Wall clock time and date at job start Wed Apr 1 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00355 * 2 1 4 4 C 1.50700 * 109.46827 * 66.03999 * 3 2 1 5 5 O 1.21283 * 120.00315 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99637 * 179.97438 * 4 3 2 7 7 C 1.37105 * 119.99636 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00138 * 0.02562 * 7 6 4 9 9 C 1.38954 * 119.99668 * 180.02562 * 7 6 4 10 10 N 1.31412 * 119.99901 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99656 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46709 * 90.00104 * 11 9 7 13 13 H 1.48504 * 109.46749 * 209.99824 * 11 9 7 14 14 H 1.48491 * 109.46937 * 329.99950 * 11 9 7 15 15 C 1.46899 * 111.00193 * 236.04465 * 2 1 3 16 16 C 1.53003 * 109.47344 * 287.96299 * 15 2 1 17 17 H 1.08990 * 109.99626 * 57.85745 * 16 15 2 18 18 C 1.54332 * 109.87747 * 296.76366 * 16 15 2 19 19 C 1.55157 * 102.93835 * 218.38650 * 18 16 15 20 20 C 1.54909 * 101.58361 * 35.50654 * 19 18 16 21 21 N 1.47022 * 109.88448 * 178.95716 * 16 15 2 22 22 C 1.34770 * 125.64893 * 298.33647 * 21 16 15 23 23 O 1.21515 * 120.00131 * 174.54176 * 22 21 16 24 24 C 1.48145 * 119.99868 * 354.54290 * 22 21 16 25 25 C 1.40113 * 121.14246 * 177.34782 * 24 22 21 26 26 C 1.38501 * 117.82116 * 179.97438 * 25 24 22 27 27 N 1.31920 * 119.96658 * 359.97438 * 26 25 24 28 28 N 1.28279 * 122.51727 * 0.02562 * 27 26 25 29 29 C 1.31925 * 122.32449 * 359.71773 * 28 27 26 30 30 H 1.09005 * 109.47609 * 188.70389 * 1 2 3 31 31 H 1.08998 * 109.47686 * 308.70746 * 1 2 3 32 32 H 1.09007 * 109.47242 * 68.71044 * 1 2 3 33 33 H 1.09000 * 109.47495 * 186.04461 * 3 2 1 34 34 H 1.09005 * 109.47306 * 306.04810 * 3 2 1 35 35 H 0.96992 * 120.00499 * 0.02562 * 6 4 3 36 36 H 0.97003 * 119.99859 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.47126 * 167.95738 * 15 2 1 38 38 H 1.09005 * 109.47021 * 47.96352 * 15 2 1 39 39 H 1.08996 * 110.72041 * 336.75013 * 18 16 15 40 40 H 1.08998 * 110.71843 * 99.85289 * 18 16 15 41 41 H 1.08993 * 111.00914 * 277.43018 * 19 18 16 42 42 H 1.08998 * 110.99916 * 153.57581 * 19 18 16 43 43 H 1.08996 * 110.36876 * 204.15144 * 20 19 18 44 44 H 1.09004 * 110.36672 * 81.82167 * 20 19 18 45 45 H 1.08002 * 121.09180 * 0.02562 * 25 24 22 46 46 H 1.08002 * 120.01618 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.16779 * 180.27733 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 1.2984 5 8 1.0052 1.4453 2.1410 6 7 2.0188 3.3198 1.5237 7 6 1.6930 3.9344 2.7051 8 1 1.1306 3.3986 3.4554 9 6 2.0864 5.2467 2.9372 10 7 2.7703 5.8989 2.0240 11 14 1.6418 6.0843 4.5466 12 1 2.7185 5.8476 5.5416 13 1 1.4898 7.5440 4.3195 14 1 0.3639 5.5271 5.0580 15 6 1.9954 -0.7660 -1.1375 16 6 1.7629 -2.2592 -0.8983 17 1 0.6997 -2.4529 -0.7570 18 6 2.5504 -2.7201 0.3463 19 6 3.0567 -4.1280 -0.0646 20 6 3.3374 -3.9290 -1.5750 21 7 2.2643 -3.0331 -2.0434 22 6 1.8168 -2.9394 -3.3112 23 8 2.3719 -3.5566 -4.1986 24 6 0.6482 -2.0839 -3.6229 25 6 0.1968 -1.9255 -4.9398 26 6 -0.9023 -1.1101 -5.1527 27 7 -1.4877 -0.5135 -4.1321 28 7 -1.0794 -0.6543 -2.9242 29 6 -0.0452 -1.4120 -2.6130 30 1 -0.3634 -1.0158 0.1555 31 1 -0.3634 0.6426 0.8019 32 1 -0.3634 0.3731 -0.9576 33 1 3.0797 1.3443 -0.1082 34 1 1.5611 1.9274 -0.8309 35 1 2.5242 3.8010 0.8500 36 1 3.0446 6.8151 2.1858 37 1 3.0639 -0.5764 -1.2399 38 1 1.4832 -0.4601 -2.0498 39 1 3.3882 -2.0510 0.5422 40 1 1.8960 -2.7814 1.2158 41 1 2.2858 -4.8820 0.0934 42 1 3.9698 -4.3866 0.4716 43 1 3.2900 -4.8837 -2.0987 44 1 4.3118 -3.4628 -1.7216 45 1 0.6891 -2.4237 -5.7619 46 1 -1.2804 -0.9634 -6.1537 47 1 0.2660 -1.5092 -1.5834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570541121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:33 Heat of formation + Delta-G solvation = 30.158208 kcal Electronic energy + Delta-G solvation = -31373.232517 eV Core-core repulsion = 27172.153152 eV Total energy + Delta-G solvation = -4201.079365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.87416 -41.12689 -40.35559 -39.22431 -37.48532 -35.85372 -34.73094 -33.99654 -33.25087 -32.47950 -31.52619 -29.35206 -27.60258 -27.19337 -26.34771 -25.76201 -24.35066 -23.08577 -22.02645 -20.99065 -20.80239 -19.85229 -19.43876 -18.42716 -18.23404 -17.71694 -17.17656 -16.96904 -16.57110 -16.46761 -16.29514 -16.13993 -15.78693 -15.51267 -15.26582 -15.09012 -15.01991 -14.67127 -14.18874 -14.10820 -13.87134 -13.71559 -13.47270 -13.31546 -13.06937 -12.86516 -12.58569 -12.48004 -12.38245 -12.14575 -12.11641 -12.10777 -11.84435 -11.70891 -11.52692 -11.42713 -11.41477 -11.15354 -10.81250 -10.30942 -9.97638 -9.92595 -9.25953 -8.44022 -5.92090 -0.87620 -0.27193 1.39588 1.42995 1.44413 1.53945 1.56239 2.08387 2.29052 2.42552 2.60139 2.89632 3.03758 3.21276 3.22980 3.36900 3.41598 3.47014 3.52311 3.71073 3.79751 4.00075 4.09374 4.16331 4.19486 4.32127 4.33179 4.44501 4.47880 4.51664 4.52175 4.61934 4.64236 4.72487 4.77713 4.92876 4.94862 5.01259 5.14634 5.20066 5.23568 5.39360 5.43924 5.75617 5.95870 6.06406 6.15074 6.62983 6.70122 7.15958 7.48727 7.59600 8.14814 8.73506 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.002776 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.698342 B =10082.634691 C =11370.907518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.512 5.512 3 C 0.057 3.943 4 C 0.446 3.554 5 O -0.606 6.606 6 N -0.576 5.576 7 C -0.329 4.329 8 H 0.082 0.918 9 C -0.014 4.014 10 N -0.923 5.923 11 Si 0.991 3.009 12 H -0.271 1.271 13 H -0.274 1.274 14 H -0.272 1.272 15 C 0.026 3.974 16 C 0.120 3.880 17 H 0.093 0.907 18 C -0.107 4.107 19 C -0.124 4.124 20 C 0.102 3.898 21 N -0.599 5.599 22 C 0.580 3.420 23 O -0.552 6.552 24 C -0.153 4.153 25 C -0.047 4.047 26 C 0.043 3.957 27 N -0.257 5.257 28 N -0.272 5.272 29 C 0.027 3.973 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.276 0.724 37 H 0.096 0.904 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.185 0.815 46 H 0.221 0.779 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -19.465 -13.241 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.236 5.236 3 C -0.074 4.074 4 C 0.233 3.767 5 O -0.492 6.492 6 N -0.214 5.214 7 C -0.458 4.458 8 H 0.099 0.901 9 C -0.214 4.214 10 N -0.564 5.564 11 Si 0.815 3.185 12 H -0.196 1.196 13 H -0.199 1.199 14 H -0.197 1.197 15 C -0.102 4.102 16 C 0.016 3.984 17 H 0.110 0.890 18 C -0.145 4.145 19 C -0.162 4.162 20 C -0.019 4.019 21 N -0.332 5.332 22 C 0.368 3.632 23 O -0.431 6.431 24 C -0.167 4.167 25 C -0.077 4.077 26 C -0.122 4.122 27 N -0.098 5.098 28 N -0.112 5.112 29 C -0.136 4.136 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.203 0.797 46 H 0.237 0.763 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.463 -19.216 -12.247 22.792 hybrid contribution 0.833 0.630 -0.871 1.360 sum 0.371 -18.586 -13.118 22.752 Atomic orbital electron populations 1.22686 0.86644 1.02898 1.01213 1.61497 1.08642 1.12170 1.41266 1.21749 1.02126 0.89311 0.94212 1.20576 0.83745 0.82219 0.90160 1.90470 1.44773 1.65215 1.48742 1.41932 1.50166 1.11637 1.17619 1.19665 1.34188 0.96349 0.95609 0.90051 1.26015 0.96377 0.96699 1.02269 1.69678 1.38400 1.12638 1.35695 0.84951 0.78709 0.77285 0.77562 1.19600 1.19879 1.19681 1.23089 1.02222 0.93291 0.91644 1.22002 0.99502 0.89767 0.87108 0.89017 1.22528 1.00391 0.96648 0.94943 1.22864 1.03655 0.96702 0.92950 1.22535 0.89820 0.93809 0.95767 1.48472 1.37734 1.40487 1.06457 1.17616 0.82789 0.81132 0.81651 1.90776 1.59131 1.47495 1.45717 1.21246 0.98426 1.00685 0.96385 1.22969 0.94264 0.93602 0.96840 1.25026 0.92663 0.92408 1.02078 1.72827 1.24304 1.16823 0.95806 1.73167 1.11403 1.14313 1.12283 1.26661 0.91371 0.91183 1.04383 0.90227 0.91848 0.94372 0.86915 0.92392 0.77226 0.91446 0.88611 0.94216 0.89867 0.89121 0.89683 0.87258 0.89814 0.90124 0.79742 0.76251 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.41 7.92 127.69 1.01 1.42 16 2 N -0.51 -14.80 4.15 -927.04 -3.85 -18.65 16 3 C 0.06 1.90 5.44 85.56 0.47 2.37 16 4 C 0.45 20.45 7.43 87.66 0.65 21.10 16 5 O -0.61 -31.76 13.95 -3.04 -0.04 -31.80 16 6 N -0.58 -29.06 5.29 -306.98 -1.62 -30.69 16 7 C -0.33 -18.39 9.68 84.04 0.81 -17.57 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 10 N -0.92 -49.79 13.05 21.66 0.28 -49.50 16 11 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.03 0.58 3.88 86.30 0.34 0.92 16 16 C 0.12 2.19 2.18 45.35 0.10 2.29 16 17 H 0.09 1.71 5.08 -2.39 -0.01 1.70 16 18 C -0.11 -1.69 6.19 31.79 0.20 -1.49 16 19 C -0.12 -1.33 7.08 31.99 0.23 -1.10 16 20 C 0.10 1.43 6.89 86.85 0.60 2.03 16 21 N -0.60 -11.03 3.06 -791.34 -2.43 -13.45 16 22 C 0.58 12.75 7.64 86.88 0.66 13.42 16 23 O -0.55 -14.54 16.80 -3.76 -0.06 -14.60 16 24 C -0.15 -3.20 5.53 -19.83 -0.11 -3.31 16 25 C -0.05 -0.76 9.77 22.79 0.22 -0.54 16 26 C 0.04 0.69 11.30 84.74 0.96 1.65 16 27 N -0.26 -6.28 11.48 -57.33 -0.66 -6.94 16 28 N -0.27 -7.35 10.33 -56.54 -0.58 -7.93 16 29 C 0.03 0.63 6.63 85.04 0.56 1.20 16 30 H 0.08 2.07 6.55 -2.38 -0.02 2.05 16 31 H 0.06 2.48 5.79 -2.39 -0.01 2.46 16 32 H 0.04 1.16 5.83 -2.38 -0.01 1.15 16 33 H 0.11 3.22 7.86 -2.39 -0.02 3.20 16 34 H 0.06 1.85 8.12 -2.38 -0.02 1.83 16 35 H 0.39 19.09 7.90 -92.71 -0.73 18.36 16 36 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.10 1.97 7.78 -2.38 -0.02 1.95 16 38 H 0.04 0.95 4.35 -2.38 -0.01 0.94 16 39 H 0.08 1.44 7.83 -2.39 -0.02 1.42 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 44 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.19 2.14 7.80 -2.91 -0.02 2.12 16 46 H 0.22 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.21 4.70 0.50 -3.01 0.00 4.70 16 Total: -1.00 -72.79 371.61 0.54 -72.26 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.31 Total: 34.46 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 7.16 Total: 22.07 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -8.86 Total: -127.17 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.11 Total: -46.40 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.79 0.54 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570541121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.417 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds