Wall clock time and date at job start Wed Apr 1 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99772 * 2 1 4 4 C 1.53001 * 109.47316 * 66.04080 * 3 2 1 5 5 C 1.52999 * 109.47029 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47097 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99766 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00291 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99924 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47255 * 180.02562 * 9 7 6 11 11 C 1.53786 * 113.61361 * 185.00024 * 10 9 7 12 12 C 1.53781 * 87.17350 * 220.06273 * 11 10 9 13 13 F 1.39895 * 113.61535 * 139.93941 * 12 11 10 14 14 F 1.39898 * 113.61514 * 270.84285 * 12 11 10 15 15 C 1.53782 * 87.08260 * 25.39213 * 12 11 10 16 16 C 1.46894 * 111.00221 * 236.03931 * 2 1 3 17 17 C 1.50697 * 109.47512 * 293.95828 * 16 2 1 18 18 O 1.21289 * 119.99609 * 359.97438 * 17 16 2 19 19 N 1.34777 * 119.99903 * 180.02562 * 17 16 2 20 20 C 1.37102 * 119.99725 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99867 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99867 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99872 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99875 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47429 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47140 * 119.99828 * 24 22 20 27 27 H 1.48499 * 109.47307 * 239.99729 * 24 22 20 28 28 H 1.09002 * 109.47030 * 60.00710 * 1 2 3 29 29 H 1.09001 * 109.47036 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47527 * 300.00625 * 1 2 3 31 31 H 1.09003 * 109.46523 * 306.04205 * 3 2 1 32 32 H 1.08996 * 109.46788 * 186.04506 * 3 2 1 33 33 H 1.09000 * 109.46727 * 59.99990 * 4 3 2 34 34 H 1.09004 * 109.47229 * 299.99861 * 4 3 2 35 35 H 1.09000 * 109.47256 * 60.00458 * 5 4 3 36 36 H 1.08996 * 109.47051 * 300.00410 * 5 4 3 37 37 H 0.97000 * 119.99975 * 0.02562 * 6 5 4 38 38 H 1.09002 * 109.47284 * 60.00086 * 9 7 6 39 39 H 1.09004 * 109.47159 * 300.00284 * 9 7 6 40 40 H 1.08993 * 112.90825 * 316.25225 * 10 9 7 41 41 H 1.09002 * 113.61357 * 105.47190 * 11 10 9 42 42 H 1.09002 * 113.61608 * 334.65352 * 11 10 9 43 43 H 1.08997 * 113.61668 * 89.11298 * 15 12 11 44 44 H 1.08998 * 113.61674 * 219.93807 * 15 12 11 45 45 H 1.09012 * 109.46737 * 53.95767 * 16 2 1 46 46 H 1.09001 * 109.47203 * 173.95104 * 16 2 1 47 47 H 0.96995 * 120.00024 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1802 3.4857 1.3184 6 7 1.8321 4.1425 2.5808 7 6 2.2146 5.4150 2.8063 8 8 2.8465 6.0166 1.9638 9 6 1.8560 6.0908 4.1046 10 6 2.4049 7.5189 4.1049 11 6 2.1984 8.2580 5.4375 12 6 1.8652 9.5076 4.6054 13 9 0.8050 10.2593 5.1230 14 9 2.9839 10.2873 4.2927 15 6 1.4478 8.5490 3.4777 16 6 1.9955 -0.7661 -1.1374 17 6 1.6370 -2.2205 -0.9727 18 8 1.0054 -2.5832 -0.0028 19 7 2.0191 -3.1182 -1.9025 20 6 1.6933 -4.4415 -1.7523 21 1 1.1309 -4.7645 -0.8887 22 6 2.0867 -5.3669 -2.7112 23 7 2.7705 -4.9737 -3.7622 24 14 1.6435 -7.1699 -2.5062 25 1 0.8771 -7.3513 -1.2473 26 1 0.8159 -7.6102 -3.6579 27 1 2.8857 -7.9817 -2.4503 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5470 2.0846 1.4264 35 1 1.7462 4.0419 0.4874 36 1 3.2644 3.4583 1.2104 37 1 1.3270 3.6612 3.2547 38 1 2.2895 5.5344 4.9357 39 1 0.7717 6.1187 4.2124 40 1 3.4243 7.5817 3.7242 41 1 3.1094 8.3567 6.0279 42 1 1.3559 7.8832 6.0188 43 1 0.3998 8.2527 3.5220 44 1 1.7517 8.8832 2.4857 45 1 1.5612 -0.3873 -2.0628 46 1 3.0798 -0.6611 -1.1755 47 1 2.5244 -2.8281 -2.6779 48 1 3.0448 -5.6197 -4.4318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566467744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:44 Heat of formation + Delta-G solvation = -154.799411 kcal Electronic energy + Delta-G solvation = -29017.524713 eV Core-core repulsion = 24357.735797 eV Total energy + Delta-G solvation = -4659.788916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.23182 -47.57196 -40.32204 -38.73691 -38.29158 -36.93580 -35.26375 -33.87630 -32.05967 -31.24899 -30.37856 -27.87560 -26.80060 -26.48707 -24.85591 -23.81581 -22.59964 -21.27484 -20.59513 -20.26378 -19.16505 -17.94894 -17.84046 -17.44737 -17.06347 -16.74557 -16.45642 -16.19682 -15.91086 -15.51274 -15.23313 -14.76215 -14.62550 -14.47312 -14.42718 -13.98017 -13.90526 -13.79056 -13.62247 -13.50231 -13.39380 -13.09898 -12.95314 -12.32233 -12.15668 -11.97599 -11.78340 -11.74658 -11.71139 -11.49790 -11.42158 -11.28142 -11.27035 -10.94875 -10.91433 -10.76712 -10.35288 -10.23964 -10.18238 -9.49869 -9.40046 -8.47326 -7.99184 -7.87605 -6.42827 -3.83632 2.28602 2.75164 3.00458 3.15260 3.25965 3.29604 3.32916 3.74896 3.79629 3.83241 3.89274 3.97195 4.22996 4.36618 4.60305 4.75554 4.78112 4.84649 4.87729 4.92477 4.99733 5.03056 5.07030 5.12892 5.23378 5.24187 5.27048 5.37252 5.47049 5.55738 5.67297 5.71205 5.71735 5.89377 5.94616 5.96680 6.04450 6.12626 6.27237 6.52666 7.12744 7.23896 7.36444 7.54370 7.86593 8.05643 8.60833 9.17222 9.53609 10.05314 10.75011 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.001209 C = 0.001198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.753945 B =23149.331520 C =23360.818893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.730 5.730 7 C 0.510 3.490 8 O -0.538 6.538 9 C -0.130 4.130 10 C -0.088 4.088 11 C -0.162 4.162 12 C 0.252 3.748 13 F -0.193 7.193 14 F -0.179 7.179 15 C -0.159 4.159 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 26.167 15.261 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.165 4.165 5 C -0.005 4.005 6 N -0.382 5.382 7 C 0.297 3.703 8 O -0.415 6.415 9 C -0.170 4.170 10 C -0.107 4.107 11 C -0.200 4.200 12 C 0.216 3.784 13 F -0.173 7.173 14 F -0.160 7.160 15 C -0.197 4.197 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.762 26.042 15.563 30.389 hybrid contribution -0.330 -0.374 -0.950 1.073 sum -2.092 25.668 14.613 29.610 Atomic orbital electron populations 1.22576 0.86875 1.04451 0.98854 1.61546 1.08666 1.11219 1.42856 1.22006 1.00468 0.88966 0.95692 1.21776 1.01728 0.93459 0.99577 1.21348 1.00722 0.92730 0.85653 1.46046 1.57896 1.13917 1.20293 1.20595 0.79214 0.81556 0.88978 1.90729 1.39580 1.64341 1.46870 1.21618 1.03221 0.95683 0.96472 1.22192 1.01302 0.92348 0.94850 1.24193 1.05036 0.92645 0.98164 1.22078 0.75480 0.83581 0.97305 1.93012 1.56488 1.79895 1.87947 1.93029 1.52007 1.77421 1.93544 1.24215 1.02084 0.94240 0.99203 1.21866 1.00700 0.94151 0.91849 1.19737 0.85444 0.86657 0.85232 1.90477 1.43982 1.80166 1.31629 1.41878 1.49394 1.07371 1.21472 1.19750 1.32893 0.82270 1.07907 0.87857 1.25258 0.96818 1.00565 0.95303 1.69620 1.38123 1.35670 1.10893 0.85806 0.78208 0.81948 0.78411 1.19221 1.20792 1.20756 0.96803 0.88617 0.92140 0.94902 0.90592 0.90164 0.91110 0.91515 0.91240 0.76371 0.87891 0.88253 0.86693 0.88587 0.86806 0.87134 0.88433 0.93455 0.89369 0.77492 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.07 0.54 0.85 16 2 N -0.52 -8.21 4.50 -244.36 -1.10 -9.31 16 3 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 4 C -0.13 -1.15 5.25 -26.73 -0.14 -1.29 16 5 C 0.12 1.01 5.67 -4.04 -0.02 0.98 16 6 N -0.73 -4.92 5.56 -60.30 -0.33 -5.25 16 7 C 0.51 4.00 7.83 -10.99 -0.09 3.92 16 8 O -0.54 -6.50 15.76 5.56 0.09 -6.41 16 9 C -0.13 -0.51 5.54 -27.88 -0.15 -0.67 16 10 C -0.09 -0.46 3.14 -89.71 -0.28 -0.74 16 11 C -0.16 -0.67 7.42 -25.92 -0.19 -0.86 16 12 C 0.25 1.73 3.28 -25.92 -0.08 1.64 16 13 F -0.19 -1.60 17.41 2.25 0.04 -1.56 16 14 F -0.18 -1.61 17.38 2.25 0.04 -1.57 16 15 C -0.16 -0.92 7.43 -25.82 -0.19 -1.12 16 16 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 17 C 0.44 10.29 7.47 -10.99 -0.08 10.21 16 18 O -0.58 -15.26 13.91 5.55 0.08 -15.18 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 24 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 1.83 5.83 -51.93 -0.30 1.53 16 30 H 0.06 0.78 6.47 -51.93 -0.34 0.45 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 1.68 8.47 -40.82 -0.35 1.34 16 38 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.20 7.84 -51.93 -0.41 -0.21 16 40 H 0.11 0.81 7.68 -51.93 -0.40 0.41 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.26 8.10 -51.93 -0.42 -0.16 16 43 H 0.11 0.47 7.90 -51.93 -0.41 0.06 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.76 8.12 -51.92 -0.42 0.34 16 46 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -33.98 402.61 -7.89 -41.87 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.42 Total: 6.89 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.98 Total: 6.46 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.77 Total: -52.37 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.16 Total: -21.59 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.98 -7.89 -41.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566467744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.929 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds