Wall clock time and date at job start Wed Apr 1 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99772 * 2 1 4 4 C 1.53001 * 109.47316 * 66.04080 * 3 2 1 5 5 C 1.52999 * 109.47029 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47097 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99766 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00291 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99924 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47255 * 180.02562 * 9 7 6 11 11 C 1.53786 * 113.61361 * 185.00024 * 10 9 7 12 12 C 1.53781 * 87.17350 * 220.06273 * 11 10 9 13 13 F 1.39895 * 113.61535 * 139.93941 * 12 11 10 14 14 F 1.39898 * 113.61514 * 270.84285 * 12 11 10 15 15 C 1.53782 * 87.08260 * 25.39213 * 12 11 10 16 16 C 1.46894 * 111.00221 * 236.03931 * 2 1 3 17 17 C 1.50697 * 109.47512 * 293.95828 * 16 2 1 18 18 O 1.21289 * 119.99609 * 359.97438 * 17 16 2 19 19 N 1.34777 * 119.99903 * 180.02562 * 17 16 2 20 20 C 1.37102 * 119.99725 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99867 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99867 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99872 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99875 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47429 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47140 * 119.99828 * 24 22 20 27 27 H 1.48499 * 109.47307 * 239.99729 * 24 22 20 28 28 H 1.09002 * 109.47030 * 60.00710 * 1 2 3 29 29 H 1.09001 * 109.47036 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47527 * 300.00625 * 1 2 3 31 31 H 1.09003 * 109.46523 * 306.04205 * 3 2 1 32 32 H 1.08996 * 109.46788 * 186.04506 * 3 2 1 33 33 H 1.09000 * 109.46727 * 59.99990 * 4 3 2 34 34 H 1.09004 * 109.47229 * 299.99861 * 4 3 2 35 35 H 1.09000 * 109.47256 * 60.00458 * 5 4 3 36 36 H 1.08996 * 109.47051 * 300.00410 * 5 4 3 37 37 H 0.97000 * 119.99975 * 0.02562 * 6 5 4 38 38 H 1.09002 * 109.47284 * 60.00086 * 9 7 6 39 39 H 1.09004 * 109.47159 * 300.00284 * 9 7 6 40 40 H 1.08993 * 112.90825 * 316.25225 * 10 9 7 41 41 H 1.09002 * 113.61357 * 105.47190 * 11 10 9 42 42 H 1.09002 * 113.61608 * 334.65352 * 11 10 9 43 43 H 1.08997 * 113.61668 * 89.11298 * 15 12 11 44 44 H 1.08998 * 113.61674 * 219.93807 * 15 12 11 45 45 H 1.09012 * 109.46737 * 53.95767 * 16 2 1 46 46 H 1.09001 * 109.47203 * 173.95104 * 16 2 1 47 47 H 0.96995 * 120.00024 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1802 3.4857 1.3184 6 7 1.8321 4.1425 2.5808 7 6 2.2146 5.4150 2.8063 8 8 2.8465 6.0166 1.9638 9 6 1.8560 6.0908 4.1046 10 6 2.4049 7.5189 4.1049 11 6 2.1984 8.2580 5.4375 12 6 1.8652 9.5076 4.6054 13 9 0.8050 10.2593 5.1230 14 9 2.9839 10.2873 4.2927 15 6 1.4478 8.5490 3.4777 16 6 1.9955 -0.7661 -1.1374 17 6 1.6370 -2.2205 -0.9727 18 8 1.0054 -2.5832 -0.0028 19 7 2.0191 -3.1182 -1.9025 20 6 1.6933 -4.4415 -1.7523 21 1 1.1309 -4.7645 -0.8887 22 6 2.0867 -5.3669 -2.7112 23 7 2.7705 -4.9737 -3.7622 24 14 1.6435 -7.1699 -2.5062 25 1 0.8771 -7.3513 -1.2473 26 1 0.8159 -7.6102 -3.6579 27 1 2.8857 -7.9817 -2.4503 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5470 2.0846 1.4264 35 1 1.7462 4.0419 0.4874 36 1 3.2644 3.4583 1.2104 37 1 1.3270 3.6612 3.2547 38 1 2.2895 5.5344 4.9357 39 1 0.7717 6.1187 4.2124 40 1 3.4243 7.5817 3.7242 41 1 3.1094 8.3567 6.0279 42 1 1.3559 7.8832 6.0188 43 1 0.3998 8.2527 3.5220 44 1 1.7517 8.8832 2.4857 45 1 1.5612 -0.3873 -2.0628 46 1 3.0798 -0.6611 -1.1755 47 1 2.5244 -2.8281 -2.6779 48 1 3.0448 -5.6197 -4.4318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566467744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:43 Heat of formation + Delta-G solvation = -179.659606 kcal Electronic energy + Delta-G solvation = -29018.602732 eV Core-core repulsion = 24357.735797 eV Total energy + Delta-G solvation = -4660.866935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.80748 -48.16666 -40.90669 -40.36147 -38.83786 -38.17736 -36.19626 -35.74506 -33.28018 -32.81621 -30.93647 -29.30617 -27.52941 -27.16850 -26.52232 -24.62008 -23.49510 -22.07902 -21.27554 -20.95879 -20.74351 -19.83834 -18.48356 -18.02162 -17.83187 -17.53933 -17.27077 -16.95997 -16.91375 -16.55880 -16.36473 -16.33784 -15.85911 -15.46304 -15.28741 -15.03517 -15.00537 -14.77611 -14.48222 -14.42721 -14.24212 -13.73850 -13.57817 -13.47068 -13.45297 -13.14396 -13.00730 -12.80907 -12.69964 -12.49950 -12.37453 -12.31696 -12.23764 -12.10206 -12.09184 -11.82474 -11.61938 -11.44815 -11.35539 -10.83990 -10.26003 -10.03719 -9.98241 -9.18497 -8.45248 -5.93718 1.37509 1.42799 1.56815 1.72305 2.07389 2.18603 2.30984 2.55409 2.82534 2.88806 3.21930 3.29643 3.39588 3.43162 3.45431 3.91866 3.99350 4.08233 4.15513 4.23672 4.34647 4.41921 4.44887 4.50392 4.53473 4.56347 4.58582 4.62646 4.66872 4.69894 4.76592 4.78809 4.83983 4.86840 4.91916 5.12834 5.22409 5.30876 5.33663 5.42995 5.51725 5.90227 6.09092 6.24857 6.62491 6.63325 7.14906 7.33707 7.58658 8.14396 8.72444 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.047709 B = 0.001209 C = 0.001198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.753945 B =23149.331520 C =23360.818893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.056 3.944 4 C -0.113 4.113 5 C 0.127 3.873 6 N -0.721 5.721 7 C 0.505 3.495 8 O -0.588 6.588 9 C -0.120 4.120 10 C -0.088 4.088 11 C -0.143 4.143 12 C 0.232 3.768 13 F -0.203 7.203 14 F -0.198 7.198 15 C -0.160 4.160 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 26.345 16.489 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.151 4.151 5 C 0.002 3.998 6 N -0.373 5.373 7 C 0.293 3.707 8 O -0.469 6.469 9 C -0.159 4.159 10 C -0.107 4.107 11 C -0.180 4.180 12 C 0.196 3.804 13 F -0.184 7.184 14 F -0.179 7.179 15 C -0.197 4.197 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.160 0.840 43 H 0.149 0.851 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.126 0.874 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.373 26.229 16.805 31.241 hybrid contribution -0.152 -0.353 -1.326 1.381 sum -2.525 25.876 15.479 30.258 Atomic orbital electron populations 1.22466 0.86877 1.02189 1.00764 1.61518 1.08894 1.13554 1.42165 1.22105 1.00771 0.86779 0.97485 1.21618 1.02149 0.93286 0.98044 1.21134 0.99934 0.92322 0.86399 1.45966 1.57568 1.13782 1.20008 1.21318 0.78143 0.81462 0.89748 1.90718 1.41878 1.65471 1.48790 1.21666 1.05121 0.94304 0.94846 1.22087 0.99936 0.93295 0.95403 1.24177 1.06371 0.89982 0.97481 1.22605 0.74924 0.83901 0.98995 1.92986 1.56929 1.80321 1.88132 1.92985 1.53000 1.78104 1.93836 1.24291 1.03377 0.94183 0.97891 1.21743 1.02069 0.90232 0.93427 1.20788 0.83674 0.88786 0.83877 1.90455 1.45122 1.81461 1.32901 1.41954 1.50094 1.07070 1.22210 1.19703 1.34302 0.84045 1.08028 0.90243 1.26021 0.96288 1.04288 0.94684 1.69681 1.38290 1.37084 1.11245 0.84877 0.78218 0.77011 0.78271 1.19697 1.19705 1.19722 0.95516 0.92854 0.89600 0.93840 0.90009 0.90409 0.90283 0.92270 0.92351 0.74579 0.85134 0.85274 0.89143 0.87922 0.84042 0.85137 0.90419 0.91681 0.87358 0.77097 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 8.96 127.69 1.14 1.88 16 2 N -0.54 -16.14 4.50 -927.03 -4.17 -20.31 16 3 C 0.06 1.18 4.96 86.30 0.43 1.61 16 4 C -0.11 -1.77 5.25 30.59 0.16 -1.61 16 5 C 0.13 1.91 5.67 86.38 0.49 2.40 16 6 N -0.72 -7.99 5.56 -463.07 -2.57 -10.56 16 7 C 0.51 7.01 7.83 87.66 0.69 7.70 16 8 O -0.59 -14.09 15.76 -3.03 -0.05 -14.13 16 9 C -0.12 -0.57 5.54 29.85 0.17 -0.40 16 10 C -0.09 -0.79 3.14 -10.20 -0.03 -0.82 16 11 C -0.14 -0.83 7.42 31.12 0.23 -0.60 16 12 C 0.23 3.02 3.28 31.12 0.10 3.12 16 13 F -0.20 -3.19 17.41 44.97 0.78 -2.41 16 14 F -0.20 -3.68 17.38 44.97 0.78 -2.90 16 15 C -0.16 -1.72 7.43 31.18 0.23 -1.48 16 16 C 0.06 1.91 5.45 85.56 0.47 2.37 16 17 C 0.44 20.71 7.47 87.66 0.66 21.36 16 18 O -0.61 -33.17 13.91 -3.06 -0.04 -33.21 16 19 N -0.58 -29.33 5.29 -306.99 -1.62 -30.95 16 20 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 2.05 5.83 -2.39 -0.01 2.04 16 30 H 0.09 2.04 6.47 -2.39 -0.02 2.02 16 31 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.08 1.62 7.93 -2.39 -0.02 1.60 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.13 6.55 -2.38 -0.02 1.12 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.42 2.09 8.47 -92.71 -0.79 1.31 16 38 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.13 -0.09 7.84 -2.38 -0.02 -0.11 16 40 H 0.09 1.28 7.68 -2.39 -0.02 1.26 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.14 0.07 8.10 -2.39 -0.02 0.05 16 43 H 0.13 0.82 7.90 -2.39 -0.02 0.81 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 46 H 0.11 3.23 7.93 -2.39 -0.02 3.21 16 47 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 48 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -76.71 402.61 0.91 -75.81 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.52 Total: 25.88 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.01 Total: 17.43 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -8.08 Total: -111.14 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.09 Total: -47.34 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 1.56 Total: -5.31 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -76.71 0.91 -75.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566467744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.852 kcal (2) G-P(sol) polarization free energy of solvation -76.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds