Wall clock time and date at job start Wed Apr 1 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 110.99935 * 2 1 4 4 C 1.50696 * 109.47317 * 293.95173 * 3 2 1 5 5 O 1.21291 * 119.99695 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00434 * 179.97438 * 4 3 2 7 7 C 1.37092 * 120.00628 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99664 * 359.73396 * 7 6 4 9 9 C 1.38947 * 120.00667 * 179.72378 * 7 6 4 10 10 N 1.31411 * 120.00673 * 180.02562 * 9 7 6 11 11 Si 1.86808 * 119.99527 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47035 * 90.00075 * 11 9 7 13 13 H 1.48499 * 109.46926 * 209.99711 * 11 9 7 14 14 H 1.48498 * 109.47193 * 330.00043 * 11 9 7 15 15 C 1.46896 * 110.99966 * 123.95056 * 2 1 3 16 16 H 1.09001 * 109.50106 * 186.04442 * 15 2 1 17 17 C 1.53045 * 109.49478 * 65.98500 * 15 2 1 18 18 C 1.53039 * 109.53785 * 178.71642 * 17 15 2 19 19 C 1.53194 * 109.34192 * 61.31831 * 18 17 15 20 20 N 1.46932 * 108.77211 * 305.37730 * 19 18 17 21 21 C 1.34776 * 120.63005 * 233.63199 * 20 19 18 22 22 O 1.21511 * 119.99830 * 172.40111 * 21 20 19 23 23 C 1.48150 * 120.00010 * 352.39820 * 21 20 19 24 24 C 1.39439 * 120.09657 * 170.81187 * 23 21 20 25 25 N 1.32074 * 119.87547 * 180.02562 * 24 23 21 26 26 C 1.32137 * 120.06991 * 0.02562 * 25 24 23 27 27 C 1.38731 * 120.19855 * 359.97438 * 26 25 24 28 28 N 1.31799 * 120.12417 * 359.72473 * 27 26 25 29 29 C 1.46930 * 118.73765 * 53.60952 * 20 19 18 30 30 H 1.09003 * 109.46970 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47205 * 300.00352 * 1 2 3 33 33 H 1.08997 * 109.46735 * 173.95174 * 3 2 1 34 34 H 1.09004 * 109.46863 * 53.95379 * 3 2 1 35 35 H 0.97009 * 119.99518 * 359.72604 * 6 4 3 36 36 H 0.96994 * 120.00276 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.45809 * 298.70224 * 17 15 2 38 38 H 1.08995 * 109.45982 * 58.66355 * 17 15 2 39 39 H 1.09001 * 109.47215 * 301.36310 * 18 17 15 40 40 H 1.09004 * 109.49333 * 181.28217 * 18 17 15 41 41 H 1.08994 * 109.58356 * 185.59719 * 19 18 17 42 42 H 1.09000 * 109.70367 * 65.23170 * 19 18 17 43 43 H 1.08001 * 120.05842 * 0.02710 * 24 23 21 44 44 H 1.08007 * 119.90400 * 180.02562 * 26 25 24 45 45 H 1.07993 * 119.94168 * 180.02562 * 27 26 25 46 46 H 1.08995 * 109.58776 * 186.60163 * 29 20 19 47 47 H 1.09001 * 109.58487 * 66.17643 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0047 1.4456 -2.1407 6 7 2.0180 3.3202 -1.5233 7 6 1.6924 3.9348 -2.7047 8 1 1.1342 3.3973 -3.4570 9 6 2.0803 5.2491 -2.9342 10 7 1.7677 5.8384 -4.0665 11 14 3.0461 6.1786 -1.6331 12 1 4.5000 5.9725 -1.8545 13 1 2.7321 7.6271 -1.7241 14 1 2.6742 5.6750 -0.2866 15 6 1.9954 -0.7659 1.1376 16 1 3.0797 -0.6614 1.1761 17 6 1.6303 -2.2429 0.9717 18 6 2.2057 -3.0467 2.1400 19 6 1.5966 -2.5418 3.4519 20 7 1.8185 -1.0926 3.5494 21 6 2.4097 -0.5601 4.6372 22 8 2.7128 0.6166 4.6491 23 6 2.6899 -1.4093 5.8184 24 6 3.4682 -0.9164 6.8651 25 7 3.7157 -1.6774 7.9158 26 6 3.2271 -2.9037 7.9750 27 6 2.4523 -3.3970 6.9353 28 7 2.1956 -2.6423 5.8858 29 6 1.3841 -0.2352 2.4381 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0797 1.3444 0.1083 34 1 1.5610 1.9274 0.8310 35 1 2.5196 3.8029 -0.8477 36 1 2.0382 6.7560 -4.2265 37 1 0.5456 -2.3494 0.9576 38 1 2.0439 -2.6161 0.0349 39 1 3.2880 -2.9211 2.1693 40 1 1.9647 -4.1017 2.0093 41 1 2.0757 -3.0422 4.2934 42 1 0.5267 -2.7493 3.4642 43 1 3.8679 0.0858 6.8166 44 1 3.4308 -3.5235 8.8357 45 1 2.0548 -4.3997 6.9882 46 1 1.7227 0.7864 2.6108 47 1 0.2967 -0.2544 2.3652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567186723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:46 Heat of formation + Delta-G solvation = -4.047584 kcal Electronic energy + Delta-G solvation = -30605.596565 eV Core-core repulsion = 26403.033925 eV Total energy + Delta-G solvation = -4202.562640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.51969 -41.23220 -40.37369 -39.13316 -37.08059 -35.96059 -35.45775 -33.77611 -33.51415 -32.79017 -31.05975 -29.44453 -27.52159 -27.04736 -25.88346 -25.52157 -25.17259 -23.11793 -21.86753 -21.25611 -20.39719 -20.14328 -19.10181 -18.29332 -17.93503 -17.84583 -17.17520 -16.91768 -16.78876 -16.49485 -16.41689 -15.93131 -15.65883 -15.46502 -15.24791 -15.14516 -14.95884 -14.50219 -14.43454 -14.24771 -14.11393 -14.04767 -13.81880 -13.53291 -13.11899 -12.88341 -12.68112 -12.60265 -12.50514 -12.42951 -12.32552 -12.00347 -11.81301 -11.57864 -11.53188 -11.46177 -11.34030 -10.56325 -10.40978 -10.24826 -9.97479 -9.92718 -9.09413 -8.42656 -6.02684 -0.71584 -0.07049 1.28890 1.32679 1.41268 1.53246 1.68840 1.92892 2.20470 2.55481 2.63734 2.79626 3.12128 3.14619 3.20745 3.35716 3.51598 3.72692 3.82167 3.99319 4.04337 4.11749 4.16930 4.18929 4.24431 4.31609 4.37932 4.48221 4.50828 4.52959 4.60862 4.63693 4.82855 4.87987 5.02780 5.07432 5.16126 5.23102 5.29102 5.39952 5.51528 5.57424 5.86868 5.96748 5.99180 6.13624 6.20775 6.56633 6.58113 6.86939 6.87291 7.38067 7.94457 8.74749 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002386 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.578790 B =11731.997798 C =13151.442684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.522 5.522 3 C 0.051 3.949 4 C 0.455 3.545 5 O -0.600 6.600 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.059 0.941 9 C -0.013 4.013 10 N -0.932 5.932 11 Si 0.960 3.040 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.238 1.238 15 C 0.080 3.920 16 H 0.080 0.920 17 C -0.109 4.109 18 C -0.125 4.125 19 C 0.073 3.927 20 N -0.582 5.582 21 C 0.565 3.435 22 O -0.569 6.569 23 C 0.014 3.986 24 C 0.100 3.900 25 N -0.461 5.461 26 C 0.086 3.914 27 C 0.058 3.942 28 N -0.411 5.411 29 C 0.078 3.922 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.387 0.613 36 H 0.279 0.721 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.173 0.827 44 H 0.219 0.781 45 H 0.226 0.774 46 H 0.074 0.926 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -24.173 29.905 38.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.080 4.080 4 C 0.242 3.758 5 O -0.484 6.484 6 N -0.235 5.235 7 C -0.453 4.453 8 H 0.077 0.923 9 C -0.212 4.212 10 N -0.573 5.573 11 Si 0.780 3.220 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.161 1.161 15 C -0.030 4.030 16 H 0.098 0.902 17 C -0.146 4.146 18 C -0.163 4.163 19 C -0.048 4.048 20 N -0.313 5.313 21 C 0.352 3.648 22 O -0.448 6.448 23 C -0.124 4.124 24 C -0.057 4.057 25 N -0.175 5.175 26 C -0.076 4.076 27 C -0.104 4.104 28 N -0.129 5.129 29 C -0.046 4.046 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.222 0.778 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.169 0.831 42 H 0.094 0.906 43 H 0.190 0.810 44 H 0.235 0.765 45 H 0.243 0.757 46 H 0.093 0.907 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.081 -23.933 28.709 37.503 hybrid contribution 0.043 1.808 0.373 1.847 sum 3.124 -22.125 29.082 36.675 Atomic orbital electron populations 1.22532 0.86693 1.02888 1.00660 1.61841 1.09186 1.11902 1.41532 1.21853 1.02418 0.90126 0.93646 1.20709 0.83002 0.81816 0.90233 1.90507 1.43948 1.65067 1.48874 1.42069 1.52017 1.12562 1.16901 1.18994 1.34964 0.96859 0.94523 0.92294 1.26040 0.98629 0.96976 0.99559 1.69788 1.47241 1.14285 1.25977 0.85429 0.79201 0.78356 0.78976 1.18136 1.19788 1.16124 1.22139 0.99470 0.95265 0.86079 0.90207 1.21587 1.01773 0.91798 0.99488 1.21934 1.00295 1.00917 0.93198 1.23191 1.02752 0.77533 1.01369 1.48013 1.57127 1.09831 1.16305 1.18114 0.77664 0.86254 0.82762 1.90792 1.53957 1.17551 1.82484 1.21778 1.00526 0.93548 0.96571 1.23730 0.92904 1.00886 0.88225 1.68694 1.19384 1.06511 1.22943 1.24933 0.90617 0.91677 1.00330 1.24860 0.94748 1.02400 0.88432 1.68318 1.17761 1.03066 1.23799 1.22433 1.00156 0.95417 0.86609 0.92574 0.89436 0.94867 0.87044 0.91159 0.77756 0.91139 0.90954 0.91212 0.92221 0.87726 0.83100 0.90562 0.80962 0.76484 0.75728 0.90746 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.33 127.69 1.06 1.67 16 2 N -0.52 -16.31 4.45 -901.15 -4.01 -20.32 16 3 C 0.05 1.73 5.03 85.55 0.43 2.16 16 4 C 0.45 21.44 7.51 87.66 0.66 22.10 16 5 O -0.60 -33.62 13.88 -3.06 -0.04 -33.66 16 6 N -0.59 -29.34 5.09 -307.00 -1.56 -30.90 16 7 C -0.32 -19.45 10.16 84.04 0.85 -18.60 16 8 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 9 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 10 N -0.93 -57.20 13.96 21.66 0.30 -56.90 16 11 Si 0.96 40.66 27.74 68.60 1.90 42.57 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 14 H -0.24 -8.79 6.52 99.48 0.65 -8.14 16 15 C 0.08 1.89 2.34 45.00 0.11 2.00 16 16 H 0.08 1.99 7.93 -2.39 -0.02 1.97 16 17 C -0.11 -2.01 5.07 30.62 0.16 -1.86 16 18 C -0.12 -1.64 6.08 30.67 0.19 -1.45 16 19 C 0.07 1.00 5.90 86.36 0.51 1.51 16 20 N -0.58 -11.91 2.97 -821.96 -2.44 -14.36 16 21 C 0.57 13.28 7.66 86.88 0.67 13.94 16 22 O -0.57 -17.32 15.81 -3.75 -0.06 -17.38 16 23 C 0.01 0.24 6.58 41.89 0.28 0.51 16 24 C 0.10 1.70 10.77 84.95 0.91 2.61 16 25 N -0.46 -6.23 10.49 -194.12 -2.04 -8.26 16 26 C 0.09 0.43 11.23 84.76 0.95 1.38 16 27 C 0.06 0.22 11.22 84.82 0.95 1.17 16 28 N -0.41 -4.71 6.31 -184.33 -1.16 -5.88 16 29 C 0.08 1.82 5.02 86.36 0.43 2.25 16 30 H 0.06 2.23 5.88 -2.39 -0.01 2.21 16 31 H 0.09 2.22 6.33 -2.39 -0.02 2.20 16 32 H 0.03 0.90 6.34 -2.39 -0.02 0.89 16 33 H 0.11 3.35 7.93 -2.39 -0.02 3.33 16 34 H 0.07 2.16 7.20 -2.38 -0.02 2.15 16 35 H 0.39 16.31 5.76 -92.70 -0.53 15.77 16 36 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.07 1.27 6.53 -2.39 -0.02 1.26 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.88 8.14 -2.38 -0.02 0.87 16 41 H 0.15 1.79 4.01 -64.41 -0.26 1.53 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.17 3.06 7.68 -2.91 -0.02 3.04 16 44 H 0.22 -0.84 8.06 -2.91 -0.02 -0.87 16 45 H 0.23 -1.29 8.06 -2.91 -0.02 -1.32 16 46 H 0.07 2.04 6.05 -2.39 -0.01 2.03 16 47 H 0.08 1.80 6.13 -2.39 -0.01 1.79 16 Total: -1.00 -85.04 371.98 -0.30 -85.34 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.19 Total: 30.62 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 8.62 Total: 29.12 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -10.91 Total: -136.61 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.10 Total: -51.03 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.90 Total: 42.57 kcal Total: -85.04 -0.30 -85.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567186723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.294 kcal (2) G-P(sol) polarization free energy of solvation -85.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds