Wall clock time and date at job start Wed Apr 1 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36928 * 120.00300 * 2 1 4 4 H 1.08001 * 120.00487 * 202.70549 * 3 2 1 5 5 C 1.38817 * 119.99773 * 22.70683 * 3 2 1 6 6 N 1.31620 * 120.00219 * 11.50841 * 5 3 2 7 7 Si 1.86805 * 119.99910 * 191.50510 * 5 3 2 8 8 H 1.48501 * 109.47205 * 90.00245 * 7 5 3 9 9 H 1.48502 * 109.47071 * 210.00219 * 7 5 3 10 10 H 1.48500 * 109.47340 * 330.00075 * 7 5 3 11 11 C 1.46502 * 119.99568 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47030 * 269.99976 * 11 2 1 13 13 O 1.42900 * 109.46899 * 65.00710 * 12 11 2 14 14 C 1.42901 * 113.99793 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47061 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47423 * 64.99439 * 15 14 13 17 17 C 1.34777 * 119.99974 * 179.97438 * 16 15 14 18 18 O 1.21540 * 120.00069 * 0.02562 * 17 16 15 19 19 C 1.47975 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.39732 * 119.42782 * 180.02562 * 19 17 16 21 21 C 1.36992 * 119.60080 * 179.97438 * 20 19 17 22 22 C 1.39896 * 118.35770 * 0.02562 * 21 20 19 23 23 N 1.35433 * 133.81333 * 179.97438 * 22 21 20 24 24 C 1.30210 * 109.58147 * 180.02562 * 23 22 21 25 25 N 1.35996 * 110.17801 * 0.02562 * 24 23 22 26 26 C 1.46503 * 126.29289 * 179.97438 * 25 24 23 27 27 C 1.37945 * 107.41434 * 359.97438 * 25 24 23 28 28 N 1.31880 * 133.82867 * 179.97438 * 27 25 24 29 29 H 1.08999 * 109.47505 * 273.91832 * 1 2 3 30 30 H 1.09004 * 109.46676 * 33.91854 * 1 2 3 31 31 H 1.09001 * 109.46883 * 153.91563 * 1 2 3 32 32 H 0.96997 * 119.99733 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46777 * 149.99982 * 11 2 1 34 34 H 1.09000 * 109.47345 * 30.00292 * 11 2 1 35 35 H 1.08994 * 109.47226 * 305.00026 * 12 11 2 36 36 H 1.09004 * 109.46609 * 185.00084 * 12 11 2 37 37 H 1.08993 * 109.47480 * 59.99092 * 14 13 12 38 38 H 1.09007 * 109.46575 * 299.99241 * 14 13 12 39 39 H 1.09000 * 109.47015 * 304.99469 * 15 14 13 40 40 H 1.09000 * 109.47318 * 184.99790 * 15 14 13 41 41 H 0.97005 * 120.00281 * 0.02562 * 16 15 14 42 42 H 1.08001 * 120.19783 * 0.02562 * 20 19 17 43 43 H 1.07994 * 120.82157 * 180.02562 * 21 20 19 44 44 H 1.08005 * 124.91620 * 179.73695 * 24 23 22 45 45 H 1.09007 * 109.46820 * 90.02135 * 26 25 24 46 46 H 1.08996 * 109.47256 * 210.02235 * 26 25 24 47 47 H 1.08995 * 109.47058 * 330.02391 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1670 1.2221 -0.3610 5 6 1.5364 2.3414 0.4641 6 7 0.3918 2.2653 1.1094 7 14 2.3355 4.0045 0.1727 8 1 1.8562 4.5651 -1.1162 9 1 1.9748 4.9276 1.2786 10 1 3.8109 3.8431 0.1241 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4433 13 8 1.2059 -1.9927 2.0822 14 6 1.3322 -2.4150 3.4415 15 6 -0.0568 -2.6879 4.0219 16 7 -0.6659 -3.8199 3.3194 17 6 -1.8983 -4.2429 3.6641 18 8 -2.5045 -3.6848 4.5576 19 6 -2.5138 -5.3860 2.9541 20 6 -3.7923 -5.8142 3.3209 21 6 -4.3656 -6.8718 2.6656 22 6 -3.6408 -7.4911 1.6418 23 7 -3.8929 -8.5303 0.8107 24 6 -2.8739 -8.7150 0.0214 25 7 -1.8990 -7.8067 0.2936 26 6 -0.6037 -7.6961 -0.3819 27 6 -2.3539 -7.0086 1.3227 28 7 -1.8417 -5.9873 1.9812 29 1 -0.3634 0.0702 1.0252 30 1 -0.3633 0.8528 -0.5735 31 1 -0.3633 -0.9230 -0.4519 32 1 -0.0369 3.0728 1.4334 33 1 3.1499 -1.1387 -0.5134 34 1 1.6084 -2.0287 -0.5130 35 1 2.9642 -0.9124 1.9819 36 1 3.0731 -2.6059 1.4449 37 1 1.8205 -1.6319 4.0214 38 1 1.9298 -3.3256 3.4850 39 1 -0.6825 -1.8040 3.8978 40 1 0.0324 -2.9238 5.0824 41 1 -0.1820 -4.2656 2.6065 42 1 -4.3255 -5.3139 4.1158 43 1 -5.3528 -7.2188 2.9327 44 1 -2.8100 -9.4818 -0.7365 45 1 -0.6943 -7.0213 -1.2332 46 1 0.1373 -7.3045 0.3149 47 1 -0.2904 -8.6803 -0.7302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571343946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:00 Heat of formation + Delta-G solvation = 18.424968 kcal Electronic energy + Delta-G solvation = -30078.691030 eV Core-core repulsion = 25877.102873 eV Total energy + Delta-G solvation = -4201.588157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.44029 -41.09722 -39.26601 -38.81879 -37.22783 -35.87362 -35.50983 -33.43695 -33.00758 -31.65900 -30.55820 -29.30145 -28.06570 -27.82552 -26.03368 -24.83860 -24.35120 -23.35014 -22.14837 -21.95285 -21.88759 -19.31081 -18.94565 -18.77486 -18.10864 -17.62333 -17.36392 -17.21405 -16.87788 -16.29048 -16.21688 -16.02001 -15.65117 -15.38274 -15.21859 -15.11050 -14.78648 -14.51861 -14.33156 -14.06909 -13.96886 -13.82979 -13.46881 -13.31678 -13.14091 -13.03659 -12.72420 -12.54199 -12.49031 -12.33939 -12.16592 -12.02554 -11.88198 -11.79391 -11.68370 -11.41458 -10.62072 -10.43303 -10.37072 -10.23234 -9.83258 -9.63418 -8.73884 -7.77732 -5.26425 -0.69413 0.08825 1.26823 1.36251 1.46374 1.47941 1.56462 1.90259 2.02084 2.52591 2.74061 2.81886 2.88961 3.20998 3.35242 3.48066 3.72830 3.76085 3.87520 3.96591 4.11543 4.17215 4.22544 4.43961 4.44522 4.47239 4.52710 4.58341 4.61438 4.68238 4.76434 4.79156 4.85866 4.91832 4.95897 4.99573 5.10211 5.19923 5.29499 5.35602 5.42011 5.66154 5.81328 5.86953 6.29970 6.35406 6.46858 6.59476 6.60512 7.04203 7.18527 7.91764 8.38127 9.25426 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002376 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.494973 B =11782.709239 C =12553.317294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.197 3.803 2 N -0.613 5.613 3 C -0.261 4.261 4 H 0.076 0.924 5 C -0.057 4.057 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.288 1.288 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.146 3.854 12 C 0.052 3.948 13 O -0.395 6.395 14 C 0.053 3.947 15 C 0.127 3.873 16 N -0.692 5.692 17 C 0.571 3.429 18 O -0.565 6.565 19 C 0.097 3.903 20 C -0.126 4.126 21 C -0.029 4.029 22 C 0.011 3.989 23 N -0.527 5.527 24 C 0.306 3.694 25 N -0.483 5.483 26 C 0.073 3.927 27 C 0.210 3.790 28 N -0.456 5.456 29 H -0.001 1.001 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.417 0.583 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.278 0.722 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -27.471 -0.884 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.336 5.336 3 C -0.391 4.391 4 H 0.094 0.906 5 C -0.252 4.252 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.215 1.215 9 H -0.226 1.226 10 H -0.189 1.189 11 C 0.020 3.980 12 C -0.027 4.027 13 O -0.314 6.314 14 C -0.023 4.023 15 C 0.003 3.997 16 N -0.343 5.343 17 C 0.356 3.644 18 O -0.443 6.443 19 C -0.051 4.051 20 C -0.149 4.149 21 C -0.056 4.056 22 C -0.111 4.111 23 N -0.247 5.247 24 C 0.020 3.980 25 N -0.175 5.175 26 C -0.067 4.067 27 C -0.029 4.029 28 N -0.172 5.172 29 H 0.017 0.983 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.254 0.746 42 H 0.181 0.819 43 H 0.191 0.809 44 H 0.293 0.707 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.786 -27.079 -0.618 27.145 hybrid contribution 0.548 1.492 0.159 1.598 sum -1.238 -25.586 -0.458 25.620 Atomic orbital electron populations 1.20291 0.83104 0.94452 0.96962 1.44096 1.01939 1.01697 1.85862 1.19589 0.98432 0.86619 1.34456 0.90634 1.25842 0.98563 1.01948 0.98872 1.70293 1.19694 1.27117 1.41304 0.85251 0.78567 0.79944 0.76574 1.21519 1.22579 1.18918 1.21134 0.96744 0.87006 0.93147 1.23255 0.85298 0.97961 0.96190 1.87982 1.31004 1.87753 1.24702 1.22712 0.95714 0.99758 0.84160 1.21423 0.93189 0.88357 0.96698 1.45728 1.16831 1.33157 1.38561 1.17972 0.81507 0.82555 0.82371 1.90773 1.63112 1.58108 1.32336 1.20719 0.93680 0.96236 0.94423 1.21648 0.94504 0.97218 1.01563 1.20715 1.00635 0.92843 0.91415 1.20228 0.94283 0.97047 0.99513 1.70478 1.27567 1.17606 1.09041 1.26671 0.81006 0.92619 0.97677 1.45445 1.18321 1.26012 1.27690 1.22379 0.79828 1.06611 0.97844 1.19184 0.93690 0.95012 0.94987 1.66043 1.37084 1.07411 1.06670 0.98257 0.97287 0.96703 0.94675 0.90768 0.92411 0.95840 0.91255 0.92148 0.90333 0.93219 0.88217 0.74619 0.81889 0.80939 0.70709 0.89795 0.90070 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.55 8.61 127.77 1.10 11.65 16 2 N -0.61 -31.41 2.89 -726.91 -2.10 -33.51 16 3 C -0.26 -14.40 9.67 84.04 0.81 -13.59 16 4 H 0.08 3.96 7.85 -2.91 -0.02 3.93 16 5 C -0.06 -3.29 5.12 84.86 0.43 -2.86 16 6 N -0.94 -57.73 10.62 21.65 0.23 -57.50 16 7 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 8 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 9 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 C 0.15 5.72 6.11 86.38 0.53 6.25 16 12 C 0.05 1.82 6.28 71.98 0.45 2.27 16 13 O -0.39 -14.70 9.84 -148.98 -1.47 -16.17 16 14 C 0.05 1.53 6.07 71.98 0.44 1.97 16 15 C 0.13 3.77 6.06 86.38 0.52 4.30 16 16 N -0.69 -20.18 5.49 -465.86 -2.56 -22.74 16 17 C 0.57 17.98 7.80 86.82 0.68 18.66 16 18 O -0.56 -20.69 16.29 -3.84 -0.06 -20.75 16 19 C 0.10 2.70 6.74 41.96 0.28 2.98 16 20 C -0.13 -2.97 9.55 22.34 0.21 -2.76 16 21 C -0.03 -0.60 10.16 22.38 0.23 -0.37 16 22 C 0.01 0.26 7.25 39.69 0.29 0.55 16 23 N -0.53 -10.27 11.27 -191.65 -2.16 -12.43 16 24 C 0.31 3.40 12.49 180.04 2.25 5.65 16 25 N -0.48 -7.01 3.20 -549.30 -1.76 -8.77 16 26 C 0.07 0.51 11.19 127.77 1.43 1.94 16 27 C 0.21 4.84 8.01 134.06 1.07 5.92 16 28 N -0.46 -11.96 9.54 -181.83 -1.73 -13.69 16 29 H 0.00 -0.05 7.43 -2.39 -0.02 -0.07 16 30 H 0.01 0.49 7.20 -2.38 -0.02 0.47 16 31 H 0.01 0.70 7.85 -2.39 -0.02 0.68 16 32 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16 34 H 0.06 2.08 7.87 -2.39 -0.02 2.06 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.71 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.42 11.26 7.78 -92.70 -0.72 10.54 16 42 H 0.16 3.53 7.61 -2.91 -0.02 3.50 16 43 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.28 -0.43 8.06 -2.91 -0.02 -0.46 16 45 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: -1.00 -82.60 400.46 1.42 -81.18 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.27 Total: 13.92 kcal Atomic # 6 Polarization: 31.82 SS G_CDS: 10.73 Total: 42.55 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -10.08 Total: -148.64 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.53 Total: -36.92 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -82.60 1.42 -81.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571343946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.608 kcal (2) G-P(sol) polarization free energy of solvation -82.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds