Wall clock time and date at job start Wed Apr 1 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00355 * 2 1 4 4 C 1.50700 * 109.46827 * 66.03999 * 3 2 1 5 5 O 1.21283 * 120.00315 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99637 * 179.97438 * 4 3 2 7 7 C 1.37105 * 119.99636 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00138 * 0.02562 * 7 6 4 9 9 C 1.38954 * 119.99668 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99901 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99656 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46709 * 90.00104 * 11 9 7 13 13 H 1.48504 * 109.46749 * 209.99824 * 11 9 7 14 14 H 1.48491 * 109.46937 * 329.99950 * 11 9 7 15 15 C 1.46899 * 111.00193 * 236.04465 * 2 1 3 16 16 C 1.53003 * 109.47344 * 287.96299 * 15 2 1 17 17 H 1.08990 * 109.99626 * 57.85745 * 16 15 2 18 18 C 1.54332 * 109.87747 * 296.76366 * 16 15 2 19 19 C 1.55157 * 102.93835 * 218.38650 * 18 16 15 20 20 C 1.54909 * 101.58361 * 35.50654 * 19 18 16 21 21 N 1.47022 * 109.88448 * 178.95716 * 16 15 2 22 22 C 1.34770 * 125.64893 * 298.33647 * 21 16 15 23 23 O 1.21515 * 120.00131 * 174.54176 * 22 21 16 24 24 C 1.48145 * 119.99868 * 354.54290 * 22 21 16 25 25 C 1.40113 * 121.14246 * 177.34782 * 24 22 21 26 26 C 1.38501 * 117.82116 * 179.97438 * 25 24 22 27 27 N 1.31920 * 119.96658 * 359.97438 * 26 25 24 28 28 N 1.28279 * 122.51727 * 0.02562 * 27 26 25 29 29 C 1.31925 * 122.32449 * 359.71773 * 28 27 26 30 30 H 1.09005 * 109.47609 * 188.70389 * 1 2 3 31 31 H 1.08998 * 109.47686 * 308.70746 * 1 2 3 32 32 H 1.09007 * 109.47242 * 68.71044 * 1 2 3 33 33 H 1.09000 * 109.47495 * 186.04461 * 3 2 1 34 34 H 1.09005 * 109.47306 * 306.04810 * 3 2 1 35 35 H 0.96992 * 120.00499 * 0.02562 * 6 4 3 36 36 H 0.97003 * 119.99859 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.47126 * 167.95738 * 15 2 1 38 38 H 1.09005 * 109.47021 * 47.96352 * 15 2 1 39 39 H 1.08996 * 110.72041 * 336.75013 * 18 16 15 40 40 H 1.08998 * 110.71843 * 99.85289 * 18 16 15 41 41 H 1.08993 * 111.00914 * 277.43018 * 19 18 16 42 42 H 1.08998 * 110.99916 * 153.57581 * 19 18 16 43 43 H 1.08996 * 110.36876 * 204.15144 * 20 19 18 44 44 H 1.09004 * 110.36672 * 81.82167 * 20 19 18 45 45 H 1.08002 * 121.09180 * 0.02562 * 25 24 22 46 46 H 1.08002 * 120.01618 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.16779 * 180.27733 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 8 1.0052 1.4453 2.1410 6 7 2.0188 3.3198 1.5237 7 6 1.6930 3.9344 2.7051 8 1 1.1306 3.3986 3.4554 9 6 2.0864 5.2467 2.9372 10 7 2.7703 5.8989 2.0240 11 14 1.6418 6.0843 4.5466 12 1 2.7185 5.8476 5.5416 13 1 1.4898 7.5440 4.3195 14 1 0.3639 5.5271 5.0580 15 6 1.9954 -0.7660 -1.1375 16 6 1.7629 -2.2592 -0.8983 17 1 0.6997 -2.4529 -0.7570 18 6 2.5504 -2.7201 0.3463 19 6 3.0567 -4.1280 -0.0646 20 6 3.3374 -3.9290 -1.5750 21 7 2.2643 -3.0331 -2.0434 22 6 1.8168 -2.9394 -3.3112 23 8 2.3719 -3.5566 -4.1986 24 6 0.6482 -2.0839 -3.6229 25 6 0.1968 -1.9255 -4.9398 26 6 -0.9023 -1.1101 -5.1527 27 7 -1.4877 -0.5135 -4.1321 28 7 -1.0794 -0.6543 -2.9242 29 6 -0.0452 -1.4120 -2.6130 30 1 -0.3634 -1.0158 0.1555 31 1 -0.3634 0.6426 0.8019 32 1 -0.3634 0.3731 -0.9576 33 1 3.0797 1.3443 -0.1082 34 1 1.5611 1.9274 -0.8309 35 1 2.5242 3.8010 0.8500 36 1 3.0446 6.8151 2.1858 37 1 3.0639 -0.5764 -1.2399 38 1 1.4832 -0.4601 -2.0498 39 1 3.3882 -2.0510 0.5422 40 1 1.8960 -2.7814 1.2158 41 1 2.2858 -4.8820 0.0934 42 1 3.9698 -4.3866 0.4716 43 1 3.2900 -4.8837 -2.0987 44 1 4.3118 -3.4628 -1.7216 45 1 0.6891 -2.4237 -5.7619 46 1 -1.2804 -0.9634 -6.1537 47 1 0.2660 -1.5092 -1.5834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570541121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:34 Heat of formation + Delta-G solvation = 54.926754 kcal Electronic energy + Delta-G solvation = -31372.158473 eV Core-core repulsion = 27172.153152 eV Total energy + Delta-G solvation = -4200.005321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.01954 -40.27791 -38.88288 -38.01787 -36.29993 -34.02781 -33.74051 -33.16866 -31.70179 -31.26838 -30.57487 -27.96467 -26.63386 -26.06813 -25.17057 -24.49795 -23.38461 -22.12978 -21.19832 -19.98469 -19.21809 -18.59105 -17.87354 -17.60032 -17.27131 -16.60672 -16.10161 -15.86011 -15.52501 -15.25408 -14.91478 -14.82795 -14.59558 -14.44350 -14.20366 -13.76478 -13.66215 -13.47245 -13.38512 -13.11406 -12.92178 -12.56050 -12.16032 -11.90479 -11.53675 -11.47932 -11.44147 -11.35910 -11.23248 -11.03544 -10.95457 -10.83083 -10.77493 -10.60018 -10.39997 -10.26714 -10.22627 -9.95832 -9.48399 -9.17848 -8.48096 -8.01020 -7.92127 -6.42591 -3.83420 -0.04776 0.51132 2.30354 2.36163 3.17329 3.25877 3.26392 3.31865 3.59162 3.71116 3.88224 3.97854 4.04257 4.14775 4.19755 4.24289 4.31999 4.45891 4.53379 4.75247 4.77468 4.88252 5.01185 5.08507 5.17704 5.22978 5.26603 5.38539 5.40464 5.44175 5.53306 5.59990 5.61063 5.71801 5.74380 5.77731 5.84208 5.92720 5.99219 6.06770 6.23532 6.51129 6.92853 7.08249 7.20472 7.54481 7.56287 8.04881 8.32568 8.60090 9.16993 9.52991 10.04169 10.75105 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.002776 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.698342 B =10082.634691 C =11370.907518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.508 5.508 3 C 0.046 3.954 4 C 0.445 3.555 5 O -0.576 6.576 6 N -0.563 5.563 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.021 3.979 16 C 0.116 3.884 17 H 0.091 0.909 18 C -0.107 4.107 19 C -0.138 4.138 20 C 0.107 3.893 21 N -0.604 5.604 22 C 0.580 3.420 23 O -0.527 6.527 24 C -0.141 4.141 25 C -0.057 4.057 26 C 0.031 3.969 27 N -0.224 5.224 28 N -0.238 5.238 29 C 0.029 3.971 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.162 0.838 46 H 0.180 0.820 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 -18.386 -12.256 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.232 5.232 3 C -0.085 4.085 4 C 0.230 3.770 5 O -0.460 6.460 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.122 0.878 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.109 4.109 16 C 0.012 3.988 17 H 0.109 0.891 18 C -0.145 4.145 19 C -0.176 4.176 20 C -0.014 4.014 21 N -0.337 5.337 22 C 0.368 3.632 23 O -0.404 6.404 24 C -0.156 4.156 25 C -0.087 4.087 26 C -0.133 4.133 27 N -0.066 5.066 28 N -0.080 5.080 29 C -0.133 4.133 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.180 0.820 46 H 0.197 0.803 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.189 -18.133 -11.269 21.383 hybrid contribution 1.072 0.388 -1.082 1.571 sum -0.118 -17.746 -12.351 21.621 Atomic orbital electron populations 1.22854 0.86205 1.02544 1.02809 1.61544 1.09018 1.13272 1.39391 1.21882 1.00571 0.88465 0.97587 1.19617 0.85577 0.82990 0.88777 1.90489 1.43879 1.64628 1.46986 1.41859 1.49334 1.10749 1.18034 1.19696 1.32969 0.95460 0.94673 0.87844 1.25262 0.96804 0.96648 0.99202 1.69613 1.38057 1.12262 1.34364 0.85863 0.79106 0.78081 0.81281 1.20417 1.20967 1.19380 1.23085 1.02042 0.92647 0.93099 1.22057 0.99126 0.91006 0.86592 0.89134 1.22543 1.00834 0.95344 0.95773 1.22890 1.02599 0.98005 0.94096 1.22339 0.90166 0.94040 0.94874 1.48417 1.37666 1.40689 1.06931 1.17533 0.82822 0.81379 0.81451 1.90792 1.58239 1.46306 1.45014 1.21156 0.98366 1.00451 0.95581 1.22622 0.94702 0.94424 0.96949 1.24410 0.93534 0.94107 1.01300 1.72920 1.23033 1.15281 0.95358 1.73254 1.10348 1.13084 1.11270 1.26716 0.91399 0.91021 1.04177 0.92284 0.87961 0.94474 0.89365 0.93327 0.77534 0.91873 0.89487 0.93953 0.89284 0.88752 0.90474 0.89192 0.90036 0.90718 0.82007 0.80265 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 7.92 60.06 0.48 0.52 16 2 N -0.51 -7.50 4.15 -244.37 -1.02 -8.51 16 3 C 0.05 0.78 5.44 -4.98 -0.03 0.75 16 4 C 0.45 10.02 7.43 -10.98 -0.08 9.94 16 5 O -0.58 -14.64 13.95 5.56 0.08 -14.57 16 6 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 11 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.02 0.24 3.88 -3.82 -0.01 0.23 16 16 C 0.12 1.14 2.18 -66.95 -0.15 0.99 16 17 H 0.09 0.89 5.08 -51.93 -0.26 0.63 16 18 C -0.11 -0.94 6.19 -24.89 -0.15 -1.09 16 19 C -0.14 -0.91 7.08 -24.58 -0.17 -1.09 16 20 C 0.11 0.87 6.89 -2.53 -0.02 0.85 16 21 N -0.60 -6.06 3.06 -164.08 -0.50 -6.56 16 22 C 0.58 6.82 7.64 -12.20 -0.09 6.72 16 23 O -0.53 -7.34 16.80 5.35 0.09 -7.25 16 24 C -0.14 -1.57 5.53 -104.57 -0.58 -2.15 16 25 C -0.06 -0.53 9.77 -38.78 -0.38 -0.91 16 26 C 0.03 0.28 11.30 -17.42 -0.20 0.08 16 27 N -0.22 -2.84 11.48 30.53 0.35 -2.49 16 28 N -0.24 -3.26 10.33 30.78 0.32 -2.94 16 29 C 0.03 0.35 6.63 -16.96 -0.11 0.23 16 30 H 0.06 0.77 6.55 -51.93 -0.34 0.43 16 31 H 0.10 1.93 5.79 -51.93 -0.30 1.63 16 32 H 0.04 0.56 5.83 -51.93 -0.30 0.26 16 33 H 0.09 1.33 7.86 -51.93 -0.41 0.92 16 34 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.09 0.98 7.78 -51.93 -0.40 0.58 16 38 H 0.04 0.53 4.35 -51.93 -0.23 0.30 16 39 H 0.09 0.85 7.83 -51.93 -0.41 0.44 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.16 1.18 7.80 -52.49 -0.41 0.77 16 46 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.21 2.43 0.50 -52.59 -0.03 2.41 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -32.98 371.61 -7.06 -40.03 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.88 Total: 11.12 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.74 Total: 7.31 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.18 Total: -58.03 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.17 Total: -21.81 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.98 -7.06 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570541121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.957 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds