Wall clock time and date at job start Wed Apr 1 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36928 * 120.00300 * 2 1 4 4 H 1.08001 * 120.00487 * 202.70549 * 3 2 1 5 5 C 1.38817 * 119.99773 * 22.70683 * 3 2 1 6 6 N 1.31620 * 120.00219 * 11.50841 * 5 3 2 7 7 Si 1.86805 * 119.99910 * 191.50510 * 5 3 2 8 8 H 1.48501 * 109.47205 * 90.00245 * 7 5 3 9 9 H 1.48502 * 109.47071 * 210.00219 * 7 5 3 10 10 H 1.48500 * 109.47340 * 330.00075 * 7 5 3 11 11 C 1.46502 * 119.99568 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47030 * 269.99976 * 11 2 1 13 13 O 1.42900 * 109.46899 * 65.00710 * 12 11 2 14 14 C 1.42901 * 113.99793 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47061 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47423 * 64.99439 * 15 14 13 17 17 C 1.34777 * 119.99974 * 179.97438 * 16 15 14 18 18 O 1.21540 * 120.00069 * 0.02562 * 17 16 15 19 19 C 1.47975 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.39732 * 119.42782 * 180.02562 * 19 17 16 21 21 C 1.36992 * 119.60080 * 179.97438 * 20 19 17 22 22 C 1.39896 * 118.35770 * 0.02562 * 21 20 19 23 23 N 1.35433 * 133.81333 * 179.97438 * 22 21 20 24 24 C 1.30210 * 109.58147 * 180.02562 * 23 22 21 25 25 N 1.35996 * 110.17801 * 0.02562 * 24 23 22 26 26 C 1.46503 * 126.29289 * 179.97438 * 25 24 23 27 27 C 1.37945 * 107.41434 * 359.97438 * 25 24 23 28 28 N 1.31880 * 133.82867 * 179.97438 * 27 25 24 29 29 H 1.08999 * 109.47505 * 273.91832 * 1 2 3 30 30 H 1.09004 * 109.46676 * 33.91854 * 1 2 3 31 31 H 1.09001 * 109.46883 * 153.91563 * 1 2 3 32 32 H 0.96997 * 119.99733 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46777 * 149.99982 * 11 2 1 34 34 H 1.09000 * 109.47345 * 30.00292 * 11 2 1 35 35 H 1.08994 * 109.47226 * 305.00026 * 12 11 2 36 36 H 1.09004 * 109.46609 * 185.00084 * 12 11 2 37 37 H 1.08993 * 109.47480 * 59.99092 * 14 13 12 38 38 H 1.09007 * 109.46575 * 299.99241 * 14 13 12 39 39 H 1.09000 * 109.47015 * 304.99469 * 15 14 13 40 40 H 1.09000 * 109.47318 * 184.99790 * 15 14 13 41 41 H 0.97005 * 120.00281 * 0.02562 * 16 15 14 42 42 H 1.08001 * 120.19783 * 0.02562 * 20 19 17 43 43 H 1.07994 * 120.82157 * 180.02562 * 21 20 19 44 44 H 1.08005 * 124.91620 * 179.73695 * 24 23 22 45 45 H 1.09007 * 109.46820 * 90.02135 * 26 25 24 46 46 H 1.08996 * 109.47256 * 210.02235 * 26 25 24 47 47 H 1.08995 * 109.47058 * 330.02391 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1670 1.2221 -0.3610 5 6 1.5364 2.3414 0.4641 6 7 0.3918 2.2653 1.1094 7 14 2.3355 4.0045 0.1727 8 1 1.8562 4.5651 -1.1162 9 1 1.9748 4.9276 1.2786 10 1 3.8109 3.8431 0.1241 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4433 13 8 1.2059 -1.9927 2.0822 14 6 1.3322 -2.4150 3.4415 15 6 -0.0568 -2.6879 4.0219 16 7 -0.6659 -3.8199 3.3194 17 6 -1.8983 -4.2429 3.6641 18 8 -2.5045 -3.6848 4.5576 19 6 -2.5138 -5.3860 2.9541 20 6 -3.7923 -5.8142 3.3209 21 6 -4.3656 -6.8718 2.6656 22 6 -3.6408 -7.4911 1.6418 23 7 -3.8929 -8.5303 0.8107 24 6 -2.8739 -8.7150 0.0214 25 7 -1.8990 -7.8067 0.2936 26 6 -0.6037 -7.6961 -0.3819 27 6 -2.3539 -7.0086 1.3227 28 7 -1.8417 -5.9873 1.9812 29 1 -0.3634 0.0702 1.0252 30 1 -0.3633 0.8528 -0.5735 31 1 -0.3633 -0.9230 -0.4519 32 1 -0.0369 3.0728 1.4334 33 1 3.1499 -1.1387 -0.5134 34 1 1.6084 -2.0287 -0.5130 35 1 2.9642 -0.9124 1.9819 36 1 3.0731 -2.6059 1.4449 37 1 1.8205 -1.6319 4.0214 38 1 1.9298 -3.3256 3.4850 39 1 -0.6825 -1.8040 3.8978 40 1 0.0324 -2.9238 5.0824 41 1 -0.1820 -4.2656 2.6065 42 1 -4.3255 -5.3139 4.1158 43 1 -5.3528 -7.2188 2.9327 44 1 -2.8100 -9.4818 -0.7365 45 1 -0.6943 -7.0213 -1.2332 46 1 0.1373 -7.3045 0.3149 47 1 -0.2904 -8.6803 -0.7302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571343946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:01 Heat of formation + Delta-G solvation = 43.098188 kcal Electronic energy + Delta-G solvation = -30077.621119 eV Core-core repulsion = 25877.102873 eV Total energy + Delta-G solvation = -4200.518246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.70345 -40.01291 -38.19510 -37.51738 -35.43627 -34.93699 -34.40280 -32.24384 -31.46519 -30.59669 -29.24708 -27.77244 -27.54402 -25.69277 -25.14047 -23.51730 -22.98955 -22.23933 -21.20616 -20.84601 -20.31765 -18.36140 -18.11401 -17.34534 -16.84687 -16.52466 -16.16681 -16.07111 -15.24197 -15.19384 -15.03440 -14.89000 -14.55240 -14.13349 -13.89560 -13.72855 -13.54716 -13.36495 -13.27468 -13.11091 -12.94482 -12.77423 -12.31852 -12.12412 -11.53593 -11.38673 -11.35215 -11.17284 -10.89676 -10.83305 -10.76310 -10.49440 -10.29367 -10.04647 -9.89525 -9.78676 -9.52693 -9.08858 -9.04839 -9.00033 -8.78010 -8.46894 -6.65519 -5.63521 -3.10258 0.16198 0.93519 1.90969 2.18998 2.82996 3.09110 3.40857 3.46699 3.48413 3.63086 3.68483 3.86259 4.15981 4.19009 4.43153 4.55336 4.63158 4.72538 4.77236 4.92057 5.10945 5.16442 5.24150 5.32031 5.46972 5.54797 5.58159 5.68498 5.72159 5.77846 5.81860 6.01670 6.11363 6.21167 6.22436 6.24539 6.44891 6.49693 6.55439 6.77705 6.97915 7.27414 7.29819 7.53623 7.62021 7.80498 7.84800 8.00600 8.18819 8.47901 9.32328 9.96026 10.46745 11.40393 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002376 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.494973 B =11782.709239 C =12553.317294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.258 4.258 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.901 5.901 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.153 3.847 12 C 0.043 3.957 13 O -0.366 6.366 14 C 0.051 3.949 15 C 0.122 3.878 16 N -0.697 5.697 17 C 0.572 3.428 18 O -0.532 6.532 19 C 0.124 3.876 20 C -0.125 4.125 21 C -0.027 4.027 22 C 0.021 3.979 23 N -0.492 5.492 24 C 0.281 3.719 25 N -0.483 5.483 26 C 0.079 3.921 27 C 0.235 3.765 28 N -0.449 5.449 29 H 0.032 0.968 30 H 0.037 0.963 31 H -0.008 1.008 32 H 0.251 0.749 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.024 0.976 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.412 0.588 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -24.811 0.716 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.388 4.388 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.546 5.546 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.285 6.285 14 C -0.027 4.027 15 C -0.001 4.001 16 N -0.348 5.348 17 C 0.356 3.644 18 O -0.409 6.409 19 C -0.025 4.025 20 C -0.148 4.148 21 C -0.055 4.055 22 C -0.100 4.100 23 N -0.211 5.211 24 C -0.005 4.005 25 N -0.175 5.175 26 C -0.063 4.063 27 C -0.002 4.002 28 N -0.165 5.165 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.249 0.751 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.240 0.760 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.438 -24.382 1.010 24.644 hybrid contribution 1.015 0.875 -0.208 1.356 sum -2.424 -23.507 0.802 23.645 Atomic orbital electron populations 1.20684 0.82149 0.94740 0.99360 1.43880 1.02127 1.00205 1.85638 1.19197 0.98170 0.85658 1.35726 0.91593 1.25043 0.97792 0.98375 0.98420 1.70098 1.18036 1.26850 1.39631 0.86298 0.78697 0.84440 0.77311 1.21582 1.21802 1.20640 1.20883 0.96328 0.88911 0.91375 1.23507 0.85073 0.96835 0.98239 1.88026 1.30413 1.87328 1.22702 1.22601 0.95463 0.98481 0.86161 1.21497 0.93724 0.89453 0.95455 1.45766 1.16898 1.33525 1.38602 1.17672 0.81628 0.82364 0.82746 1.90807 1.62373 1.56850 1.30837 1.20936 0.92678 0.95740 0.93129 1.21579 0.95064 0.96874 1.01316 1.20457 0.99757 0.93414 0.91852 1.19867 0.94131 0.96742 0.99289 1.70447 1.25695 1.17213 1.07791 1.25525 0.82774 0.93421 0.98785 1.45091 1.17063 1.26770 1.28618 1.22105 0.81633 1.04067 0.98480 1.18826 0.93005 0.94653 0.93746 1.66152 1.36817 1.06905 1.06628 0.94929 0.94450 0.98958 0.93867 0.92440 0.93945 0.93296 0.95801 0.91914 0.93815 0.89714 0.90187 0.75139 0.82397 0.83319 0.76004 0.90075 0.88961 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.59 8.61 59.85 0.52 5.10 16 2 N -0.60 -15.33 2.89 -181.11 -0.52 -15.85 16 3 C -0.26 -7.15 9.67 -15.06 -0.15 -7.30 16 4 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 5 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 6 N -0.90 -26.90 10.62 55.49 0.59 -26.31 16 7 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.15 3.14 6.11 -4.04 -0.02 3.12 16 12 C 0.04 0.79 6.28 37.16 0.23 1.03 16 13 O -0.37 -6.92 9.84 -35.23 -0.35 -7.27 16 14 C 0.05 0.75 6.07 37.16 0.23 0.97 16 15 C 0.12 1.77 6.06 -4.05 -0.02 1.75 16 16 N -0.70 -9.97 5.49 -61.21 -0.34 -10.31 16 17 C 0.57 8.65 7.80 -12.27 -0.10 8.55 16 18 O -0.53 -9.28 16.29 5.33 0.09 -9.19 16 19 C 0.12 1.67 6.74 -82.97 -0.56 1.11 16 20 C -0.12 -1.43 9.55 -39.48 -0.38 -1.81 16 21 C -0.03 -0.29 10.16 -39.41 -0.40 -0.69 16 22 C 0.02 0.25 7.25 -84.58 -0.61 -0.36 16 23 N -0.49 -5.29 11.27 -11.93 -0.13 -5.43 16 24 C 0.28 2.04 12.49 -89.74 -1.12 0.92 16 25 N -0.48 -4.10 3.20 -124.97 -0.40 -4.50 16 26 C 0.08 0.39 11.19 59.85 0.67 1.06 16 27 C 0.23 2.81 8.01 -155.74 -1.25 1.56 16 28 N -0.45 -5.87 9.54 -8.82 -0.08 -5.95 16 29 H 0.03 0.93 7.43 -51.93 -0.39 0.55 16 30 H 0.04 1.04 7.20 -51.93 -0.37 0.67 16 31 H -0.01 -0.19 7.85 -51.93 -0.41 -0.60 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.04 0.81 7.87 -51.93 -0.41 0.41 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.41 5.60 7.78 -40.82 -0.32 5.28 16 42 H 0.16 1.62 7.61 -52.49 -0.40 1.22 16 43 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.22 0.43 8.06 -52.48 -0.42 0.01 16 45 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -36.54 400.46 -10.10 -46.64 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.91 Total: 0.07 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: -3.05 Total: 15.00 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -0.89 Total: -68.36 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.26 Total: -16.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.54 -10.10 -46.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571343946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.740 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds