Wall clock time and date at job start Wed Apr 1 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99990 * 2 1 4 4 C 1.50701 * 109.47333 * 66.04581 * 3 2 1 5 5 O 1.21290 * 119.99701 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.37100 * 119.99697 * 179.97438 * 6 4 3 8 8 H 1.07996 * 119.99951 * 0.02562 * 7 6 4 9 9 C 1.38948 * 119.99628 * 180.02562 * 7 6 4 10 10 N 1.31410 * 120.00134 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00026 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46938 * 89.99766 * 11 9 7 13 13 H 1.48498 * 109.47040 * 210.00364 * 11 9 7 14 14 H 1.48500 * 109.46805 * 330.00117 * 11 9 7 15 15 C 1.46896 * 111.00148 * 236.04080 * 2 1 3 16 16 C 1.52993 * 109.47384 * 293.95706 * 15 2 1 17 17 H 1.09003 * 109.99491 * 64.64007 * 16 15 2 18 18 C 1.54320 * 109.77285 * 185.79308 * 16 15 2 19 19 C 1.55157 * 102.85739 * 141.88930 * 18 16 15 20 20 C 1.54904 * 101.58434 * 324.30162 * 19 18 16 21 21 N 1.47017 * 109.88560 * 303.54387 * 16 15 2 22 22 C 1.34782 * 125.64736 * 61.67654 * 21 16 15 23 23 O 1.21472 * 119.99695 * 359.71617 * 22 21 16 24 24 C 1.48534 * 120.00021 * 179.71791 * 22 21 16 25 25 N 1.32462 * 119.18585 * 0.27840 * 24 22 21 26 26 C 1.32108 * 120.76564 * 180.29166 * 25 24 22 27 27 C 1.38806 * 119.16421 * 359.43625 * 26 25 24 28 28 C 1.38795 * 118.50662 * 0.27938 * 27 26 25 29 29 N 1.32115 * 119.16792 * 359.97438 * 28 27 26 30 30 H 1.08991 * 109.47249 * 183.95521 * 1 2 3 31 31 H 1.09003 * 109.47268 * 303.96036 * 1 2 3 32 32 H 1.08997 * 109.46745 * 63.95256 * 1 2 3 33 33 H 1.09003 * 109.47165 * 186.04168 * 3 2 1 34 34 H 1.08998 * 109.47356 * 306.04244 * 3 2 1 35 35 H 0.96998 * 120.00080 * 0.02562 * 6 4 3 36 36 H 0.97004 * 120.00135 * 180.02562 * 10 9 7 37 37 H 1.09005 * 109.47243 * 173.95205 * 15 2 1 38 38 H 1.09004 * 109.46793 * 53.95865 * 15 2 1 39 39 H 1.08997 * 110.92473 * 23.47468 * 18 16 15 40 40 H 1.09004 * 110.74120 * 260.21425 * 18 16 15 41 41 H 1.09004 * 110.99674 * 206.22885 * 19 18 16 42 42 H 1.09001 * 111.00772 * 82.38128 * 19 18 16 43 43 H 1.09002 * 110.37069 * 278.17491 * 20 19 18 44 44 H 1.08999 * 110.36751 * 155.85391 * 20 19 18 45 45 H 1.08002 * 120.41999 * 179.71785 * 26 25 24 46 46 H 1.08000 * 120.74332 * 180.25646 * 27 26 25 47 47 H 1.08002 * 120.42172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0189 3.3199 1.5237 7 6 1.6923 3.9348 2.7047 8 1 1.1293 3.3991 3.4547 9 6 2.0856 5.2471 2.9367 10 7 2.7702 5.8989 2.0239 11 14 1.6412 6.0847 4.5462 12 1 2.7179 5.8481 5.5411 13 1 1.4890 7.5443 4.3191 14 1 0.3634 5.5275 5.0579 15 6 1.9955 -0.7661 -1.1375 16 6 1.6315 -2.2426 -0.9702 17 1 0.5494 -2.3670 -1.0136 18 6 2.3031 -3.0751 -2.0826 19 6 2.7149 -4.3741 -1.3407 20 6 3.1044 -3.8254 0.0545 21 7 2.1409 -2.7407 0.3158 22 6 1.7821 -2.2849 1.5324 23 8 0.9748 -1.3824 1.6290 24 6 2.3737 -2.8862 2.7550 25 7 3.2567 -3.8658 2.6306 26 6 3.7981 -4.4269 3.6971 27 6 3.4397 -3.9695 4.9576 28 6 2.5160 -2.9377 5.0500 29 7 2.0099 -2.4255 3.9424 30 1 -0.3633 -1.0251 0.0709 31 1 -0.3634 0.5741 0.8524 32 1 -0.3633 0.4513 -0.9233 33 1 3.0798 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5243 3.8011 0.8499 36 1 3.0452 6.8150 2.1860 37 1 3.0798 -0.6611 -1.1755 38 1 1.5612 -0.3873 -2.0627 39 1 3.1799 -2.5619 -2.4773 40 1 1.5946 -3.2952 -2.8812 41 1 3.5682 -4.8476 -1.8265 42 1 1.8754 -5.0656 -1.2682 43 1 4.1214 -3.4335 0.0378 44 1 3.0103 -4.6063 0.8091 45 1 4.5141 -5.2283 3.5893 46 1 3.8697 -4.4070 5.8465 47 1 2.2154 -2.5577 6.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570542579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:09 Heat of formation + Delta-G solvation = 46.002000 kcal Electronic energy + Delta-G solvation = -31814.043075 eV Core-core repulsion = 27613.650748 eV Total energy + Delta-G solvation = -4200.392327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.20372 -39.78852 -38.12152 -37.01669 -35.79904 -33.92093 -33.59687 -32.40415 -31.15670 -31.02214 -30.19790 -27.51632 -25.96590 -25.62809 -24.57343 -24.40808 -22.97862 -21.34388 -21.28979 -19.34818 -18.87006 -17.77972 -17.60881 -17.23427 -16.55957 -16.24887 -15.82492 -15.35781 -15.13578 -14.80402 -14.55906 -14.41150 -14.17025 -13.85797 -13.70589 -13.65292 -13.40375 -13.29223 -13.14049 -12.53227 -12.32629 -12.17439 -11.79954 -11.57875 -11.44272 -11.27106 -11.13075 -11.06233 -10.96461 -10.94651 -10.77906 -10.62570 -10.49598 -10.27316 -10.04427 -9.75482 -9.26586 -9.21728 -9.14944 -8.42826 -7.97057 -7.73430 -7.30284 -6.24105 -3.63156 0.50823 0.99673 2.87796 3.07633 3.28506 3.35189 3.42426 3.90052 4.03157 4.14373 4.17799 4.26819 4.40362 4.42741 4.54006 4.73211 4.81913 4.84590 4.92565 5.12984 5.19481 5.31497 5.34050 5.42567 5.45852 5.57947 5.62722 5.63115 5.70103 5.78127 5.96460 5.96807 6.01661 6.07718 6.16842 6.20769 6.27496 6.33495 6.54816 6.63504 6.84291 7.04331 7.63081 7.71898 7.74391 7.81763 7.98505 8.27269 8.73577 8.84962 9.39163 9.77359 10.32955 10.94647 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003556 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.492061 B = 7871.460838 C = 9837.891288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.490 5.490 3 C 0.043 3.957 4 C 0.447 3.553 5 O -0.549 6.549 6 N -0.576 5.576 7 C -0.289 4.289 8 H 0.101 0.899 9 C 0.017 3.983 10 N -0.909 5.909 11 Si 0.927 3.073 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.041 3.959 16 C 0.149 3.851 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.136 4.136 20 C 0.106 3.894 21 N -0.601 5.601 22 C 0.573 3.427 23 O -0.404 6.404 24 C 0.300 3.700 25 N -0.498 5.498 26 C 0.136 3.864 27 C -0.221 4.221 28 C 0.148 3.852 29 N -0.457 5.457 30 H 0.060 0.940 31 H 0.092 0.908 32 H -0.008 1.008 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.389 0.611 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.170 0.830 46 H 0.149 0.851 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -24.364 -5.204 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.214 5.214 3 C -0.088 4.088 4 C 0.232 3.768 5 O -0.430 6.430 6 N -0.215 5.215 7 C -0.418 4.418 8 H 0.119 0.881 9 C -0.183 4.183 10 N -0.552 5.552 11 Si 0.754 3.246 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.195 1.195 15 C -0.089 4.089 16 C 0.045 3.955 17 H 0.092 0.908 18 C -0.165 4.165 19 C -0.175 4.175 20 C -0.018 4.018 21 N -0.339 5.339 22 C 0.354 3.646 23 O -0.266 6.266 24 C 0.030 3.970 25 N -0.216 5.216 26 C -0.030 4.030 27 C -0.243 4.243 28 C -0.019 4.019 29 N -0.172 5.172 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.010 0.990 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.222 0.778 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.187 0.813 46 H 0.167 0.833 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.001 -23.786 -4.839 24.458 hybrid contribution 0.689 0.844 0.491 1.195 sum 3.689 -22.941 -4.348 23.640 Atomic orbital electron populations 1.22328 0.86329 1.01616 0.99324 1.61962 1.09184 1.11374 1.38905 1.21881 1.00001 0.89927 0.97003 1.19812 0.85206 0.82767 0.89057 1.90581 1.42140 1.63971 1.46350 1.41874 1.50580 1.10985 1.18072 1.19679 1.32153 0.95262 0.94742 0.88104 1.25192 0.97345 0.96693 0.99039 1.69622 1.39038 1.12104 1.34387 0.85907 0.78998 0.78007 0.81661 1.20650 1.21122 1.19513 1.22663 1.00251 0.93310 0.92662 1.21569 0.98390 0.92893 0.82633 0.90848 1.22666 1.01100 0.95946 0.96820 1.22838 1.01685 0.96972 0.95962 1.22520 0.92362 0.90515 0.96361 1.47911 1.44695 1.37329 1.04005 1.16784 0.84247 0.83253 0.80298 1.91116 1.29306 1.22633 1.83499 1.23297 0.90688 0.89514 0.93470 1.68649 1.09400 1.09831 1.33673 1.23294 0.95202 0.96543 0.87981 1.23114 1.00630 1.00066 1.00502 1.23442 0.90332 0.90454 0.97684 1.68378 1.24486 1.26108 0.98205 0.92151 0.88911 0.98995 0.90396 0.94243 0.77849 0.92221 0.91107 0.94699 0.90415 0.90274 0.90241 0.90979 0.92221 0.88269 0.81271 0.83331 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 7.00 60.06 0.42 1.42 16 2 N -0.49 -9.29 1.86 -244.38 -0.45 -9.74 16 3 C 0.04 0.89 5.45 -4.98 -0.03 0.86 16 4 C 0.45 11.58 7.48 -10.98 -0.08 11.50 16 5 O -0.55 -16.10 13.17 0.71 0.01 -16.09 16 6 N -0.58 -15.78 5.29 -10.96 -0.06 -15.84 16 7 C -0.29 -8.57 9.68 -14.93 -0.14 -8.71 16 8 H 0.10 3.15 7.16 -52.49 -0.38 2.78 16 9 C 0.02 0.50 5.50 -17.47 -0.10 0.40 16 10 N -0.91 -26.14 13.05 55.50 0.72 -25.42 16 11 Si 0.93 22.30 29.55 -169.99 -5.02 17.27 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.04 0.58 4.54 -3.83 -0.02 0.56 16 16 C 0.15 1.84 2.89 -66.96 -0.19 1.64 16 17 H 0.07 0.96 6.81 -51.93 -0.35 0.60 16 18 C -0.13 -1.05 6.47 -24.90 -0.16 -1.21 16 19 C -0.14 -1.03 7.08 -24.59 -0.17 -1.21 16 20 C 0.11 1.10 5.92 -2.53 -0.02 1.08 16 21 N -0.60 -8.38 3.07 -163.88 -0.50 -8.88 16 22 C 0.57 10.22 7.46 -12.01 -0.09 10.13 16 23 O -0.40 -8.71 10.19 0.55 0.01 -8.71 16 24 C 0.30 4.91 7.57 -157.07 -1.19 3.72 16 25 N -0.50 -6.24 6.61 -11.12 -0.07 -6.31 16 26 C 0.14 1.23 11.30 -17.22 -0.19 1.03 16 27 C -0.22 -1.90 10.18 -39.17 -0.40 -2.30 16 28 C 0.15 1.78 11.30 -17.22 -0.19 1.59 16 29 N -0.46 -7.89 10.13 -11.12 -0.11 -8.00 16 30 H 0.06 1.11 5.47 -51.93 -0.28 0.83 16 31 H 0.09 2.20 5.82 -51.93 -0.30 1.90 16 32 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 34 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.39 10.25 7.90 -40.82 -0.32 9.93 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 37 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 38 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.08 0.61 7.80 -51.93 -0.40 0.20 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.03 5.88 -51.93 -0.31 0.72 16 45 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 46 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 47 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -37.63 376.11 -8.90 -46.54 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.53 Total: 9.02 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: -2.56 Total: 20.50 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -0.48 Total: -74.20 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.01 Total: -24.79 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.63 -8.90 -46.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570542579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.539 kcal (2) G-P(sol) polarization free energy of solvation -37.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds