 -0.4328 32 1 -0.0330 3.0584 1.4583 33 1 3.1499 -1.1382 -0.5144 34 1 1.6083 -2.0282 -0.5147 35 1 2.9643 -0.9139 1.9811 36 1 3.0733 -2.6069 1.4427 37 1 1.8212 -1.6366 4.0202 38 1 1.9299 -3.3296 3.4813 39 1 -0.6825 -1.8095 3.8964 40 1 0.0329 -2.9308 5.0792 41 1 -2.5211 -3.4563 2.4103 42 1 -1.1260 -2.6951 1.6087 43 1 -1.3963 -4.4472 1.4504 44 1 -2.6395 -5.0783 2.1943 45 1 -3.5925 -7.0011 0.9501 46 1 -2.5224 -9.1967 1.0975 47 1 1.5679 -9.8630 3.8747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566061012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:08 Heat of formation + Delta-G solvation = 105.776404 kcal Electronic energy + Delta-G solvation = -30948.177379 eV Core-core repulsion = 26750.377065 eV Total energy + Delta-G solvation = -4197.800314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.97952 -40.35505 -37.98971 -37.49921 -35.91804 -35.06993 -33.84064 -31.96689 -31.34063 -30.71533 -29.38427 -28.02566 -27.18030 -25.76262 -24.94275 -23.91767 -23.22073 -22.97020 -22.17945 -20.34898 -19.74377 -18.38332 -17.86813 -17.00709 -16.76091 -16.60083 -16.48756 -16.12311 -15.84279 -15.55374 -15.13381 -14.69461 -14.50563 -14.06217 -13.93154 -13.60905 -13.37583 -13.23295 -13.14199 -13.00147 -12.58511 -12.30733 -12.19980 -12.06944 -11.68129 -11.51589 -11.44040 -11.37565 -10.99086 -10.85328 -10.79417 -10.52777 -10.38046 -10.15490 -10.11049 -9.93877 -9.84647 -9.81539 -8.98099 -8.83893 -8.60363 -8.52335 -6.68759 -5.69393 -3.17045 -0.10987 0.59807 1.58961 2.16457 2.61969 2.74028 3.07685 3.37221 3.43799 3.44553 3.60686 3.78483 4.03570 4.21451 4.31727 4.50983 4.52373 4.73661 4.82466 4.99696 5.12749 5.26959 5.28024 5.34979 5.42424 5.51421 5.56328 5.59499 5.68571 5.74781 5.85492 5.86469 5.93524 6.06479 6.09773 6.17093 6.23871 6.27834 6.35839 6.54799 6.75600 6.87571 7.06717 7.46407 7.65202 7.78738 7.80827 7.83934 7.91106 8.43701 9.28137 9.90578 10.41365 11.34429 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002395 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.323634 B =11690.093485 C =11892.421074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.065 0.935 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.367 6.367 14 C 0.047 3.953 15 C 0.123 3.877 16 N -0.587 5.587 17 C 0.052 3.948 18 C 0.552 3.448 19 O -0.506 6.506 20 C 0.103 3.897 21 C -0.134 4.134 22 C -0.071 4.071 23 C -0.084 4.084 24 C 0.271 3.729 25 N -0.543 5.543 26 C 0.226 3.774 27 N -0.308 5.308 28 N -0.261 5.261 29 H 0.033 0.967 30 H 0.035 0.965 31 H -0.009 1.009 32 H 0.250 0.750 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.188 0.812 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -19.195 1.807 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.385 4.385 4 H 0.083 0.917 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.286 6.286 14 C -0.031 4.031 15 C 0.001 3.999 16 N -0.320 5.320 17 C -0.089 4.089 18 C 0.337 3.663 19 O -0.381 6.381 20 C -0.009 4.009 21 C -0.156 4.156 22 C -0.097 4.097 23 C -0.105 4.105 24 C 0.017 3.983 25 N -0.273 5.273 26 C -0.074 4.074 27 N -0.138 5.138 28 N -0.038 5.038 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.205 0.795 45 H 0.178 0.822 46 H 0.179 0.821 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.925 -19.167 2.747 20.922 hybrid contribution 0.719 0.957 0.110 1.202 sum -7.206 -18.211 2.857 19.792 Atomic orbital electron populations 1.20701 0.82285 0.94502 0.99374 1.43846 1.02104 1.00184 1.85775 1.19204 0.99078 0.86042 1.34196 0.91676 1.25065 0.97587 0.98474 0.98333 1.70061 1.17045 1.27130 1.40728 0.86292 0.78980 0.84290 0.77165 1.21547 1.21765 1.20627 1.20880 0.96381 0.88771 0.91347 1.23460 0.85213 0.96765 0.98053 1.87899 1.30399 1.87246 1.23087 1.22761 0.96454 0.98211 0.85723 1.21675 0.93937 0.87834 0.96423 1.47554 1.50566 1.05144 1.28713 1.22665 0.94194 1.05143 0.86948 1.17537 0.81276 0.82360 0.85078 1.90897 1.39121 1.84306 1.23743 1.20149 0.95502 0.84505 1.00761 1.22551 0.94429 1.02872 0.95784 1.21273 0.99769 0.90984 0.97628 1.20522 0.92156 0.99716 0.98123 1.21915 0.96824 0.83623 0.95929 1.70815 1.07849 1.26480 1.22145 1.26313 0.96778 0.91390 0.92943 1.78981 1.01802 1.12686 1.20332 1.47630 1.18660 1.07479 1.30016 0.94835 0.94602 0.99005 0.93935 0.92496 0.93980 0.93376 0.96024 0.92504 0.94100 0.88409 0.88505 0.91526 0.88002 0.90008 0.79506 0.82235 0.82115 0.75695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.20 8.60 59.85 0.51 4.72 16 2 N -0.60 -14.70 2.89 -181.12 -0.52 -15.22 16 3 C -0.26 -6.90 9.66 -15.06 -0.15 -7.05 16 4 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 5 C 0.00 0.10 5.20 -17.43 -0.09 0.01 16 6 N -0.90 -25.70 10.53 55.49 0.58 -25.12 16 7 Si 0.90 21.59 29.56 -169.99 -5.02 16.57 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 C 0.15 3.13 6.11 -4.04 -0.02 3.11 16 12 C 0.04 0.85 6.28 37.16 0.23 1.08 16 13 O -0.37 -6.77 8.73 -35.23 -0.31 -7.08 16 14 C 0.05 0.74 6.28 37.16 0.23 0.98 16 15 C 0.12 1.65 5.83 -4.04 -0.02 1.62 16 16 N -0.59 -7.31 2.84 -182.94 -0.52 -7.83 16 17 C 0.05 0.49 8.53 59.85 0.51 1.00 16 18 C 0.55 7.89 7.53 -12.62 -0.10 7.80 16 19 O -0.51 -9.06 15.95 5.25 0.08 -8.98 16 20 C 0.10 1.26 6.46 -82.05 -0.53 0.73 16 21 C -0.13 -1.00 7.52 -39.15 -0.29 -1.30 16 22 C -0.07 -0.38 10.04 -39.67 -0.40 -0.78 16 23 C -0.08 -0.63 10.09 -39.32 -0.40 -1.03 16 24 C 0.27 3.26 7.88 -156.37 -1.23 2.03 16 25 N -0.54 -7.00 11.24 -13.99 -0.16 -7.16 16 26 C 0.23 2.79 12.98 -92.01 -1.19 1.59 16 27 N -0.31 -4.74 12.05 29.25 0.35 -4.39 16 28 N -0.26 -3.65 3.91 -8.81 -0.03 -3.69 16 29 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 30 H 0.04 0.93 7.30 -51.93 -0.38 0.55 16 31 H -0.01 -0.18 7.84 -51.93 -0.41 -0.59 16 32 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.06 1.10 8.04 -51.93 -0.42 0.69 16 34 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.10 1.26 7.39 -51.93 -0.38 0.88 16 41 H 0.07 0.42 7.13 -51.93 -0.37 0.05 16 42 H 0.10 1.22 7.12 -51.93 -0.37 0.85 16 43 H 0.08 0.65 5.07 -51.93 -0.26 0.39 16 44 H 0.19 0.93 4.17 -52.49 -0.22 0.71 16 45 H 0.16 0.22 8.06 -52.48 -0.42 -0.20 16 46 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.23 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -36.83 388.22 -9.15 -45.99 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.52 Total: -3.45 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -2.93 Total: 14.51 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.30 Total: -63.40 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.22 Total: -16.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.83 -9.15 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566061012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.763 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds