Wall clock time and date at job start Wed Apr 1 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99990 * 2 1 4 4 C 1.50701 * 109.47333 * 66.04581 * 3 2 1 5 5 O 1.21290 * 119.99701 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.37100 * 119.99697 * 179.97438 * 6 4 3 8 8 H 1.07996 * 119.99951 * 0.02562 * 7 6 4 9 9 C 1.38948 * 119.99628 * 180.02562 * 7 6 4 10 10 N 1.31410 * 120.00134 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00026 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46938 * 89.99766 * 11 9 7 13 13 H 1.48498 * 109.47040 * 210.00364 * 11 9 7 14 14 H 1.48500 * 109.46805 * 330.00117 * 11 9 7 15 15 C 1.46896 * 111.00148 * 236.04080 * 2 1 3 16 16 C 1.52993 * 109.47384 * 293.95706 * 15 2 1 17 17 H 1.09003 * 109.99491 * 64.64007 * 16 15 2 18 18 C 1.54320 * 109.77285 * 185.79308 * 16 15 2 19 19 C 1.55157 * 102.85739 * 141.88930 * 18 16 15 20 20 C 1.54904 * 101.58434 * 324.30162 * 19 18 16 21 21 N 1.47017 * 109.88560 * 303.54387 * 16 15 2 22 22 C 1.34782 * 125.64736 * 61.67654 * 21 16 15 23 23 O 1.21472 * 119.99695 * 359.71617 * 22 21 16 24 24 C 1.48534 * 120.00021 * 179.71791 * 22 21 16 25 25 N 1.32462 * 119.18585 * 0.27840 * 24 22 21 26 26 C 1.32108 * 120.76564 * 180.29166 * 25 24 22 27 27 C 1.38806 * 119.16421 * 359.43625 * 26 25 24 28 28 C 1.38795 * 118.50662 * 0.27938 * 27 26 25 29 29 N 1.32115 * 119.16792 * 359.97438 * 28 27 26 30 30 H 1.08991 * 109.47249 * 183.95521 * 1 2 3 31 31 H 1.09003 * 109.47268 * 303.96036 * 1 2 3 32 32 H 1.08997 * 109.46745 * 63.95256 * 1 2 3 33 33 H 1.09003 * 109.47165 * 186.04168 * 3 2 1 34 34 H 1.08998 * 109.47356 * 306.04244 * 3 2 1 35 35 H 0.96998 * 120.00080 * 0.02562 * 6 4 3 36 36 H 0.97004 * 120.00135 * 180.02562 * 10 9 7 37 37 H 1.09005 * 109.47243 * 173.95205 * 15 2 1 38 38 H 1.09004 * 109.46793 * 53.95865 * 15 2 1 39 39 H 1.08997 * 110.92473 * 23.47468 * 18 16 15 40 40 H 1.09004 * 110.74120 * 260.21425 * 18 16 15 41 41 H 1.09004 * 110.99674 * 206.22885 * 19 18 16 42 42 H 1.09001 * 111.00772 * 82.38128 * 19 18 16 43 43 H 1.09002 * 110.37069 * 278.17491 * 20 19 18 44 44 H 1.08999 * 110.36751 * 155.85391 * 20 19 18 45 45 H 1.08002 * 120.41999 * 179.71785 * 26 25 24 46 46 H 1.08000 * 120.74332 * 180.25646 * 27 26 25 47 47 H 1.08002 * 120.42172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0189 3.3199 1.5237 7 6 1.6923 3.9348 2.7047 8 1 1.1293 3.3991 3.4547 9 6 2.0856 5.2471 2.9367 10 7 2.7702 5.8989 2.0239 11 14 1.6412 6.0847 4.5462 12 1 2.7179 5.8481 5.5411 13 1 1.4890 7.5443 4.3191 14 1 0.3634 5.5275 5.0579 15 6 1.9955 -0.7661 -1.1375 16 6 1.6315 -2.2426 -0.9702 17 1 0.5494 -2.3670 -1.0136 18 6 2.3031 -3.0751 -2.0826 19 6 2.7149 -4.3741 -1.3407 20 6 3.1044 -3.8254 0.0545 21 7 2.1409 -2.7407 0.3158 22 6 1.7821 -2.2849 1.5324 23 8 0.9748 -1.3824 1.6290 24 6 2.3737 -2.8862 2.7550 25 7 3.2567 -3.8658 2.6306 26 6 3.7981 -4.4269 3.6971 27 6 3.4397 -3.9695 4.9576 28 6 2.5160 -2.9377 5.0500 29 7 2.0099 -2.4255 3.9424 30 1 -0.3633 -1.0251 0.0709 31 1 -0.3634 0.5741 0.8524 32 1 -0.3633 0.4513 -0.9233 33 1 3.0798 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5243 3.8011 0.8499 36 1 3.0452 6.8150 2.1860 37 1 3.0798 -0.6611 -1.1755 38 1 1.5612 -0.3873 -2.0627 39 1 3.1799 -2.5619 -2.4773 40 1 1.5946 -3.2952 -2.8812 41 1 3.5682 -4.8476 -1.8265 42 1 1.8754 -5.0656 -1.2682 43 1 4.1214 -3.4335 0.0378 44 1 3.0103 -4.6063 0.8091 45 1 4.5141 -5.2283 3.5893 46 1 3.8697 -4.4070 5.8465 47 1 2.2154 -2.5577 6.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570542579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:05 Heat of formation + Delta-G solvation = 18.725423 kcal Electronic energy + Delta-G solvation = -31815.225876 eV Core-core repulsion = 27613.650748 eV Total energy + Delta-G solvation = -4201.575128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.16035 -40.89333 -40.02298 -38.16923 -37.32012 -35.76955 -34.85648 -33.36769 -33.20797 -32.04093 -31.30265 -29.19363 -27.34627 -26.65283 -26.25764 -25.42306 -24.11696 -22.65492 -22.05448 -20.86282 -20.36972 -19.81280 -18.76363 -18.19550 -17.85962 -17.36025 -17.11361 -16.59911 -16.44705 -16.31188 -16.07912 -15.97182 -15.53795 -15.28080 -15.03844 -14.79925 -14.59370 -14.49868 -14.10561 -14.00825 -13.55236 -13.42296 -13.30601 -13.25233 -12.99839 -12.58327 -12.50209 -12.40888 -12.33658 -12.24546 -12.12203 -11.96895 -11.87317 -11.57505 -11.42425 -11.38328 -10.61531 -10.42721 -10.15323 -10.13275 -9.94028 -9.46228 -8.69299 -8.43954 -5.91663 -0.42846 0.16207 1.36093 1.37273 1.51595 1.84637 2.01382 2.13809 2.29361 2.88307 2.98366 3.02309 3.22079 3.36206 3.50850 3.71509 3.78571 3.87559 3.96181 4.05186 4.16249 4.26921 4.34155 4.35237 4.41601 4.44224 4.53190 4.54696 4.69481 4.71676 4.74935 4.81102 4.89625 5.05054 5.15981 5.19745 5.22836 5.36032 5.39742 5.42723 5.46746 5.72359 5.96482 5.99874 6.21411 6.43971 6.66848 6.67999 7.00757 7.18514 7.55688 7.62315 8.22824 8.74261 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003556 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.492061 B = 7871.460838 C = 9837.891288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.506 5.506 3 C 0.057 3.943 4 C 0.439 3.561 5 O -0.588 6.588 6 N -0.584 5.584 7 C -0.326 4.326 8 H 0.072 0.928 9 C -0.016 4.016 10 N -0.925 5.925 11 Si 0.992 3.008 12 H -0.271 1.271 13 H -0.267 1.267 14 H -0.276 1.276 15 C 0.041 3.959 16 C 0.142 3.858 17 H 0.062 0.938 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.102 3.898 21 N -0.598 5.598 22 C 0.560 3.440 23 O -0.462 6.462 24 C 0.267 3.733 25 N -0.494 5.494 26 C 0.133 3.867 27 C -0.190 4.190 28 C 0.120 3.880 29 N -0.520 5.520 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.008 0.992 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.392 0.608 36 H 0.276 0.724 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.221 0.779 46 H 0.198 0.802 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -26.596 -6.109 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.231 5.231 3 C -0.075 4.075 4 C 0.226 3.774 5 O -0.471 6.471 6 N -0.223 5.223 7 C -0.456 4.456 8 H 0.090 0.910 9 C -0.215 4.215 10 N -0.567 5.567 11 Si 0.815 3.185 12 H -0.196 1.196 13 H -0.192 1.192 14 H -0.201 1.201 15 C -0.087 4.087 16 C 0.038 3.962 17 H 0.080 0.920 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.020 4.020 21 N -0.335 5.335 22 C 0.342 3.658 23 O -0.329 6.329 24 C -0.003 4.003 25 N -0.212 5.212 26 C -0.032 4.032 27 C -0.211 4.211 28 C -0.045 4.045 29 N -0.236 5.236 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.226 0.774 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.238 0.762 46 H 0.215 0.785 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.397 -26.058 -5.792 27.234 hybrid contribution 0.035 1.398 0.846 1.634 sum 5.432 -24.660 -4.945 25.731 Atomic orbital electron populations 1.21966 0.87070 1.00925 0.97574 1.61865 1.08723 1.10506 1.41983 1.21719 1.01032 0.90824 0.93915 1.20850 0.83766 0.82170 0.90588 1.90573 1.43487 1.64724 1.48301 1.41937 1.51066 1.11661 1.17673 1.19591 1.33990 0.96377 0.95630 0.91009 1.26000 0.96551 0.96481 1.02442 1.69684 1.38729 1.12602 1.35710 0.84953 0.78535 0.77482 0.77480 1.19627 1.19181 1.20071 1.22787 1.00446 0.93854 0.91623 1.21780 0.98371 0.92460 0.83550 0.92012 1.22671 1.01656 0.95349 0.95669 1.22827 1.02918 0.96608 0.93783 1.22698 0.91484 0.89503 0.98325 1.48061 1.44456 1.37519 1.03456 1.17311 0.83805 0.82869 0.81806 1.91076 1.31920 1.25280 1.84646 1.23004 0.92912 0.91582 0.92758 1.68658 1.08567 1.08778 1.35151 1.24243 0.94933 0.96779 0.87295 1.23599 0.97796 0.97445 1.02284 1.23922 0.91608 0.91928 0.97054 1.68237 1.26920 1.28512 0.99888 0.91835 0.94057 0.97432 0.88740 0.92433 0.77441 0.91457 0.90473 0.92694 0.89230 0.88115 0.87378 0.90542 0.92275 0.88305 0.76228 0.78474 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.97 7.00 127.69 0.89 3.86 16 2 N -0.51 -19.81 1.86 -927.07 -1.72 -21.53 16 3 C 0.06 2.36 5.45 85.56 0.47 2.83 16 4 C 0.44 24.08 7.48 87.66 0.66 24.74 16 5 O -0.59 -37.15 13.17 1.57 0.02 -37.13 16 6 N -0.58 -33.48 5.29 -306.99 -1.62 -35.10 16 7 C -0.33 -20.28 9.68 84.04 0.81 -19.47 16 8 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 9 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 10 N -0.93 -53.42 13.05 21.66 0.28 -53.13 16 11 Si 0.99 46.27 29.55 68.60 2.03 48.30 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 C 0.04 1.14 4.54 86.30 0.39 1.53 16 16 C 0.14 3.37 2.89 45.34 0.13 3.50 16 17 H 0.06 1.61 6.81 -2.39 -0.02 1.59 16 18 C -0.12 -1.54 6.47 31.78 0.21 -1.33 16 19 C -0.12 -1.45 7.08 31.98 0.23 -1.22 16 20 C 0.10 1.95 5.92 86.85 0.51 2.46 16 21 N -0.60 -16.75 3.07 -790.69 -2.42 -19.18 16 22 C 0.56 21.19 7.46 86.99 0.65 21.84 16 23 O -0.46 -21.68 10.19 1.00 0.01 -21.67 16 24 C 0.27 9.17 7.57 137.68 1.04 10.21 16 25 N -0.49 -11.98 6.61 -189.09 -1.25 -13.23 16 26 C 0.13 2.01 11.30 84.79 0.96 2.97 16 27 C -0.19 -2.76 10.18 22.54 0.23 -2.53 16 28 C 0.12 2.93 11.30 84.78 0.96 3.88 16 29 N -0.52 -19.19 10.13 -189.09 -1.92 -21.11 16 30 H 0.06 2.52 5.47 -2.39 -0.01 2.50 16 31 H 0.04 2.12 5.82 -2.39 -0.01 2.11 16 32 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 3.60 7.93 -2.39 -0.02 3.58 16 34 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 35 H 0.39 21.39 7.90 -92.71 -0.73 20.66 16 36 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.08 2.03 7.85 -2.38 -0.02 2.01 16 38 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 39 H 0.09 1.04 7.80 -2.39 -0.02 1.02 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.10 1.90 5.88 -2.39 -0.01 1.89 16 45 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 46 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 47 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -91.07 376.11 2.29 -88.78 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.28 Total: 32.18 kcal Atomic # 6 Polarization: 44.21 SS G_CDS: 8.60 Total: 52.81 kcal Atomic # 7 Polarization: -154.63 SS G_CDS: -8.65 Total: -163.28 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: 0.03 Total: -58.80 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -91.07 2.29 -88.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570542579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.505 kcal (2) G-P(sol) polarization free energy of solvation -91.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds