Wall clock time and date at job start Wed Apr 1 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99879 * 2 1 4 4 C 1.50698 * 109.46987 * 293.94909 * 3 2 1 5 5 O 1.21293 * 120.00006 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 3 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47234 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47403 * 120.00325 * 11 9 7 14 14 H 1.48503 * 109.47163 * 240.00122 * 11 9 7 15 15 C 1.46896 * 110.99577 * 123.95424 * 2 1 3 16 16 C 1.52998 * 109.47290 * 66.04545 * 15 2 1 17 17 H 1.08997 * 109.87961 * 296.01427 * 16 15 2 18 18 C 1.54328 * 109.88169 * 174.99515 * 16 15 2 19 19 C 1.55160 * 102.94563 * 218.38887 * 18 16 15 20 20 C 1.54912 * 101.57916 * 35.50330 * 19 18 16 21 21 N 1.47021 * 109.88313 * 57.19444 * 16 15 2 22 22 C 1.34779 * 125.64546 * 298.33387 * 21 16 15 23 23 O 1.21474 * 120.00005 * 0.02562 * 22 21 16 24 24 C 1.48538 * 119.99999 * 180.02562 * 22 21 16 25 25 N 1.32455 * 119.18658 * 359.72645 * 24 22 21 26 26 C 1.32109 * 120.76825 * 179.76142 * 25 24 22 27 27 C 1.38804 * 119.16249 * 0.50709 * 26 25 24 28 28 C 1.38801 * 118.50981 * 359.74928 * 27 26 25 29 29 N 1.32115 * 119.15824 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46920 * 60.00315 * 1 2 3 31 31 H 1.09001 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47175 * 300.00357 * 1 2 3 33 33 H 1.09003 * 109.46477 * 173.95398 * 3 2 1 34 34 H 1.08993 * 109.47002 * 53.95725 * 3 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 36 36 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.46945 * 186.04728 * 15 2 1 38 38 H 1.09001 * 109.47294 * 306.04655 * 15 2 1 39 39 H 1.09000 * 110.72383 * 336.75846 * 18 16 15 40 40 H 1.09006 * 110.71828 * 99.85346 * 18 16 15 41 41 H 1.08995 * 111.00353 * 153.58057 * 19 18 16 42 42 H 1.09000 * 111.00388 * 277.43434 * 19 18 16 43 43 H 1.09003 * 110.36318 * 81.82363 * 20 19 18 44 44 H 1.08995 * 110.36648 * 204.04387 * 20 19 18 45 45 H 1.07991 * 120.42222 * 180.26134 * 26 25 24 46 46 H 1.07997 * 120.74916 * 179.77172 * 27 26 25 47 47 H 1.07993 * 120.42131 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 8 1.0048 1.4454 -2.1408 6 7 2.0181 3.3201 -1.5233 7 6 1.6969 3.9330 -2.7069 8 1 1.1346 3.3970 -3.4573 9 6 2.0947 5.2436 -2.9411 10 7 2.7793 5.8955 -2.0282 11 14 1.6564 6.0787 -4.5534 12 1 0.8872 5.1369 -5.4057 13 1 0.8323 7.2832 -4.2790 14 1 2.9009 6.4804 -5.2571 15 6 1.9954 -0.7660 1.1376 16 6 1.6313 -2.2426 0.9703 17 1 0.5485 -2.3633 1.0023 18 6 2.2855 -3.0749 2.0933 19 6 2.7114 -4.3742 1.3599 20 6 3.1189 -3.8269 -0.0309 21 7 2.1561 -2.7453 -0.3077 22 6 1.8134 -2.2927 -1.5300 23 8 1.0053 -1.3923 -1.6398 24 6 2.4238 -2.8948 -2.7430 25 7 3.3072 -3.8719 -2.6045 26 6 3.8658 -4.4329 -3.6621 27 6 3.5241 -3.9787 -4.9284 28 6 2.5988 -2.9497 -5.0358 29 7 2.0756 -2.4371 -3.9363 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0797 1.3443 0.1082 34 1 1.5611 1.9273 0.8309 35 1 2.5234 3.8014 -0.8495 36 1 3.0567 6.8105 -2.1915 37 1 3.0796 -0.6611 1.1757 38 1 1.5610 -0.3873 2.0628 39 1 3.1553 -2.5584 2.4994 40 1 1.5650 -3.2924 2.8818 41 1 3.5590 -4.8443 1.8585 42 1 1.8749 -5.0681 1.2769 43 1 4.1344 -3.4321 -0.0005 44 1 3.0394 -4.6100 -0.7848 45 1 4.5822 -5.2321 -3.5428 46 1 3.9678 -4.4164 -5.8103 47 1 2.3103 -2.5728 -6.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570542580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:15 Heat of formation + Delta-G solvation = 44.680699 kcal Electronic energy + Delta-G solvation = -31799.850289 eV Core-core repulsion = 27599.400666 eV Total energy + Delta-G solvation = -4200.449623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.20651 -39.78366 -38.12196 -37.01684 -35.80271 -33.92427 -33.59709 -32.40722 -31.15788 -31.02254 -30.19997 -27.51521 -25.97492 -25.62909 -24.57681 -24.41180 -22.98029 -21.34859 -21.29246 -19.34447 -18.87429 -17.78297 -17.60972 -17.23859 -16.56060 -16.24423 -15.82604 -15.35487 -15.12914 -14.81513 -14.55831 -14.42134 -14.17331 -13.85370 -13.70533 -13.65086 -13.40080 -13.28714 -13.13351 -12.54840 -12.33431 -12.18178 -11.79806 -11.58232 -11.44395 -11.27603 -11.12610 -11.07091 -10.97593 -10.95540 -10.77569 -10.63657 -10.49726 -10.22265 -10.04928 -9.75816 -9.27723 -9.23027 -9.18229 -8.43059 -7.97463 -7.73573 -7.30205 -6.24241 -3.63236 0.50500 0.99322 2.87521 3.07410 3.26878 3.35637 3.44264 3.89732 4.02861 4.13938 4.17653 4.26548 4.40156 4.42454 4.54079 4.72989 4.81725 4.84268 4.92282 5.12617 5.19209 5.31345 5.33571 5.42471 5.45862 5.57686 5.62289 5.62964 5.69755 5.77945 5.95953 5.96551 6.01970 6.07511 6.16812 6.20530 6.27833 6.29816 6.54370 6.63298 6.83986 7.04677 7.62504 7.72037 7.74077 7.81361 7.98184 8.27452 8.72914 8.84852 9.39213 9.77315 10.32849 10.94598 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.003550 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.624026 B = 7884.977590 C = 9852.583002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.490 5.490 3 C 0.044 3.956 4 C 0.447 3.553 5 O -0.550 6.550 6 N -0.577 5.577 7 C -0.288 4.288 8 H 0.102 0.898 9 C 0.017 3.983 10 N -0.909 5.909 11 Si 0.926 3.074 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.040 3.960 16 C 0.149 3.851 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.136 4.136 20 C 0.106 3.894 21 N -0.601 5.601 22 C 0.573 3.427 23 O -0.404 6.404 24 C 0.300 3.700 25 N -0.498 5.498 26 C 0.136 3.864 27 C -0.221 4.221 28 C 0.148 3.852 29 N -0.458 5.458 30 H 0.094 0.906 31 H 0.057 0.943 32 H -0.007 1.007 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.389 0.611 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.170 0.830 46 H 0.149 0.851 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -24.400 5.288 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.214 5.214 3 C -0.088 4.088 4 C 0.232 3.768 5 O -0.430 6.430 6 N -0.215 5.215 7 C -0.418 4.418 8 H 0.120 0.880 9 C -0.183 4.183 10 N -0.551 5.551 11 Si 0.753 3.247 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.089 4.089 16 C 0.045 3.955 17 H 0.092 0.908 18 C -0.165 4.165 19 C -0.174 4.174 20 C -0.018 4.018 21 N -0.339 5.339 22 C 0.354 3.646 23 O -0.265 6.265 24 C 0.030 3.970 25 N -0.216 5.216 26 C -0.030 4.030 27 C -0.243 4.243 28 C -0.019 4.019 29 N -0.172 5.172 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.011 0.989 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.221 0.779 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.187 0.813 46 H 0.167 0.833 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.083 -23.831 4.904 24.525 hybrid contribution 0.703 0.858 -0.466 1.203 sum 3.786 -22.973 4.438 23.702 Atomic orbital electron populations 1.22319 0.86361 1.00783 1.00153 1.61957 1.09144 1.11409 1.38899 1.21887 1.00011 0.89877 0.97012 1.19810 0.85220 0.82732 0.89044 1.90578 1.42138 1.63959 1.46371 1.41883 1.50700 1.10989 1.17975 1.19733 1.32073 0.95411 0.94536 0.88044 1.25196 0.97334 0.96718 0.99068 1.69631 1.39026 1.12096 1.34391 0.85850 0.78041 0.79014 0.81746 1.19302 1.20962 1.20987 1.22657 1.00262 0.93316 0.92680 1.21577 0.98342 0.92846 0.82761 0.90826 1.22667 1.01151 0.95948 0.96768 1.22832 1.01618 0.96961 0.96012 1.22517 0.92320 0.90609 0.96317 1.47911 1.44590 1.37418 1.04021 1.16785 0.84296 0.83239 0.80284 1.91114 1.29366 1.22708 1.83358 1.23290 0.90786 0.89551 0.93337 1.68645 1.09095 1.09811 1.34001 1.23292 0.95177 0.96510 0.88031 1.23116 1.00688 1.00079 1.00426 1.23442 0.90214 0.90430 0.97813 1.68373 1.24506 1.26051 0.98276 0.88732 0.92476 0.98861 0.90386 0.94232 0.77852 0.92277 0.91104 0.94701 0.90447 0.90260 0.90234 0.90976 0.92241 0.88253 0.81266 0.83327 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 7.00 60.07 0.42 1.41 16 2 N -0.49 -9.28 1.84 -244.37 -0.45 -9.73 16 3 C 0.04 0.89 5.45 -4.98 -0.03 0.86 16 4 C 0.45 11.59 7.51 -10.99 -0.08 11.51 16 5 O -0.55 -16.10 13.17 1.49 0.02 -16.08 16 6 N -0.58 -15.79 5.29 -10.96 -0.06 -15.85 16 7 C -0.29 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.18 7.16 -52.49 -0.38 2.80 16 9 C 0.02 0.48 5.50 -17.47 -0.10 0.38 16 10 N -0.91 -26.14 13.05 55.50 0.72 -25.42 16 11 Si 0.93 22.28 29.55 -169.99 -5.02 17.26 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.04 0.58 4.53 -3.83 -0.02 0.56 16 16 C 0.15 1.83 2.90 -66.95 -0.19 1.64 16 17 H 0.07 0.96 6.69 -51.93 -0.35 0.61 16 18 C -0.13 -1.05 6.48 -24.89 -0.16 -1.21 16 19 C -0.14 -1.03 7.09 -24.58 -0.17 -1.20 16 20 C 0.11 1.09 5.92 -2.53 -0.01 1.08 16 21 N -0.60 -8.37 3.06 -163.86 -0.50 -8.87 16 22 C 0.57 10.22 7.47 -12.01 -0.09 10.13 16 23 O -0.40 -8.73 10.40 1.33 0.01 -8.71 16 24 C 0.30 4.91 7.57 -157.08 -1.19 3.72 16 25 N -0.50 -6.22 6.61 -11.12 -0.07 -6.30 16 26 C 0.14 1.22 11.30 -17.22 -0.19 1.03 16 27 C -0.22 -1.89 10.18 -39.16 -0.40 -2.29 16 28 C 0.15 1.78 11.30 -17.22 -0.19 1.58 16 29 N -0.46 -7.89 10.13 -11.12 -0.11 -8.00 16 30 H 0.09 2.24 5.83 -51.93 -0.30 1.94 16 31 H 0.06 1.03 5.53 -51.93 -0.29 0.75 16 32 H -0.01 -0.12 8.14 -51.93 -0.42 -0.55 16 33 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 34 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.39 10.25 7.90 -40.82 -0.32 9.92 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.07 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.08 0.60 7.80 -51.93 -0.41 0.20 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.03 5.88 -51.93 -0.31 0.72 16 45 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -37.68 376.30 -8.88 -46.56 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.53 Total: 8.96 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: -2.56 Total: 20.50 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -0.47 Total: -74.17 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.03 Total: -24.79 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.68 -8.88 -46.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570542580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.240 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds