Wall clock time and date at job start Wed Apr 1 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 120.00088 * 2 1 4 4 H 1.08008 * 119.99880 * 202.73892 * 3 2 1 5 5 C 1.38809 * 120.00556 * 22.73734 * 3 2 1 6 6 N 1.31627 * 119.99595 * 13.36952 * 5 3 2 7 7 Si 1.86793 * 120.00363 * 193.37489 * 5 3 2 8 8 H 1.48497 * 109.47288 * 89.99973 * 7 5 3 9 9 H 1.48505 * 109.47075 * 209.99796 * 7 5 3 10 10 H 1.48501 * 109.46993 * 329.99390 * 7 5 3 11 11 C 1.46497 * 119.99454 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47057 * 90.00386 * 11 2 1 13 13 H 1.09002 * 110.91623 * 302.54675 * 12 11 2 14 14 C 1.55160 * 111.00618 * 66.45041 * 12 11 2 15 15 C 1.54320 * 103.10435 * 153.66522 * 14 12 11 16 16 N 1.47023 * 107.27054 * 337.72002 * 15 14 12 17 17 C 1.34779 * 125.64827 * 178.97541 * 16 15 14 18 18 O 1.21280 * 120.00059 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99938 * 359.97438 * 17 16 15 20 20 H 1.09003 * 109.10551 * 40.86810 * 19 17 16 21 21 C 1.53354 * 109.11058 * 281.80124 * 19 17 16 22 22 C 1.50670 * 107.83901 * 282.53885 * 21 19 17 23 23 C 1.33050 * 130.83263 * 153.10083 * 22 21 19 24 24 N 1.34739 * 108.03499 * 179.37230 * 23 22 21 25 25 C 1.30819 * 109.53296 * 359.97357 * 24 23 22 26 26 N 1.35008 * 108.36330 * 0.35006 * 25 24 23 27 27 C 1.34583 * 131.40828 * 180.24362 * 26 25 24 28 28 O 1.21484 * 120.69103 * 9.40036 * 27 26 25 29 29 N 1.34833 * 118.61418 * 189.37817 * 27 26 25 30 30 C 1.47422 * 108.70355 * 358.93922 * 16 15 14 31 31 H 1.08998 * 109.46788 * 275.13780 * 1 2 3 32 32 H 1.09002 * 109.46564 * 35.13263 * 1 2 3 33 33 H 1.08994 * 109.47054 * 155.13100 * 1 2 3 34 34 H 0.96994 * 119.99642 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.47834 * 330.00141 * 11 2 1 36 36 H 1.09003 * 109.47265 * 209.99797 * 11 2 1 37 37 H 1.09005 * 110.72047 * 35.21346 * 14 12 11 38 38 H 1.08994 * 110.71841 * 272.12247 * 14 12 11 39 39 H 1.08997 * 109.88389 * 97.13359 * 15 14 12 40 40 H 1.08995 * 109.88322 * 218.30076 * 15 14 12 41 41 H 1.08994 * 109.78849 * 42.12688 * 21 19 17 42 42 H 1.09003 * 109.78665 * 162.95773 * 21 19 17 43 43 H 1.07995 * 125.98405 * 359.41709 * 23 22 21 44 44 H 1.08003 * 125.82594 * 180.39003 * 25 24 23 45 45 H 0.97005 * 118.56031 * 190.88241 * 29 27 26 46 46 H 1.09001 * 110.36820 * 142.96957 * 30 16 15 47 47 H 1.09006 * 110.36903 * 265.18251 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2222 -0.3616 5 6 1.5367 2.3414 0.4646 6 7 0.4111 2.2622 1.1423 7 14 2.3090 4.0085 0.1279 8 1 1.7882 4.5454 -1.1549 9 1 1.9686 4.9434 1.2304 10 1 3.7842 3.8622 0.0409 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4417 13 1 1.5158 -1.8054 -1.9912 14 6 3.4224 -0.7355 -2.1594 15 6 4.0771 -1.6237 -3.2383 16 7 3.9424 -3.0192 -2.7955 17 6 4.3710 -4.1029 -3.4726 18 8 4.2063 -5.2116 -3.0093 19 6 5.0548 -3.9370 -4.8052 20 1 5.7312 -3.0836 -4.7554 21 6 3.9964 -3.6750 -5.8835 22 6 3.3446 -4.9911 -6.2199 23 6 2.1302 -5.2657 -6.6890 24 7 2.0323 -6.6013 -6.8370 25 6 3.1551 -7.1652 -6.4726 26 7 4.0063 -6.1974 -6.0708 27 6 5.2705 -6.2575 -5.6133 28 8 5.8989 -7.2961 -5.6621 29 7 5.8253 -5.1409 -5.1001 30 6 3.2618 -3.0367 -1.4880 31 1 -0.3633 0.0920 1.0235 32 1 -0.3632 0.8405 -0.5914 33 1 -0.3633 -0.9323 -0.4322 34 1 -0.0170 3.0696 1.4673 35 1 1.6083 -2.0283 0.5147 36 1 3.1499 -1.1383 0.5143 37 1 4.1722 -0.3566 -1.4648 38 1 2.8731 0.0867 -2.6179 39 1 3.5665 -1.4863 -4.1914 40 1 5.1315 -1.3671 -3.3399 41 1 3.2482 -2.9788 -5.5046 42 1 4.4706 -3.2601 -6.7729 43 1 1.3583 -4.5442 -6.9127 44 1 3.3656 -8.2244 -6.4907 45 1 6.7784 -5.1375 -4.9192 46 1 2.5906 -3.8930 -1.4211 47 1 3.9929 -3.0647 -0.6800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567733682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:29 Heat of formation + Delta-G solvation = 44.394631 kcal Electronic energy + Delta-G solvation = -31200.048664 eV Core-core repulsion = 26999.586636 eV Total energy + Delta-G solvation = -4200.462028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.41165 -40.54224 -39.54895 -37.96292 -36.42560 -35.47382 -33.44930 -32.68069 -32.05862 -30.65213 -29.49056 -28.91521 -26.24449 -25.77248 -24.90127 -24.34647 -23.02898 -21.83460 -21.53113 -20.39246 -19.77423 -19.27961 -18.34952 -17.75331 -17.29976 -16.91787 -16.61208 -16.13436 -15.96972 -15.26053 -15.07597 -14.93737 -14.64994 -14.18334 -13.94591 -13.84074 -13.57486 -13.48143 -13.21194 -13.15845 -13.01221 -12.77845 -12.58073 -12.23372 -11.92299 -11.42230 -11.27112 -11.18154 -10.89094 -10.76803 -10.71925 -10.54764 -10.52086 -10.48298 -10.42634 -10.22102 -9.92439 -9.84931 -9.61985 -8.96014 -8.78084 -8.60356 -6.81066 -5.78363 -3.25585 0.82359 1.80078 2.28250 2.41977 2.61749 2.86183 2.96664 3.31250 3.37016 3.39911 3.90101 3.94536 4.06259 4.28806 4.39788 4.42428 4.54311 4.73741 4.81152 4.90902 4.98561 5.03458 5.09005 5.26952 5.37597 5.40585 5.47774 5.62540 5.75000 5.84870 5.90584 5.99986 6.07695 6.15524 6.20323 6.28210 6.39965 6.44221 6.59802 6.70184 6.71102 6.82185 7.30855 7.31791 7.38840 7.61714 7.67630 7.74405 7.86586 8.33138 9.16974 9.80861 10.30302 11.26385 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.002393 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.077648 B =11696.542812 C =11922.268688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.255 4.255 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.162 3.838 12 C -0.115 4.115 13 H 0.076 0.924 14 C -0.111 4.111 15 C 0.089 3.911 16 N -0.608 5.608 17 C 0.508 3.492 18 O -0.530 6.530 19 C 0.124 3.876 20 H 0.130 0.870 21 C -0.052 4.052 22 C -0.037 4.037 23 C 0.014 3.986 24 N -0.481 5.481 25 C 0.256 3.744 26 N -0.455 5.455 27 C 0.737 3.263 28 O -0.530 6.530 29 N -0.703 5.703 30 C 0.110 3.890 31 H 0.031 0.969 32 H 0.040 0.960 33 H -0.003 1.003 34 H 0.252 0.748 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.182 0.818 44 H 0.219 0.781 45 H 0.425 0.575 46 H 0.072 0.928 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -9.908 -15.571 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.384 4.384 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.033 3.967 12 C -0.137 4.137 13 H 0.095 0.905 14 C -0.148 4.148 15 C -0.033 4.033 16 N -0.342 5.342 17 C 0.293 3.707 18 O -0.406 6.406 19 C 0.014 3.986 20 H 0.148 0.852 21 C -0.091 4.091 22 C -0.144 4.144 23 C -0.128 4.128 24 N -0.199 5.199 25 C -0.027 4.027 26 N -0.160 5.160 27 C 0.438 3.562 28 O -0.402 6.402 29 N -0.360 5.360 30 C -0.013 4.013 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.199 0.801 44 H 0.236 0.764 45 H 0.264 0.736 46 H 0.091 0.909 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.598 -11.442 -15.565 21.145 hybrid contribution 1.379 1.533 0.344 2.091 sum 9.977 -9.909 -15.221 20.722 Atomic orbital electron populations 1.20797 0.82657 0.95350 0.99506 1.43855 1.01768 1.00515 1.85999 1.19186 0.98093 0.85370 1.35756 0.91156 1.25041 0.97928 0.98519 0.98231 1.70073 1.19511 1.27145 1.38363 0.86300 0.78665 0.84367 0.77450 1.21533 1.21831 1.20517 1.20600 0.96428 0.88726 0.90912 1.23263 0.97245 0.91592 1.01641 0.90543 1.22573 0.98608 0.97360 0.96295 1.22377 1.00753 0.80767 0.99422 1.48582 1.57872 1.06144 1.21630 1.20494 0.79840 0.84075 0.86308 1.90754 1.56325 1.24390 1.69132 1.21053 0.95589 0.88828 0.93142 0.85238 1.20566 0.97275 0.92838 0.98457 1.21324 0.95559 0.87290 1.10193 1.21912 0.95277 0.92912 1.02697 1.70799 1.21328 1.07074 1.20680 1.25347 0.84187 0.96334 0.96817 1.43793 1.12962 1.09235 1.49978 1.15540 0.79759 0.83998 0.76911 1.91024 1.61543 1.28222 1.59407 1.44703 1.12799 1.12126 1.66331 1.22481 0.95632 0.99570 0.83615 0.95114 0.94106 0.98410 0.93739 0.94294 0.93192 0.90409 0.89177 0.91403 0.91490 0.86453 0.87425 0.80110 0.76415 0.73570 0.90908 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 8.98 59.85 0.54 4.27 16 2 N -0.60 -13.58 2.87 -181.12 -0.52 -14.10 16 3 C -0.25 -6.28 8.98 -15.06 -0.14 -6.41 16 4 H 0.07 1.65 6.69 -52.48 -0.35 1.29 16 5 C 0.00 0.03 5.09 -17.43 -0.09 -0.05 16 6 N -0.91 -25.27 10.72 55.49 0.59 -24.68 16 7 Si 0.90 20.43 29.57 -169.99 -5.03 15.41 16 8 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 C 0.16 2.91 5.20 -4.04 -0.02 2.89 16 12 C -0.12 -1.66 3.31 -88.21 -0.29 -1.95 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.11 -1.41 5.12 -24.90 -0.13 -1.54 16 15 C 0.09 0.80 6.11 -3.07 -0.02 0.78 16 16 N -0.61 -6.82 3.33 -170.22 -0.57 -7.39 16 17 C 0.51 5.99 6.74 -10.99 -0.07 5.92 16 18 O -0.53 -8.71 16.30 5.56 0.09 -8.62 16 19 C 0.12 0.92 2.98 -69.20 -0.21 0.72 16 20 H 0.13 0.49 7.53 -51.93 -0.39 0.10 16 21 C -0.05 -0.33 5.89 -27.71 -0.16 -0.50 16 22 C -0.04 -0.37 6.38 -81.44 -0.52 -0.89 16 23 C 0.01 0.15 11.83 -18.08 -0.21 -0.07 16 24 N -0.48 -5.88 11.27 -14.84 -0.17 -6.05 16 25 C 0.26 2.92 12.54 -90.14 -1.13 1.79 16 26 N -0.45 -5.32 2.86 -64.88 -0.19 -5.50 16 27 C 0.74 8.96 7.94 -87.04 -0.69 8.27 16 28 O -0.53 -7.80 17.76 5.38 0.10 -7.70 16 29 N -0.70 -6.27 4.82 -60.05 -0.29 -6.56 16 30 C 0.11 1.44 6.40 -2.27 -0.01 1.42 16 31 H 0.03 0.78 7.34 -51.93 -0.38 0.40 16 32 H 0.04 1.01 7.33 -51.93 -0.38 0.63 16 33 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.05 0.91 8.00 -51.93 -0.42 0.49 16 37 H 0.08 1.07 7.39 -51.93 -0.38 0.69 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 40 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 41 H 0.12 0.64 6.51 -51.93 -0.34 0.31 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.22 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.43 2.85 8.90 -40.82 -0.36 2.48 16 46 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 47 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -34.98 379.68 -10.10 -45.07 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.69 Total: -0.25 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: -3.16 Total: 14.65 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -1.13 Total: -64.27 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.19 Total: -16.33 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.98 -10.10 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567733682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.468 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds