Wall clock time and date at job start Wed Apr 1 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34947 * 126.04085 * 2 1 4 4 C 1.35309 * 107.74611 * 179.97438 * 3 2 1 5 5 C 1.39871 * 107.92331 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.89726 * 180.02562 * 5 4 3 7 7 C 1.50708 * 109.47091 * 125.00019 * 6 5 4 8 8 O 1.21282 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99945 * 179.97438 * 7 6 5 10 10 C 1.47860 * 126.92679 * 0.02562 * 9 7 6 11 11 C 1.58960 * 104.77618 * 182.28813 * 10 9 7 12 12 H 1.08997 * 116.84608 * 159.46528 * 11 10 9 13 13 C 1.57089 * 99.52893 * 32.27906 * 11 10 9 14 14 C 1.49283 * 126.92299 * 179.97438 * 9 7 6 15 15 H 1.08994 * 116.12709 * 16.02715 * 14 9 7 16 16 C 1.56014 * 104.12732 * 246.90846 * 14 9 7 17 17 N 1.48283 * 105.07510 * 287.96020 * 16 14 9 18 18 C 1.46896 * 111.00349 * 122.54114 * 17 16 14 19 19 C 1.50696 * 109.46803 * 76.54955 * 18 17 16 20 20 O 1.21295 * 120.00487 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00207 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00353 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00181 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99965 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00528 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99829 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47094 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.47537 * 60.00203 * 26 24 22 29 29 H 1.48499 * 109.47076 * 300.00072 * 26 24 22 30 30 N 1.30838 * 108.20278 * 0.25685 * 5 4 3 31 31 H 1.09007 * 109.47409 * 89.99729 * 1 2 3 32 32 H 1.09006 * 109.47402 * 209.99571 * 1 2 3 33 33 H 1.09003 * 109.46992 * 329.99546 * 1 2 3 34 34 H 1.08004 * 126.12273 * 359.96970 * 3 2 1 35 35 H 1.08004 * 126.03808 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.47451 * 5.00059 * 6 5 4 37 37 H 1.08999 * 109.46779 * 244.99422 * 6 5 4 38 38 H 1.09001 * 110.31616 * 300.82287 * 10 9 7 39 39 H 1.09005 * 110.31401 * 62.90828 * 10 9 7 40 40 H 1.08997 * 112.35625 * 192.43648 * 13 11 10 41 41 H 1.09004 * 112.35558 * 65.02525 * 13 11 10 42 42 H 1.09006 * 110.31910 * 169.05829 * 16 14 9 43 43 H 1.09002 * 110.31877 * 46.86293 * 16 14 9 44 44 H 1.09000 * 109.47261 * 316.55817 * 18 17 16 45 45 H 1.09000 * 109.47758 * 196.55079 * 18 17 16 46 46 H 0.97001 * 119.99736 * 0.02562 * 21 19 18 47 47 H 0.97006 * 119.99439 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6664 0.0006 5 6 3.5346 -0.7322 0.0003 6 6 4.7496 -1.6237 0.0014 7 6 4.6714 -2.5782 1.1651 8 8 3.7226 -2.5380 1.9195 9 7 5.6557 -3.4763 1.3673 10 6 6.8740 -3.6583 0.5494 11 6 7.6304 -4.8869 1.2166 12 1 8.3573 -5.4125 0.5974 13 6 6.3924 -5.7093 1.7253 14 6 5.7362 -4.4872 2.4628 15 1 4.8100 -4.6852 3.0022 16 6 6.9493 -4.0187 3.3248 17 7 8.1460 -4.3209 2.5029 18 6 8.9401 -3.1085 2.2635 19 6 9.7207 -2.7659 3.5061 20 8 9.6254 -3.4634 4.4939 21 7 10.5258 -1.6850 3.5197 22 6 11.2364 -1.3736 4.6500 23 1 11.1515 -1.9947 5.5295 24 6 12.0659 -0.2590 4.6641 25 7 12.1689 0.4970 3.5942 26 14 13.0347 0.1648 6.2040 27 1 13.8369 1.3910 5.9623 28 1 13.9412 -0.9611 6.5442 29 1 12.0959 0.4020 7.3298 30 7 2.2891 -1.1329 -0.0059 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9281 2.1193 -0.0005 35 1 4.4211 1.2962 0.0003 36 1 5.6481 -1.0133 0.0919 37 1 4.7864 -2.1887 -0.9300 38 1 6.6065 -3.8961 -0.4802 39 1 7.4894 -2.7592 0.5819 40 1 6.6777 -6.5046 2.4140 41 1 5.7757 -6.0795 0.9063 42 1 6.9841 -4.5735 4.2625 43 1 6.8842 -2.9482 3.5196 44 1 8.2749 -2.2820 2.0130 45 1 9.6298 -3.2829 1.4377 46 1 10.6023 -1.1274 2.7297 47 1 11.6655 0.2771 2.7946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567856609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:22 Heat of formation + Delta-G solvation = 35.070378 kcal Electronic energy + Delta-G solvation = -30575.390080 eV Core-core repulsion = 26374.523723 eV Total energy + Delta-G solvation = -4200.866358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.35641 -42.01435 -40.18610 -39.44627 -36.38275 -35.03980 -34.81408 -33.19809 -32.48744 -31.23447 -30.69445 -30.47037 -28.01866 -26.83480 -26.12654 -25.60630 -22.95098 -22.09288 -21.74311 -21.50297 -20.74197 -19.97397 -19.53970 -18.40374 -18.20801 -17.89610 -17.45507 -16.84292 -16.74335 -16.37854 -16.13182 -15.90894 -15.49035 -15.32860 -15.20939 -14.78011 -14.56460 -14.24854 -14.06437 -13.79795 -13.66500 -13.60974 -13.42662 -13.35941 -13.19578 -13.12665 -12.95732 -12.82956 -12.59267 -12.34239 -12.19087 -12.13387 -11.92099 -11.86937 -11.58627 -11.50348 -11.04957 -10.41124 -10.23656 -10.07991 -9.82146 -9.50711 -9.19060 -8.90680 -6.04113 0.93783 1.52904 1.53134 1.54174 1.59665 1.69296 1.82081 2.01009 2.03913 2.38027 2.62579 3.15088 3.18531 3.27318 3.43503 3.50123 3.59352 3.75058 3.85932 3.90743 4.10069 4.11382 4.14896 4.27936 4.29738 4.38731 4.40808 4.41282 4.50808 4.56993 4.63785 4.68134 4.76565 4.81586 4.86153 4.89867 4.93827 5.01412 5.06755 5.18645 5.59918 5.63614 5.73353 5.89575 5.99771 6.16788 6.45117 6.60903 6.75149 6.78516 7.07693 7.47223 7.97793 8.57471 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.002644 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.097525 B =10588.585966 C =12421.029052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.385 5.385 3 C 0.057 3.943 4 C -0.289 4.289 5 C 0.063 3.937 6 C -0.048 4.048 7 C 0.529 3.471 8 O -0.577 6.577 9 N -0.621 5.621 10 C 0.055 3.945 11 C 0.062 3.938 12 H 0.171 0.829 13 C -0.114 4.114 14 C 0.107 3.893 15 H 0.113 0.887 16 C 0.047 3.953 17 N -0.510 5.510 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.613 6.613 21 N -0.589 5.589 22 C -0.408 4.408 23 H 0.069 0.931 24 C -0.042 4.042 25 N -0.917 5.917 26 Si 1.131 2.869 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.277 1.277 30 N -0.316 5.316 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.214 0.786 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.124 0.876 46 H 0.384 0.616 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 -2.596 -16.669 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.168 5.168 3 C -0.089 4.089 4 C -0.319 4.319 5 C -0.104 4.104 6 C -0.089 4.089 7 C 0.318 3.682 8 O -0.457 6.457 9 N -0.356 5.356 10 C -0.068 4.068 11 C -0.045 4.045 12 H 0.188 0.812 13 C -0.152 4.152 14 C 0.003 3.997 15 H 0.131 0.869 16 C -0.082 4.082 17 N -0.234 5.234 18 C -0.079 4.079 19 C 0.230 3.770 20 O -0.498 6.498 21 N -0.229 5.229 22 C -0.537 4.537 23 H 0.087 0.913 24 C -0.240 4.240 25 N -0.556 5.556 26 Si 0.951 3.049 27 H -0.196 1.196 28 H -0.198 1.198 29 H -0.202 1.202 30 N -0.139 5.139 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.231 0.769 35 H 0.181 0.819 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.142 0.858 46 H 0.219 0.781 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.829 -3.218 -14.720 24.116 hybrid contribution -1.091 0.694 -0.834 1.539 sum -19.921 -2.524 -15.554 25.399 Atomic orbital electron populations 1.22155 0.72271 1.05511 1.04645 1.48905 1.07972 1.03545 1.56387 1.23166 0.90617 0.94798 1.00313 1.21735 0.98729 0.93648 1.17754 1.21920 0.92900 0.94645 1.00911 1.20078 0.95394 0.95505 0.97897 1.20625 0.80570 0.80465 0.86503 1.90714 1.34189 1.71560 1.49200 1.49291 1.21871 1.34525 1.29897 1.24099 0.85451 1.00389 0.96855 1.25636 0.95699 0.93740 0.89395 0.81191 1.23862 0.95218 0.95370 1.00795 1.24031 0.97510 0.89029 0.89149 0.86918 1.23425 0.89142 0.98337 0.97300 1.64477 1.18124 1.26137 1.14684 1.21982 0.97332 0.93219 0.95388 1.20956 0.83104 0.81847 0.91119 1.90500 1.68561 1.52678 1.38074 1.41980 1.41074 1.25497 1.14366 1.20459 1.25747 1.13615 0.93890 0.91302 1.27738 0.97848 0.91961 1.06473 1.70972 1.41930 1.39391 1.03328 0.82662 0.75199 0.76891 0.70153 1.19551 1.19769 1.20243 1.77296 1.02236 1.09522 1.24890 0.89060 0.90354 0.86571 0.76923 0.81931 0.85043 0.84850 0.86951 0.89912 0.88284 0.87306 0.91349 0.95628 0.91447 0.85817 0.78146 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.47 127.77 1.47 2.58 16 2 N -0.39 -8.33 4.01 -369.56 -1.48 -9.81 16 3 C 0.06 1.02 11.49 83.54 0.96 1.98 16 4 C -0.29 -6.27 10.72 21.99 0.24 -6.03 16 5 C 0.06 1.63 6.01 43.10 0.26 1.89 16 6 C -0.05 -0.99 5.56 29.10 0.16 -0.83 16 7 C 0.53 14.94 7.89 87.66 0.69 15.63 16 8 O -0.58 -22.14 15.91 -3.04 -0.05 -22.19 16 9 N -0.62 -14.71 2.95 -762.19 -2.25 -16.96 16 10 C 0.06 0.89 5.72 88.27 0.50 1.39 16 11 C 0.06 1.11 5.32 47.95 0.26 1.36 16 12 H 0.17 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.11 -2.02 6.83 33.47 0.23 -1.79 16 14 C 0.11 2.72 5.18 46.94 0.24 2.96 16 15 H 0.11 3.10 8.05 -2.39 -0.02 3.08 16 16 C 0.05 1.54 5.43 87.08 0.47 2.02 16 17 N -0.51 -15.19 4.84 -838.08 -4.06 -19.25 16 18 C 0.05 1.68 4.16 85.56 0.36 2.03 16 19 C 0.44 21.05 7.63 87.66 0.67 21.72 16 20 O -0.61 -34.81 15.48 -3.08 -0.05 -34.86 16 21 N -0.59 -29.98 5.28 -306.99 -1.62 -31.60 16 22 C -0.41 -23.57 9.68 84.04 0.81 -22.76 16 23 H 0.07 4.32 7.16 -2.91 -0.02 4.29 16 24 C -0.04 -2.30 5.50 84.92 0.47 -1.83 16 25 N -0.92 -51.07 13.68 21.66 0.30 -50.77 16 26 Si 1.13 49.20 29.92 68.60 2.05 51.25 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 30 N -0.32 -9.24 11.94 -47.38 -0.57 -9.81 16 31 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.13 2.12 8.12 -2.39 -0.02 2.10 16 37 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.35 5.57 -2.38 -0.01 1.34 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.03 0.99 7.41 -2.39 -0.02 0.97 16 44 H 0.07 2.00 6.04 -2.39 -0.01 1.99 16 45 H 0.12 3.15 8.03 -2.39 -0.02 3.13 16 46 H 0.38 17.70 6.73 -92.71 -0.62 17.08 16 47 H 0.26 13.89 6.78 -92.70 -0.63 13.26 16 Total: -1.00 -91.56 387.21 0.58 -90.97 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.52 Total: 32.70 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 7.78 Total: 20.32 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -9.68 Total: -138.20 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.10 Total: -57.04 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal Total: -91.56 0.58 -90.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567856609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.045 kcal (2) G-P(sol) polarization free energy of solvation -91.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds