Wall clock time and date at job start Wed Apr 1 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34947 * 126.04085 * 2 1 4 4 C 1.35309 * 107.74611 * 179.97438 * 3 2 1 5 5 C 1.39871 * 107.92331 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.89726 * 180.02562 * 5 4 3 7 7 C 1.50708 * 109.47091 * 125.00019 * 6 5 4 8 8 O 1.21282 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99945 * 179.97438 * 7 6 5 10 10 C 1.47860 * 126.92679 * 0.02562 * 9 7 6 11 11 C 1.58960 * 104.77618 * 182.28813 * 10 9 7 12 12 H 1.08997 * 116.84608 * 159.46528 * 11 10 9 13 13 C 1.57089 * 99.52893 * 32.27906 * 11 10 9 14 14 C 1.49283 * 126.92299 * 179.97438 * 9 7 6 15 15 H 1.08994 * 116.12709 * 16.02715 * 14 9 7 16 16 C 1.56014 * 104.12732 * 246.90846 * 14 9 7 17 17 N 1.48283 * 105.07510 * 287.96020 * 16 14 9 18 18 C 1.46896 * 111.00349 * 122.54114 * 17 16 14 19 19 C 1.50696 * 109.46803 * 76.54955 * 18 17 16 20 20 O 1.21295 * 120.00487 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00207 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00353 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00181 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99965 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00528 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99829 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47094 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.47537 * 60.00203 * 26 24 22 29 29 H 1.48499 * 109.47076 * 300.00072 * 26 24 22 30 30 N 1.30838 * 108.20278 * 0.25685 * 5 4 3 31 31 H 1.09007 * 109.47409 * 89.99729 * 1 2 3 32 32 H 1.09006 * 109.47402 * 209.99571 * 1 2 3 33 33 H 1.09003 * 109.46992 * 329.99546 * 1 2 3 34 34 H 1.08004 * 126.12273 * 359.96970 * 3 2 1 35 35 H 1.08004 * 126.03808 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.47451 * 5.00059 * 6 5 4 37 37 H 1.08999 * 109.46779 * 244.99422 * 6 5 4 38 38 H 1.09001 * 110.31616 * 300.82287 * 10 9 7 39 39 H 1.09005 * 110.31401 * 62.90828 * 10 9 7 40 40 H 1.08997 * 112.35625 * 192.43648 * 13 11 10 41 41 H 1.09004 * 112.35558 * 65.02525 * 13 11 10 42 42 H 1.09006 * 110.31910 * 169.05829 * 16 14 9 43 43 H 1.09002 * 110.31877 * 46.86293 * 16 14 9 44 44 H 1.09000 * 109.47261 * 316.55817 * 18 17 16 45 45 H 1.09000 * 109.47758 * 196.55079 * 18 17 16 46 46 H 0.97001 * 119.99736 * 0.02562 * 21 19 18 47 47 H 0.97006 * 119.99439 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6664 0.0006 5 6 3.5346 -0.7322 0.0003 6 6 4.7496 -1.6237 0.0014 7 6 4.6714 -2.5782 1.1651 8 8 3.7226 -2.5380 1.9195 9 7 5.6557 -3.4763 1.3673 10 6 6.8740 -3.6583 0.5494 11 6 7.6304 -4.8869 1.2166 12 1 8.3573 -5.4125 0.5974 13 6 6.3924 -5.7093 1.7253 14 6 5.7362 -4.4872 2.4628 15 1 4.8100 -4.6852 3.0022 16 6 6.9493 -4.0187 3.3248 17 7 8.1460 -4.3209 2.5029 18 6 8.9401 -3.1085 2.2635 19 6 9.7207 -2.7659 3.5061 20 8 9.6254 -3.4634 4.4939 21 7 10.5258 -1.6850 3.5197 22 6 11.2364 -1.3736 4.6500 23 1 11.1515 -1.9947 5.5295 24 6 12.0659 -0.2590 4.6641 25 7 12.1689 0.4970 3.5942 26 14 13.0347 0.1648 6.2040 27 1 13.8369 1.3910 5.9623 28 1 13.9412 -0.9611 6.5442 29 1 12.0959 0.4020 7.3298 30 7 2.2891 -1.1329 -0.0059 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9281 2.1193 -0.0005 35 1 4.4211 1.2962 0.0003 36 1 5.6481 -1.0133 0.0919 37 1 4.7864 -2.1887 -0.9300 38 1 6.6065 -3.8961 -0.4802 39 1 7.4894 -2.7592 0.5819 40 1 6.6777 -6.5046 2.4140 41 1 5.7757 -6.0795 0.9063 42 1 6.9841 -4.5735 4.2625 43 1 6.8842 -2.9482 3.5196 44 1 8.2749 -2.2820 2.0130 45 1 9.6298 -3.2829 1.4377 46 1 10.6023 -1.1274 2.7297 47 1 11.6655 0.2771 2.7946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567856609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:23 Heat of formation + Delta-G solvation = 65.876961 kcal Electronic energy + Delta-G solvation = -30574.054207 eV Core-core repulsion = 26374.523723 eV Total energy + Delta-G solvation = -4199.530484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44202 -41.06739 -38.71414 -37.90657 -34.43551 -34.06567 -33.69522 -31.64400 -30.96061 -30.41322 -29.68623 -29.60180 -26.52323 -26.08531 -24.92938 -23.93871 -21.89106 -21.33742 -20.63644 -20.12693 -19.58468 -18.51746 -17.85862 -17.38291 -17.14924 -16.77051 -16.18046 -15.72439 -15.57315 -15.24570 -14.74714 -14.43236 -14.19974 -14.17038 -13.82707 -13.71490 -13.48175 -13.17961 -12.99779 -12.83121 -12.72352 -12.56198 -12.48279 -12.24326 -12.14560 -12.01006 -11.63330 -11.35602 -11.26394 -11.16680 -11.02754 -10.84174 -10.73853 -10.19043 -9.93458 -9.83530 -9.51024 -9.39535 -8.84791 -8.72172 -8.46177 -8.00887 -7.94565 -6.72631 -3.85464 1.72678 2.30941 2.47871 2.60794 2.91494 3.33113 3.36547 3.56615 3.74652 3.87344 4.14926 4.19454 4.24413 4.36640 4.51738 4.59092 4.63986 4.73110 4.83428 4.89128 4.93175 4.98164 5.09045 5.11929 5.20858 5.23781 5.31814 5.41800 5.49646 5.57840 5.61602 5.62154 5.69996 5.72953 5.73149 5.83380 5.92285 6.00575 6.09643 6.28428 6.44540 6.82416 6.90711 7.05415 7.43622 7.57487 7.83505 8.10911 8.11702 8.63397 8.83984 9.50661 9.92291 10.70962 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.002644 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.097525 B =10588.585966 C =12421.029052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.050 3.950 4 C -0.264 4.264 5 C 0.083 3.917 6 C -0.054 4.054 7 C 0.535 3.465 8 O -0.524 6.524 9 N -0.623 5.623 10 C 0.056 3.944 11 C 0.055 3.945 12 H 0.137 0.863 13 C -0.131 4.131 14 C 0.109 3.891 15 H 0.124 0.876 16 C 0.042 3.958 17 N -0.489 5.489 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.568 6.568 21 N -0.579 5.579 22 C -0.379 4.379 23 H 0.098 0.902 24 C -0.010 4.010 25 N -0.903 5.903 26 Si 1.090 2.910 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.284 1.284 30 N -0.265 5.265 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.174 0.826 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.374 0.626 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.634 -2.876 -14.041 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.096 4.096 4 C -0.293 4.293 5 C -0.084 4.084 6 C -0.096 4.096 7 C 0.323 3.677 8 O -0.399 6.399 9 N -0.359 5.359 10 C -0.069 4.069 11 C -0.053 4.053 12 H 0.154 0.846 13 C -0.169 4.169 14 C 0.006 3.994 15 H 0.142 0.858 16 C -0.087 4.087 17 N -0.212 5.212 18 C -0.097 4.097 19 C 0.232 3.768 20 O -0.451 6.451 21 N -0.218 5.218 22 C -0.509 4.509 23 H 0.116 0.884 24 C -0.212 4.212 25 N -0.542 5.542 26 Si 0.916 3.084 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.211 1.211 30 N -0.087 5.087 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.191 0.809 35 H 0.167 0.833 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.207 0.793 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.814 -3.474 -12.028 22.599 hybrid contribution -1.002 0.817 -1.670 2.112 sum -19.817 -2.657 -13.699 24.237 Atomic orbital electron populations 1.21828 0.74356 1.04541 1.03120 1.48522 1.06611 1.03869 1.57069 1.22493 0.91098 0.93462 1.02502 1.21385 0.97299 0.94039 1.16617 1.21492 0.92638 0.93420 1.00899 1.19987 0.95229 0.95932 0.98416 1.20011 0.81135 0.80296 0.86254 1.90744 1.31952 1.70064 1.47150 1.49220 1.21399 1.35241 1.30065 1.23906 0.86749 1.00732 0.95473 1.25334 0.95130 0.93551 0.91320 0.84578 1.23891 0.95650 0.96827 1.00533 1.24112 0.99073 0.87267 0.88938 0.85812 1.23631 0.86948 1.00967 0.97106 1.64578 1.18135 1.26840 1.11661 1.22141 0.97142 0.91911 0.98460 1.19664 0.84181 0.83408 0.89514 1.90529 1.67439 1.51463 1.35624 1.41928 1.40580 1.24554 1.14704 1.20506 1.23965 1.13051 0.93342 0.88413 1.26476 0.97663 0.92592 1.04505 1.70910 1.41412 1.39001 1.02910 0.83145 0.75875 0.76494 0.72848 1.20438 1.21005 1.21074 1.77398 1.01161 1.07265 1.22919 0.90887 0.89302 0.89541 0.80926 0.83347 0.87023 0.87454 0.90932 0.90141 0.88332 0.89925 0.88890 0.92160 0.92949 0.89333 0.79304 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.47 59.84 0.69 1.36 16 2 N -0.38 -4.25 4.01 -68.16 -0.27 -4.52 16 3 C 0.05 0.49 11.49 -17.23 -0.20 0.29 16 4 C -0.26 -3.00 10.72 -40.01 -0.43 -3.43 16 5 C 0.08 1.10 6.01 -82.41 -0.50 0.60 16 6 C -0.05 -0.60 5.56 -29.03 -0.16 -0.76 16 7 C 0.54 7.67 7.89 -10.98 -0.09 7.58 16 8 O -0.52 -9.69 15.91 5.56 0.09 -9.60 16 9 N -0.62 -7.83 2.95 -154.84 -0.46 -8.29 16 10 C 0.06 0.56 5.72 0.02 0.00 0.56 16 11 C 0.06 0.59 5.32 -60.62 -0.32 0.27 16 12 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -1.32 6.83 -22.28 -0.15 -1.48 16 14 C 0.11 1.40 5.18 -62.54 -0.32 1.08 16 15 H 0.12 1.62 8.05 -51.93 -0.42 1.20 16 16 C 0.04 0.67 5.43 -1.45 -0.01 0.66 16 17 N -0.49 -7.59 4.84 -216.25 -1.05 -8.63 16 18 C 0.04 0.59 4.16 -4.98 -0.02 0.57 16 19 C 0.45 10.51 7.63 -10.99 -0.08 10.42 16 20 O -0.57 -15.58 15.48 5.54 0.09 -15.49 16 21 N -0.58 -14.52 5.28 -10.97 -0.06 -14.58 16 22 C -0.38 -10.71 9.68 -14.93 -0.14 -10.85 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 24 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 25 N -0.90 -25.29 13.68 55.50 0.76 -24.53 16 26 Si 1.09 24.48 29.92 -169.99 -5.09 19.39 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 N -0.27 -3.86 11.94 33.67 0.40 -3.46 16 31 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.11 1.02 8.12 -51.93 -0.42 0.60 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.82 5.57 -51.93 -0.29 0.53 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 43 H 0.06 1.11 7.41 -51.93 -0.39 0.72 16 44 H 0.05 0.82 6.04 -51.93 -0.31 0.51 16 45 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 46 H 0.37 8.61 6.73 -40.82 -0.27 8.34 16 47 H 0.26 6.97 6.78 -40.82 -0.28 6.70 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -39.47 387.21 -8.20 -47.67 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.62 Total: 9.70 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.84 Total: 6.50 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.67 Total: -64.01 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.09 Total: 19.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.47 -8.20 -47.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567856609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.549 kcal (2) G-P(sol) polarization free energy of solvation -39.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds