Wall clock time and date at job start Wed Apr 1 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28440 * 125.18855 * 2 1 4 4 C 1.30864 * 110.92364 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.06958 * 179.97438 * 4 3 2 6 6 C 1.52995 * 117.49883 * 163.77356 * 5 4 3 7 7 C 1.53004 * 117.49622 * 95.11539 * 5 4 3 8 8 C 1.39671 * 107.86295 * 359.77716 * 4 3 2 9 9 C 1.36592 * 125.18704 * 180.02562 * 2 1 3 10 10 C 1.47170 * 126.88729 * 359.94766 * 9 2 1 11 11 O 1.21624 * 119.99568 * 4.86133 * 10 9 2 12 12 N 1.34773 * 119.99906 * 184.86768 * 10 9 2 13 13 C 1.46504 * 119.99620 * 174.61533 * 12 10 9 14 14 C 1.53940 * 113.73010 * 251.44607 * 13 12 10 15 15 N 1.47962 * 86.17995 * 221.92061 * 14 13 12 16 16 C 1.46899 * 111.00068 * 137.58205 * 15 14 13 17 17 C 1.50700 * 109.46480 * 70.64104 * 16 15 14 18 18 O 1.21284 * 120.00773 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99672 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00404 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99288 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00357 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00158 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99852 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47033 * 60.00790 * 24 22 20 26 26 H 1.48508 * 109.46831 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47546 * 300.00221 * 24 22 20 28 28 C 1.47966 * 90.76116 * 24.69117 * 15 14 13 29 29 H 1.09001 * 109.47066 * 264.17627 * 1 2 3 30 30 H 1.09002 * 109.46843 * 24.17049 * 1 2 3 31 31 H 1.08996 * 109.47015 * 144.16546 * 1 2 3 32 32 H 1.08991 * 115.54953 * 309.44633 * 5 4 3 33 33 H 1.09003 * 117.49929 * 0.02562 * 6 5 4 34 34 H 1.08996 * 117.50191 * 145.02219 * 6 5 4 35 35 H 1.08996 * 117.49878 * 214.97977 * 7 5 4 36 36 H 1.09003 * 117.49935 * 359.97438 * 7 5 4 37 37 H 1.08008 * 127.32465 * 180.23786 * 8 4 3 38 38 H 0.96996 * 120.00594 * 354.33267 * 12 10 9 39 39 H 1.08995 * 112.93593 * 23.15621 * 13 12 10 40 40 H 1.08997 * 113.76069 * 336.24179 * 14 13 12 41 41 H 1.09003 * 113.75259 * 107.60619 * 14 13 12 42 42 H 1.08995 * 109.47121 * 190.64291 * 16 15 14 43 43 H 1.09001 * 109.46847 * 310.64481 * 16 15 14 44 44 H 0.97008 * 120.00299 * 359.97438 * 19 17 16 45 45 H 0.97004 * 120.00365 * 179.97438 * 23 22 20 46 46 H 1.09002 * 113.75854 * 220.98699 * 28 15 14 47 47 H 1.09003 * 113.85451 * 89.64276 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0005 5 6 4.6336 1.6892 -0.0013 6 6 6.0093 1.1371 0.3774 7 6 5.2553 2.0472 1.3502 8 6 3.5612 -0.6667 0.0042 9 6 2.2522 -1.1163 -0.0005 10 6 1.7992 -2.5166 -0.0001 11 8 0.6134 -2.7721 -0.0884 12 7 2.6984 -3.5157 0.0984 13 6 2.2420 -4.9027 0.2177 14 6 2.4616 -5.5090 1.6155 15 7 2.8966 -6.7333 0.9076 16 6 4.0872 -7.3138 1.5427 17 6 3.7074 -7.9056 2.8755 18 8 2.5579 -7.8498 3.2585 19 7 4.6450 -8.4969 3.6421 20 6 4.2997 -9.0348 4.8549 21 1 3.2761 -8.9851 5.1959 22 6 5.2663 -9.6449 5.6449 23 7 6.5116 -9.7059 5.2298 24 14 4.7955 -10.3785 7.2971 25 1 3.7756 -11.4388 7.0953 26 1 5.9993 -10.9648 7.9394 27 1 4.2377 -9.3147 8.1702 28 6 3.2659 -5.9371 -0.2836 29 1 -0.3633 -0.1043 1.0224 30 1 -0.3633 0.9376 -0.4208 31 1 -0.3633 -0.8331 -0.6016 32 1 4.5963 2.4700 -0.7607 33 1 6.0754 0.0780 0.6266 34 1 6.8772 1.5550 -0.1327 35 1 5.6273 3.0635 1.4796 36 1 4.8249 1.5873 2.2398 37 1 4.4595 -1.2664 0.0087 38 1 3.6477 -3.3168 0.0861 39 1 1.2368 -5.0544 -0.1753 40 1 3.2555 -5.0251 2.1844 41 1 1.5429 -5.6359 2.1883 42 1 4.4966 -8.0946 0.9018 43 1 4.8359 -6.5355 1.6907 44 1 5.5644 -8.5419 3.3357 45 1 7.1865 -10.1315 5.7815 46 1 2.9900 -6.4060 -1.2281 47 1 4.2950 -5.5778 -0.2719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567794680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:25 Heat of formation + Delta-G solvation = 50.349947 kcal Electronic energy + Delta-G solvation = -29426.805997 eV Core-core repulsion = 25226.602211 eV Total energy + Delta-G solvation = -4200.203786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.66382 -41.60555 -40.24024 -39.30192 -38.08060 -35.99020 -35.37144 -33.88740 -33.30574 -32.30300 -30.82393 -28.24514 -27.38701 -27.10129 -25.63883 -24.46065 -23.69029 -23.10463 -21.71276 -21.47783 -20.98578 -20.25253 -19.89648 -18.86948 -17.92519 -17.72855 -17.44195 -17.10028 -16.65218 -16.56908 -16.46503 -16.00972 -15.76412 -15.52928 -15.36362 -15.22284 -14.87188 -14.74344 -14.27998 -13.81811 -13.73375 -13.59664 -13.52276 -13.44087 -13.15565 -12.91863 -12.86287 -12.46836 -12.40873 -12.29242 -12.14150 -12.09061 -11.81083 -11.53566 -11.50367 -11.33836 -11.17191 -10.41302 -10.34340 -10.10233 -10.01896 -9.82528 -9.75106 -8.47316 -5.95708 0.11634 1.27192 1.38602 1.40829 1.41361 1.51269 1.98552 2.04366 2.05489 2.28765 2.83397 2.93334 3.18968 3.21811 3.33109 3.48453 3.53279 3.78650 3.88529 4.03372 4.10903 4.14082 4.20580 4.25195 4.28245 4.34884 4.38957 4.44610 4.45773 4.55306 4.57668 4.68503 4.76629 4.83084 4.86899 4.94216 5.07439 5.24389 5.28620 5.33061 5.34707 5.40577 5.43340 5.64506 5.85531 6.05035 6.29629 6.60118 6.92395 7.01560 7.12623 7.55952 8.12420 8.69767 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.002045 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.176621 B =13690.222939 C =14818.038551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.266 5.266 3 N -0.292 5.292 4 C 0.046 3.954 5 C -0.090 4.090 6 C -0.150 4.150 7 C -0.171 4.171 8 C -0.171 4.171 9 C -0.054 4.054 10 C 0.595 3.405 11 O -0.569 6.569 12 N -0.687 5.687 13 C 0.132 3.868 14 C 0.004 3.996 15 N -0.479 5.479 16 C 0.026 3.974 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.010 3.990 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.190 0.810 38 H 0.419 0.581 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.117 0.883 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 22.237 -15.342 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.053 5.053 3 N -0.126 5.126 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.187 4.187 7 C -0.209 4.209 8 C -0.200 4.200 9 C -0.183 4.183 10 C 0.381 3.619 11 O -0.448 6.448 12 N -0.339 5.339 13 C 0.026 3.974 14 C -0.126 4.126 15 N -0.203 5.203 16 C -0.105 4.105 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.198 1.198 28 C -0.118 4.118 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.207 0.793 38 H 0.258 0.742 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.053 22.316 -15.105 26.968 hybrid contribution 1.362 -0.604 1.165 1.892 sum 0.309 21.712 -13.941 25.804 Atomic orbital electron populations 1.22464 0.71443 1.06417 1.05310 1.45805 1.08586 1.01511 1.49392 1.73093 1.04614 1.13867 1.21041 1.21478 0.91003 0.93515 1.04969 1.20144 0.89782 0.99934 1.01068 1.23150 0.93290 1.00533 1.01763 1.23056 1.03433 1.01873 0.92575 1.22422 0.95832 0.94782 1.06943 1.21439 0.92146 0.89351 1.15322 1.17077 0.85541 0.83640 0.75648 1.90790 1.17587 1.84906 1.51514 1.45526 1.10238 1.05157 1.73004 1.22890 1.00674 0.78706 0.95147 1.24266 1.01334 0.90131 0.96874 1.68362 1.25966 1.20829 1.05109 1.22367 0.93495 1.01477 0.93206 1.20845 0.85580 0.83175 0.87919 1.90507 1.21380 1.63599 1.75308 1.41924 1.10639 1.51101 1.17404 1.19580 0.96043 1.34981 0.95749 0.90652 1.25981 0.94711 0.97450 1.02937 1.69648 1.01648 1.44590 1.40027 0.85042 0.77855 0.78430 0.77341 1.19879 1.19303 1.19836 1.24520 0.99304 0.91708 0.96302 0.89359 0.86853 0.87913 0.85852 0.87732 0.86189 0.86957 0.89927 0.79255 0.74212 0.86852 0.90773 0.92038 0.86692 0.89596 0.76863 0.91246 0.86525 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.70 127.77 1.37 2.79 16 2 N -0.27 -5.85 3.75 -356.00 -1.33 -7.19 16 3 N -0.29 -6.65 11.90 -47.49 -0.57 -7.22 16 4 C 0.05 0.87 6.85 43.05 0.30 1.17 16 5 C -0.09 -1.22 6.33 -11.54 -0.07 -1.29 16 6 C -0.15 -1.35 10.03 30.62 0.31 -1.04 16 7 C -0.17 -2.03 10.24 30.62 0.31 -1.72 16 8 C -0.17 -2.85 9.79 22.66 0.22 -2.63 16 9 C -0.05 -1.15 6.96 40.79 0.28 -0.86 16 10 C 0.59 13.62 7.79 86.59 0.67 14.30 16 11 O -0.57 -16.58 14.38 -4.11 -0.06 -16.64 16 12 N -0.69 -12.24 5.35 -449.65 -2.41 -14.65 16 13 C 0.13 2.91 4.47 46.56 0.21 3.12 16 14 C 0.00 0.13 6.56 86.41 0.57 0.69 16 15 N -0.48 -14.40 5.95 -912.83 -5.43 -19.83 16 16 C 0.03 0.83 5.31 85.56 0.45 1.28 16 17 C 0.44 20.47 7.59 87.66 0.67 21.13 16 18 O -0.62 -34.65 15.13 -3.04 -0.05 -34.69 16 19 N -0.57 -28.93 5.29 -306.99 -1.62 -30.55 16 20 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 23 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 24 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 C 0.01 0.19 7.73 86.40 0.67 0.85 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.90 6.56 -2.39 -0.02 1.88 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 0.83 7.21 -2.39 -0.02 0.82 16 34 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.19 1.75 7.00 -2.91 -0.02 1.73 16 38 H 0.42 4.67 7.76 -92.71 -0.72 3.95 16 39 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 40 H 0.07 2.13 7.78 -2.39 -0.02 2.11 16 41 H 0.06 2.31 8.09 -2.39 -0.02 2.29 16 42 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.09 2.20 7.69 -2.39 -0.02 2.19 16 44 H 0.40 18.77 7.90 -92.70 -0.73 18.04 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.11 1.29 7.77 -2.39 -0.02 1.27 16 Total: -1.00 -77.86 396.95 -2.34 -80.21 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.42 Total: 34.64 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 7.23 Total: 19.60 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -11.08 Total: -127.98 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.11 Total: -51.34 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -77.86 -2.34 -80.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567794680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.558 kcal (2) G-P(sol) polarization free energy of solvation -77.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds