Wall clock time and date at job start Wed Apr 1 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99879 * 2 1 4 4 C 1.50698 * 109.46987 * 293.94909 * 3 2 1 5 5 O 1.21293 * 120.00006 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 3 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47234 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47403 * 120.00325 * 11 9 7 14 14 H 1.48503 * 109.47163 * 240.00122 * 11 9 7 15 15 C 1.46896 * 110.99577 * 123.95424 * 2 1 3 16 16 C 1.52998 * 109.47290 * 66.04545 * 15 2 1 17 17 H 1.08997 * 109.87961 * 296.01427 * 16 15 2 18 18 C 1.54328 * 109.88169 * 174.99515 * 16 15 2 19 19 C 1.55160 * 102.94563 * 218.38887 * 18 16 15 20 20 C 1.54912 * 101.57916 * 35.50330 * 19 18 16 21 21 N 1.47021 * 109.88313 * 57.19444 * 16 15 2 22 22 C 1.34779 * 125.64546 * 298.33387 * 21 16 15 23 23 O 1.21474 * 120.00005 * 0.02562 * 22 21 16 24 24 C 1.48538 * 119.99999 * 180.02562 * 22 21 16 25 25 N 1.32455 * 119.18658 * 359.72645 * 24 22 21 26 26 C 1.32109 * 120.76825 * 179.76142 * 25 24 22 27 27 C 1.38804 * 119.16249 * 0.50709 * 26 25 24 28 28 C 1.38801 * 118.50981 * 359.74928 * 27 26 25 29 29 N 1.32115 * 119.15824 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46920 * 60.00315 * 1 2 3 31 31 H 1.09001 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47175 * 300.00357 * 1 2 3 33 33 H 1.09003 * 109.46477 * 173.95398 * 3 2 1 34 34 H 1.08993 * 109.47002 * 53.95725 * 3 2 1 35 35 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 36 36 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.46945 * 186.04728 * 15 2 1 38 38 H 1.09001 * 109.47294 * 306.04655 * 15 2 1 39 39 H 1.09000 * 110.72383 * 336.75846 * 18 16 15 40 40 H 1.09006 * 110.71828 * 99.85346 * 18 16 15 41 41 H 1.08995 * 111.00353 * 153.58057 * 19 18 16 42 42 H 1.09000 * 111.00388 * 277.43434 * 19 18 16 43 43 H 1.09003 * 110.36318 * 81.82363 * 20 19 18 44 44 H 1.08995 * 110.36648 * 204.04387 * 20 19 18 45 45 H 1.07991 * 120.42222 * 180.26134 * 26 25 24 46 46 H 1.07997 * 120.74916 * 179.77172 * 27 26 25 47 47 H 1.07993 * 120.42131 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 8 1.0048 1.4454 -2.1408 6 7 2.0181 3.3201 -1.5233 7 6 1.6969 3.9330 -2.7069 8 1 1.1346 3.3970 -3.4573 9 6 2.0947 5.2436 -2.9411 10 7 2.7793 5.8955 -2.0282 11 14 1.6564 6.0787 -4.5534 12 1 0.8872 5.1369 -5.4057 13 1 0.8323 7.2832 -4.2790 14 1 2.9009 6.4804 -5.2571 15 6 1.9954 -0.7660 1.1376 16 6 1.6313 -2.2426 0.9703 17 1 0.5485 -2.3633 1.0023 18 6 2.2855 -3.0749 2.0933 19 6 2.7114 -4.3742 1.3599 20 6 3.1189 -3.8269 -0.0309 21 7 2.1561 -2.7453 -0.3077 22 6 1.8134 -2.2927 -1.5300 23 8 1.0053 -1.3923 -1.6398 24 6 2.4238 -2.8948 -2.7430 25 7 3.3072 -3.8719 -2.6045 26 6 3.8658 -4.4329 -3.6621 27 6 3.5241 -3.9787 -4.9284 28 6 2.5988 -2.9497 -5.0358 29 7 2.0756 -2.4371 -3.9363 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0797 1.3443 0.1082 34 1 1.5611 1.9273 0.8309 35 1 2.5234 3.8014 -0.8495 36 1 3.0567 6.8105 -2.1915 37 1 3.0796 -0.6611 1.1757 38 1 1.5610 -0.3873 2.0628 39 1 3.1553 -2.5584 2.4994 40 1 1.5650 -3.2924 2.8818 41 1 3.5590 -4.8443 1.8585 42 1 1.8749 -5.0681 1.2769 43 1 4.1344 -3.4321 -0.0005 44 1 3.0394 -4.6100 -0.7848 45 1 4.5822 -5.2321 -3.5428 46 1 3.9678 -4.4164 -5.8103 47 1 2.3103 -2.5728 -6.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570542580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:12 Heat of formation + Delta-G solvation = 17.315284 kcal Electronic energy + Delta-G solvation = -31801.036942 eV Core-core repulsion = 27599.400666 eV Total energy + Delta-G solvation = -4201.636276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.16139 -40.88731 -40.02293 -38.17460 -37.31983 -35.77048 -34.85833 -33.36888 -33.20903 -32.04165 -31.30512 -29.19170 -27.35044 -26.65578 -26.26069 -25.42507 -24.11806 -22.65915 -22.05528 -20.86733 -20.36600 -19.81438 -18.76510 -18.19742 -17.86209 -17.36014 -17.10197 -16.60258 -16.44805 -16.31197 -16.07861 -15.97173 -15.53725 -15.28386 -15.03924 -14.79789 -14.59274 -14.50105 -14.09729 -14.00919 -13.56783 -13.42686 -13.30719 -13.26170 -12.99769 -12.59157 -12.49818 -12.39639 -12.33984 -12.23877 -12.12276 -11.97101 -11.88238 -11.57817 -11.42756 -11.38483 -10.61674 -10.46319 -10.15549 -10.13622 -9.94022 -9.46031 -8.69586 -8.44149 -5.91769 -0.43011 0.16051 1.34630 1.37402 1.53179 1.84434 2.01219 2.13628 2.29372 2.87844 2.98173 3.02096 3.21899 3.35990 3.50456 3.71408 3.78748 3.87174 3.95740 4.05098 4.16123 4.26831 4.33686 4.34757 4.41728 4.44262 4.52477 4.54484 4.70119 4.71467 4.74278 4.80865 4.87973 5.04946 5.15957 5.19535 5.22877 5.36066 5.39763 5.43021 5.46678 5.72342 5.96444 5.99722 6.21108 6.43566 6.66739 6.67756 7.00565 7.18586 7.55102 7.62250 8.22760 8.74294 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.003550 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.624026 B = 7884.977590 C = 9852.583002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.506 5.506 3 C 0.057 3.943 4 C 0.440 3.560 5 O -0.588 6.588 6 N -0.584 5.584 7 C -0.325 4.325 8 H 0.072 0.928 9 C -0.016 4.016 10 N -0.925 5.925 11 Si 0.992 3.008 12 H -0.277 1.277 13 H -0.268 1.268 14 H -0.269 1.269 15 C 0.041 3.959 16 C 0.141 3.859 17 H 0.062 0.938 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.102 3.898 21 N -0.598 5.598 22 C 0.560 3.440 23 O -0.463 6.463 24 C 0.267 3.733 25 N -0.494 5.494 26 C 0.133 3.867 27 C -0.190 4.190 28 C 0.120 3.880 29 N -0.520 5.520 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.007 0.993 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.392 0.608 36 H 0.276 0.724 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.221 0.779 46 H 0.198 0.802 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.621 -26.600 6.246 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.231 5.231 3 C -0.075 4.075 4 C 0.226 3.774 5 O -0.471 6.471 6 N -0.224 5.224 7 C -0.455 4.455 8 H 0.090 0.910 9 C -0.215 4.215 10 N -0.567 5.567 11 Si 0.816 3.184 12 H -0.202 1.202 13 H -0.194 1.194 14 H -0.194 1.194 15 C -0.087 4.087 16 C 0.038 3.962 17 H 0.080 0.920 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.020 4.020 21 N -0.335 5.335 22 C 0.342 3.658 23 O -0.330 6.330 24 C -0.002 4.002 25 N -0.211 5.211 26 C -0.032 4.032 27 C -0.211 4.211 28 C -0.045 4.045 29 N -0.236 5.236 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.226 0.774 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.238 0.762 46 H 0.215 0.785 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.488 -26.069 5.910 27.288 hybrid contribution 0.049 1.404 -0.837 1.636 sum 5.537 -24.665 5.073 25.783 Atomic orbital electron populations 1.21959 0.87087 1.00492 0.98056 1.61853 1.08696 1.10541 1.41988 1.21724 1.01036 0.90777 0.93926 1.20851 0.83781 0.82137 0.90582 1.90571 1.43494 1.64713 1.48327 1.41944 1.51180 1.11671 1.17564 1.19628 1.33935 0.96521 0.95403 0.91024 1.26002 0.96530 0.96495 1.02481 1.69692 1.38703 1.12618 1.35722 0.84892 0.78296 0.77853 0.77389 1.20188 1.19361 1.19376 1.22777 1.00439 0.93856 0.91649 1.21789 0.98272 0.92420 0.83725 0.92007 1.22673 1.01758 0.95360 0.95547 1.22822 1.02815 0.96591 0.93877 1.22696 0.91469 0.89602 0.98250 1.48061 1.44373 1.37604 1.03451 1.17314 0.83851 0.82846 0.81796 1.91075 1.31993 1.25377 1.84515 1.22993 0.93000 0.91624 0.92627 1.68654 1.08285 1.08760 1.35447 1.24242 0.94890 0.96731 0.87370 1.23601 0.97888 0.97448 1.02174 1.23923 0.91466 0.91898 0.97212 1.68232 1.26961 1.28460 0.99945 0.93922 0.91892 0.97468 0.88747 0.92396 0.77438 0.91469 0.90500 0.92667 0.89255 0.88110 0.87361 0.90545 0.92275 0.88282 0.76219 0.78467 0.79438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.94 7.00 127.69 0.89 3.84 16 2 N -0.51 -19.81 1.84 -927.06 -1.71 -21.52 16 3 C 0.06 2.37 5.45 85.56 0.47 2.84 16 4 C 0.44 24.10 7.51 87.66 0.66 24.76 16 5 O -0.59 -37.20 13.17 0.81 0.01 -37.19 16 6 N -0.58 -33.49 5.29 -306.98 -1.62 -35.12 16 7 C -0.33 -20.23 9.68 84.04 0.81 -19.41 16 8 H 0.07 4.81 7.16 -2.91 -0.02 4.78 16 9 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 10 N -0.93 -53.40 13.05 21.66 0.28 -53.12 16 11 Si 0.99 46.30 29.55 68.60 2.03 48.32 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 15 C 0.04 1.14 4.53 86.30 0.39 1.53 16 16 C 0.14 3.36 2.90 45.34 0.13 3.49 16 17 H 0.06 1.61 6.69 -2.39 -0.02 1.60 16 18 C -0.12 -1.54 6.48 31.79 0.21 -1.33 16 19 C -0.12 -1.44 7.09 31.99 0.23 -1.22 16 20 C 0.10 1.94 5.92 86.86 0.51 2.45 16 21 N -0.60 -16.75 3.06 -790.64 -2.42 -19.17 16 22 C 0.56 21.19 7.47 86.99 0.65 21.84 16 23 O -0.46 -21.75 10.40 0.25 0.00 -21.75 16 24 C 0.27 9.16 7.57 137.69 1.04 10.20 16 25 N -0.49 -11.95 6.61 -189.10 -1.25 -13.20 16 26 C 0.13 2.01 11.30 84.79 0.96 2.97 16 27 C -0.19 -2.74 10.18 22.54 0.23 -2.52 16 28 C 0.12 2.92 11.30 84.79 0.96 3.88 16 29 N -0.52 -19.20 10.13 -189.10 -1.92 -21.11 16 30 H 0.04 2.19 5.83 -2.39 -0.01 2.18 16 31 H 0.06 2.45 5.53 -2.39 -0.01 2.43 16 32 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.09 3.60 7.93 -2.39 -0.02 3.58 16 34 H 0.06 2.19 8.12 -2.39 -0.02 2.17 16 35 H 0.39 21.39 7.90 -92.71 -0.73 20.66 16 36 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.08 2.03 7.86 -2.39 -0.02 2.01 16 38 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 39 H 0.09 1.03 7.80 -2.39 -0.02 1.01 16 40 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 1.90 5.88 -2.39 -0.01 1.88 16 45 H 0.22 0.96 8.06 -2.92 -0.02 0.93 16 46 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 47 H 0.19 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -91.27 376.30 2.29 -88.98 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.28 Total: 32.01 kcal Atomic # 6 Polarization: 44.24 SS G_CDS: 8.61 Total: 52.85 kcal Atomic # 7 Polarization: -154.59 SS G_CDS: -8.64 Total: -163.23 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: 0.01 Total: -58.93 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -91.27 2.29 -88.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570542580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.293 kcal (2) G-P(sol) polarization free energy of solvation -91.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds