Wall clock time and date at job start Wed Apr 1 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 120.00088 * 2 1 4 4 H 1.08008 * 119.99880 * 202.73892 * 3 2 1 5 5 C 1.38809 * 120.00556 * 22.73734 * 3 2 1 6 6 N 1.31627 * 119.99595 * 13.36952 * 5 3 2 7 7 Si 1.86793 * 120.00363 * 193.37489 * 5 3 2 8 8 H 1.48497 * 109.47288 * 89.99973 * 7 5 3 9 9 H 1.48505 * 109.47075 * 209.99796 * 7 5 3 10 10 H 1.48501 * 109.46993 * 329.99390 * 7 5 3 11 11 C 1.46497 * 119.99454 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47057 * 90.00386 * 11 2 1 13 13 H 1.09002 * 110.91623 * 302.54675 * 12 11 2 14 14 C 1.55160 * 111.00618 * 66.45041 * 12 11 2 15 15 C 1.54320 * 103.10435 * 153.66522 * 14 12 11 16 16 N 1.47023 * 107.27054 * 337.72002 * 15 14 12 17 17 C 1.34779 * 125.64827 * 178.97541 * 16 15 14 18 18 O 1.21280 * 120.00059 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99938 * 359.97438 * 17 16 15 20 20 H 1.09003 * 109.10551 * 40.86810 * 19 17 16 21 21 C 1.53354 * 109.11058 * 281.80124 * 19 17 16 22 22 C 1.50670 * 107.83901 * 282.53885 * 21 19 17 23 23 C 1.33050 * 130.83263 * 153.10083 * 22 21 19 24 24 N 1.34739 * 108.03499 * 179.37230 * 23 22 21 25 25 C 1.30819 * 109.53296 * 359.97357 * 24 23 22 26 26 N 1.35008 * 108.36330 * 0.35006 * 25 24 23 27 27 C 1.34583 * 131.40828 * 180.24362 * 26 25 24 28 28 O 1.21484 * 120.69103 * 9.40036 * 27 26 25 29 29 N 1.34833 * 118.61418 * 189.37817 * 27 26 25 30 30 C 1.47422 * 108.70355 * 358.93922 * 16 15 14 31 31 H 1.08998 * 109.46788 * 275.13780 * 1 2 3 32 32 H 1.09002 * 109.46564 * 35.13263 * 1 2 3 33 33 H 1.08994 * 109.47054 * 155.13100 * 1 2 3 34 34 H 0.96994 * 119.99642 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.47834 * 330.00141 * 11 2 1 36 36 H 1.09003 * 109.47265 * 209.99797 * 11 2 1 37 37 H 1.09005 * 110.72047 * 35.21346 * 14 12 11 38 38 H 1.08994 * 110.71841 * 272.12247 * 14 12 11 39 39 H 1.08997 * 109.88389 * 97.13359 * 15 14 12 40 40 H 1.08995 * 109.88322 * 218.30076 * 15 14 12 41 41 H 1.08994 * 109.78849 * 42.12688 * 21 19 17 42 42 H 1.09003 * 109.78665 * 162.95773 * 21 19 17 43 43 H 1.07995 * 125.98405 * 359.41709 * 23 22 21 44 44 H 1.08003 * 125.82594 * 180.39003 * 25 24 23 45 45 H 0.97005 * 118.56031 * 190.88241 * 29 27 26 46 46 H 1.09001 * 110.36820 * 142.96957 * 30 16 15 47 47 H 1.09006 * 110.36903 * 265.18251 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2222 -0.3616 5 6 1.5367 2.3414 0.4646 6 7 0.4111 2.2622 1.1423 7 14 2.3090 4.0085 0.1279 8 1 1.7882 4.5454 -1.1549 9 1 1.9686 4.9434 1.2304 10 1 3.7842 3.8622 0.0409 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4417 13 1 1.5158 -1.8054 -1.9912 14 6 3.4224 -0.7355 -2.1594 15 6 4.0771 -1.6237 -3.2383 16 7 3.9424 -3.0192 -2.7955 17 6 4.3710 -4.1029 -3.4726 18 8 4.2063 -5.2116 -3.0093 19 6 5.0548 -3.9370 -4.8052 20 1 5.7312 -3.0836 -4.7554 21 6 3.9964 -3.6750 -5.8835 22 6 3.3446 -4.9911 -6.2199 23 6 2.1302 -5.2657 -6.6890 24 7 2.0323 -6.6013 -6.8370 25 6 3.1551 -7.1652 -6.4726 26 7 4.0063 -6.1974 -6.0708 27 6 5.2705 -6.2575 -5.6133 28 8 5.8989 -7.2961 -5.6621 29 7 5.8253 -5.1409 -5.1001 30 6 3.2618 -3.0367 -1.4880 31 1 -0.3633 0.0920 1.0235 32 1 -0.3632 0.8405 -0.5914 33 1 -0.3633 -0.9323 -0.4322 34 1 -0.0170 3.0696 1.4673 35 1 1.6083 -2.0283 0.5147 36 1 3.1499 -1.1383 0.5143 37 1 4.1722 -0.3566 -1.4648 38 1 2.8731 0.0867 -2.6179 39 1 3.5665 -1.4863 -4.1914 40 1 5.1315 -1.3671 -3.3399 41 1 3.2482 -2.9788 -5.5046 42 1 4.4706 -3.2601 -6.7729 43 1 1.3583 -4.5442 -6.9127 44 1 3.3656 -8.2244 -6.4907 45 1 6.7784 -5.1375 -4.9192 46 1 2.5906 -3.8930 -1.4211 47 1 3.9929 -3.0647 -0.6800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567733682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:28 Heat of formation + Delta-G solvation = 21.011089 kcal Electronic energy + Delta-G solvation = -31201.062650 eV Core-core repulsion = 26999.586636 eV Total energy + Delta-G solvation = -4201.476014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.18771 -41.41927 -40.44648 -39.05076 -37.31191 -37.03294 -34.30954 -33.91538 -33.01055 -32.09833 -30.38330 -29.86085 -27.91931 -27.23326 -25.79142 -25.23016 -23.95820 -23.11704 -22.59850 -21.24975 -21.02627 -20.05099 -19.17523 -18.74061 -18.47718 -18.10454 -17.47183 -17.22855 -16.83005 -16.70173 -16.06824 -15.79111 -15.67907 -15.32294 -15.09862 -14.95007 -14.68959 -14.59474 -14.46226 -14.18812 -13.83337 -13.77125 -13.44841 -13.42430 -13.12995 -12.93020 -12.78031 -12.56121 -12.30823 -12.14657 -12.10823 -11.93502 -11.71439 -11.56874 -11.50806 -11.39044 -11.36311 -11.32875 -10.56510 -10.43507 -9.69806 -9.66686 -8.69663 -7.73630 -5.22115 0.01634 1.04325 1.44056 1.53541 1.54051 1.61938 1.62452 1.83839 2.04375 2.22500 2.58175 3.23359 3.36772 3.38456 3.41088 3.59119 3.62906 3.76875 3.82090 3.99458 4.05377 4.17961 4.23333 4.37655 4.44222 4.51655 4.61955 4.66153 4.70731 4.80218 4.88554 4.91636 4.94484 5.07460 5.17140 5.21442 5.29504 5.38710 5.45472 5.49887 5.56017 5.56543 5.73233 5.78902 5.92378 6.40410 6.46311 6.60824 6.81758 6.99642 7.23011 7.95185 8.40975 9.30363 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.002393 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.077648 B =11696.542812 C =11922.268688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.613 5.613 3 C -0.243 4.243 4 H 0.086 0.914 5 C -0.062 4.062 6 N -0.946 5.946 7 Si 0.964 3.036 8 H -0.287 1.287 9 H -0.307 1.307 10 H -0.262 1.262 11 C 0.159 3.841 12 C -0.104 4.104 13 H 0.069 0.931 14 C -0.110 4.110 15 C 0.094 3.906 16 N -0.605 5.605 17 C 0.503 3.497 18 O -0.585 6.585 19 C 0.129 3.871 20 H 0.184 0.816 21 C -0.050 4.050 22 C -0.037 4.037 23 C -0.007 4.007 24 N -0.505 5.505 25 C 0.235 3.765 26 N -0.464 5.464 27 C 0.730 3.270 28 O -0.568 6.568 29 N -0.691 5.691 30 C 0.117 3.883 31 H -0.001 1.001 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.243 0.757 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.204 0.796 44 H 0.231 0.769 45 H 0.436 0.564 46 H 0.055 0.945 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -8.512 -17.808 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.336 5.336 3 C -0.373 4.373 4 H 0.104 0.896 5 C -0.256 4.256 6 N -0.594 5.594 7 Si 0.793 3.207 8 H -0.214 1.214 9 H -0.235 1.235 10 H -0.186 1.186 11 C 0.033 3.967 12 C -0.126 4.126 13 H 0.087 0.913 14 C -0.148 4.148 15 C -0.027 4.027 16 N -0.338 5.338 17 C 0.291 3.709 18 O -0.465 6.465 19 C 0.020 3.980 20 H 0.201 0.799 21 C -0.088 4.088 22 C -0.143 4.143 23 C -0.148 4.148 24 N -0.222 5.222 25 C -0.047 4.047 26 N -0.169 5.169 27 C 0.431 3.569 28 O -0.442 6.442 29 N -0.347 5.347 30 C -0.007 4.007 31 H 0.017 0.983 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.153 0.847 42 H 0.166 0.834 43 H 0.221 0.779 44 H 0.247 0.753 45 H 0.277 0.723 46 H 0.074 0.926 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.944 -10.021 -17.834 23.200 hybrid contribution 0.633 1.024 1.103 1.633 sum 11.577 -8.997 -16.730 22.246 Atomic orbital electron populations 1.20510 0.83329 0.95702 0.97360 1.44086 1.01728 1.01714 1.86104 1.19617 0.98431 0.85864 1.33389 0.89603 1.25816 0.98792 1.01937 0.99078 1.70261 1.21369 1.27190 1.40612 0.85302 0.78768 0.80151 0.76480 1.21352 1.23488 1.18597 1.20737 0.95695 0.86807 0.93471 1.22890 0.97796 0.93049 0.98841 0.91277 1.22491 0.97865 0.97298 0.97142 1.22528 1.03093 0.78066 0.98985 1.48590 1.57166 1.07319 1.20679 1.21334 0.79130 0.83063 0.87418 1.90748 1.58485 1.26527 1.70730 1.21370 0.96530 0.89523 0.90534 0.79917 1.20874 0.97312 0.91077 0.99585 1.21985 0.95332 0.88173 1.08800 1.22383 0.96394 0.92614 1.03394 1.70767 1.21837 1.08429 1.21209 1.25695 0.84408 0.97233 0.97405 1.43906 1.12959 1.10010 1.49998 1.15802 0.79738 0.84399 0.76938 1.90989 1.62460 1.29781 1.61004 1.44716 1.13451 1.11696 1.64858 1.22208 0.95360 0.97906 0.85215 0.98284 0.96473 0.95520 0.94743 0.94368 0.93329 0.91364 0.90300 0.88098 0.87795 0.84747 0.83379 0.77912 0.75282 0.72349 0.92618 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.24 8.98 127.77 1.15 9.39 16 2 N -0.61 -27.58 2.87 -726.93 -2.09 -29.67 16 3 C -0.24 -11.77 8.98 84.03 0.75 -11.01 16 4 H 0.09 3.83 6.69 -2.91 -0.02 3.81 16 5 C -0.06 -3.25 5.09 84.86 0.43 -2.82 16 6 N -0.95 -54.14 10.72 21.65 0.23 -53.91 16 7 Si 0.96 41.77 29.57 68.60 2.03 43.80 16 8 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 9 H -0.31 -13.99 7.11 99.48 0.71 -13.29 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 11 C 0.16 5.60 5.20 86.38 0.45 6.05 16 12 C -0.10 -2.79 3.31 -9.23 -0.03 -2.82 16 13 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.11 -2.42 5.12 31.78 0.16 -2.26 16 15 C 0.09 1.15 6.11 86.73 0.53 1.68 16 16 N -0.60 -11.27 3.33 -810.84 -2.70 -13.97 16 17 C 0.50 10.20 6.74 87.66 0.59 10.79 16 18 O -0.59 -18.53 16.30 -3.03 -0.05 -18.58 16 19 C 0.13 1.29 2.98 44.47 0.13 1.42 16 20 H 0.18 -0.03 7.53 -2.39 -0.02 -0.05 16 21 C -0.05 -0.37 5.89 29.96 0.18 -0.20 16 22 C -0.04 -0.63 6.38 40.35 0.26 -0.37 16 23 C -0.01 -0.13 11.83 83.09 0.98 0.85 16 24 N -0.50 -12.20 11.27 -200.85 -2.26 -14.47 16 25 C 0.23 5.41 12.54 180.18 2.26 7.67 16 26 N -0.46 -10.35 2.86 -477.58 -1.36 -11.71 16 27 C 0.73 16.89 7.94 179.10 1.42 18.31 16 28 O -0.57 -16.71 17.76 -3.67 -0.07 -16.78 16 29 N -0.69 -10.18 4.82 -462.17 -2.23 -12.41 16 30 C 0.12 2.85 6.40 87.02 0.56 3.41 16 31 H 0.00 -0.06 7.34 -2.39 -0.02 -0.08 16 32 H 0.02 0.85 7.33 -2.39 -0.02 0.83 16 33 H 0.03 1.06 8.03 -2.39 -0.02 1.04 16 34 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.04 1.33 8.07 -2.38 -0.02 1.31 16 36 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 37 H 0.07 1.65 7.39 -2.38 -0.02 1.63 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.10 0.67 6.72 -2.39 -0.02 0.66 16 40 H 0.10 0.64 7.94 -2.39 -0.02 0.62 16 41 H 0.13 0.63 6.51 -2.39 -0.02 0.61 16 42 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.23 4.21 8.06 -2.91 -0.02 4.19 16 45 H 0.44 4.46 8.90 -92.70 -0.83 3.63 16 46 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 47 H 0.07 1.68 8.05 -2.38 -0.02 1.66 16 Total: -1.00 -80.99 379.68 1.51 -79.48 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.18 Total: 8.12 kcal Atomic # 6 Polarization: 30.27 SS G_CDS: 9.82 Total: 40.10 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -10.41 Total: -136.13 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.11 Total: -35.36 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -80.99 1.51 -79.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567733682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.489 kcal (2) G-P(sol) polarization free energy of solvation -80.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds