Wall clock time and date at job start Wed Apr 1 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39795 * 125.34073 * 2 1 4 4 C 1.30195 * 110.13099 * 180.02562 * 3 2 1 5 5 C 1.45970 * 107.58944 * 0.02562 * 4 3 2 6 6 C 1.39662 * 134.12534 * 180.30399 * 5 4 3 7 7 C 1.39508 * 117.95158 * 180.15068 * 6 5 4 8 8 C 1.47685 * 120.40538 * 179.78728 * 7 6 5 9 9 O 1.21573 * 120.00279 * 359.72185 * 8 7 6 10 10 N 1.34777 * 119.99444 * 179.71880 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72385 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 O 1.42903 * 109.46927 * 64.99809 * 12 11 10 14 14 C 1.42894 * 113.99688 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47257 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47519 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47225 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99787 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00054 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99668 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99877 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00154 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46976 * 90.00342 * 22 20 18 24 24 H 1.48498 * 109.47050 * 210.00004 * 22 20 18 25 25 H 1.48490 * 109.47114 * 329.99794 * 22 20 18 26 26 C 1.40185 * 119.17733 * 359.50889 * 7 6 5 27 27 N 1.31185 * 121.37943 * 0.25961 * 26 7 6 28 28 C 1.32929 * 121.84272 * 359.97438 * 27 26 7 29 29 H 1.08995 * 109.46664 * 269.96011 * 1 2 3 30 30 H 1.09000 * 109.46674 * 29.95355 * 1 2 3 31 31 H 1.08994 * 109.47071 * 149.95587 * 1 2 3 32 32 H 1.08006 * 126.20969 * 179.97438 * 4 3 2 33 33 H 1.08005 * 121.01979 * 359.91436 * 6 5 4 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 36 36 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 37 37 H 1.09000 * 109.47275 * 184.99914 * 12 11 10 38 38 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 39 39 H 1.08998 * 109.47845 * 300.00480 * 14 13 12 40 40 H 1.08999 * 109.47565 * 60.00461 * 14 13 12 41 41 H 1.09003 * 109.46991 * 300.00327 * 15 14 13 42 42 H 1.09000 * 109.47466 * 59.99691 * 15 14 13 43 43 H 1.09003 * 109.46759 * 299.99272 * 16 15 14 44 44 H 1.08992 * 109.47741 * 59.99386 * 16 15 14 45 45 H 0.96998 * 120.00115 * 359.97438 * 17 16 15 46 46 H 0.97005 * 119.99965 * 180.02562 * 21 20 18 47 47 H 1.07999 * 119.30570 * 180.27041 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5907 -0.6597 -0.0016 6 6 4.6327 -1.5896 0.0029 7 6 4.3001 -2.9444 -0.0033 8 6 5.3589 -3.9740 -0.0038 9 8 6.5287 -3.6430 -0.0039 10 7 5.0281 -5.2806 -0.0040 11 6 6.0784 -6.3019 -0.0106 12 6 5.4383 -7.6916 -0.0165 13 8 4.7200 -7.8800 -1.2374 14 6 4.0811 -9.1536 -1.3452 15 6 3.3470 -9.2443 -2.6845 16 6 2.6624 -10.6077 -2.7997 17 7 1.9600 -10.6947 -4.0824 18 6 1.2704 -11.8316 -4.4096 19 1 1.2446 -12.6642 -3.7223 20 6 0.6045 -11.9138 -5.6248 21 7 -0.0580 -13.0067 -5.9396 22 14 0.6485 -10.4733 -6.8133 23 1 1.8123 -10.6185 -7.7241 24 1 -0.6042 -10.4510 -7.6106 25 1 0.7721 -9.2055 -6.0502 26 6 2.9484 -3.3163 -0.0031 27 7 1.9927 -2.4177 -0.0023 28 6 2.2553 -1.1146 -0.0011 29 1 -0.3632 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5145 32 1 4.3744 1.4723 -0.0011 33 1 5.6642 -1.2696 0.0070 34 1 4.0948 -5.5447 -0.0043 35 1 6.6958 -6.1826 -0.9010 36 1 6.6984 -6.1913 0.8790 37 1 6.2163 -8.4504 0.0682 38 1 4.7522 -7.7791 0.8259 39 1 4.8311 -9.9425 -1.2882 40 1 3.3669 -9.2720 -0.5304 41 1 2.5969 -8.4555 -2.7418 42 1 4.0614 -9.1261 -3.4992 43 1 3.4122 -11.3968 -2.7423 44 1 1.9479 -10.7256 -1.9851 45 1 1.9835 -9.9470 -4.6999 46 1 -0.5231 -13.0643 -6.7890 47 1 2.6886 -4.3646 -0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571354221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:01 Heat of formation + Delta-G solvation = 36.675255 kcal Electronic energy + Delta-G solvation = -28412.223140 eV Core-core repulsion = 24211.426375 eV Total energy + Delta-G solvation = -4200.796765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -42.13457 -40.20102 -38.49562 -38.06598 -35.67474 -34.93687 -34.35535 -32.47456 -32.21314 -31.24674 -30.37310 -29.15657 -27.36553 -25.34046 -24.61072 -24.31466 -22.68415 -22.21325 -21.47411 -21.12785 -21.02170 -18.51228 -18.23117 -17.57478 -17.30955 -16.89552 -16.52707 -16.39594 -16.05528 -15.57916 -15.37944 -14.85039 -14.70525 -14.37863 -14.28554 -14.01341 -13.92832 -13.74728 -13.67038 -13.52847 -13.12668 -13.02671 -12.76654 -12.70035 -12.33273 -11.93662 -11.67589 -11.63528 -11.04708 -11.02272 -10.94319 -10.74383 -10.72048 -10.59451 -10.14391 -9.93762 -9.74558 -9.63603 -9.60764 -9.46467 -8.91060 -8.84092 -7.25385 -5.78099 -3.14123 0.21338 0.29813 1.57368 1.87526 2.45811 2.72972 3.33926 3.37859 3.40682 3.41468 3.45892 3.54020 3.70681 4.01259 4.23296 4.28128 4.49335 4.58263 4.58795 4.74566 4.76132 4.79882 4.86032 4.97590 5.03478 5.05249 5.13230 5.15955 5.28381 5.41573 5.44755 5.51582 5.55924 5.62063 5.73472 5.84171 5.92987 5.93099 6.02813 6.18128 6.18371 6.66993 6.71666 6.83277 7.03467 7.09916 7.29049 7.82236 7.97622 8.40845 9.19740 9.92175 10.11824 11.40096 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009548 B = 0.001898 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.737590 B =14746.338605 C =17006.968950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.391 5.391 3 N -0.239 5.239 4 C 0.097 3.903 5 C -0.240 4.240 6 C 0.075 3.925 7 C -0.236 4.236 8 C 0.573 3.427 9 O -0.541 6.541 10 N -0.719 5.719 11 C 0.124 3.876 12 C 0.047 3.953 13 O -0.388 6.388 14 C 0.068 3.932 15 C -0.129 4.129 16 C 0.160 3.840 17 N -0.756 5.756 18 C -0.246 4.246 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.208 3.792 27 N -0.502 5.502 28 C 0.331 3.669 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.207 0.793 33 H 0.156 0.844 34 H 0.404 0.596 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.812 27.384 18.583 34.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.180 5.180 3 N -0.051 5.051 4 C -0.102 4.102 5 C -0.250 4.250 6 C 0.046 3.954 7 C -0.243 4.243 8 C 0.359 3.641 9 O -0.419 6.419 10 N -0.371 5.371 11 C 0.001 3.999 12 C -0.030 4.030 13 O -0.308 6.308 14 C -0.009 4.009 15 C -0.167 4.167 16 C 0.033 3.967 17 N -0.402 5.402 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.037 3.963 27 N -0.216 5.216 28 C 0.091 3.909 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.223 0.777 33 H 0.173 0.827 34 H 0.240 0.760 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.194 0.806 46 H 0.070 0.930 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.583 28.323 18.458 34.879 hybrid contribution 0.707 0.103 -0.769 1.050 sum 9.290 28.425 17.689 34.745 Atomic orbital electron populations 1.21908 0.72891 1.04854 1.03587 1.48196 1.06619 0.99989 1.63234 1.76771 1.02742 1.07336 1.18235 1.25167 0.94942 0.92467 0.97629 1.20477 0.93996 0.94894 1.15645 1.21167 0.99353 0.89936 0.84906 1.20607 0.94825 0.94498 1.14395 1.17782 0.87965 0.82134 0.76174 1.90790 1.19162 1.81569 1.50346 1.45806 1.10807 1.05295 1.75228 1.21441 0.90131 0.84955 1.03417 1.22738 0.96225 0.96153 0.87907 1.87916 1.68933 1.36146 1.37758 1.22487 0.95563 0.84301 0.98535 1.21718 0.99687 0.99505 0.95757 1.20489 0.94113 0.92922 0.89183 1.42682 1.62429 1.17511 1.17574 1.19055 1.23590 0.93039 1.01921 0.89192 1.24690 0.99734 0.97070 0.97727 1.69709 1.37875 1.26775 1.23797 0.86522 0.77281 0.82959 0.81637 1.21016 1.21689 1.20265 1.22889 0.86788 0.98412 0.88230 1.66685 1.37311 0.98521 1.19096 1.19160 0.88718 0.88185 0.94806 0.90774 0.89137 0.88814 0.77673 0.82673 0.76029 0.90175 0.89710 0.91350 0.92500 0.92993 0.93032 0.91233 0.91193 0.95438 0.95482 0.80563 0.93032 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.64 11.43 59.85 0.68 1.32 16 2 N -0.39 -3.57 4.03 -67.17 -0.27 -3.84 16 3 N -0.24 -2.11 12.39 31.87 0.39 -1.72 16 4 C 0.10 0.66 12.30 -15.15 -0.19 0.48 16 5 C -0.24 -2.07 6.36 -105.20 -0.67 -2.74 16 6 C 0.08 0.61 9.76 -38.58 -0.38 0.24 16 7 C -0.24 -2.05 5.89 -104.83 -0.62 -2.67 16 8 C 0.57 5.62 7.77 -12.40 -0.10 5.52 16 9 O -0.54 -6.94 16.40 5.30 0.09 -6.85 16 10 N -0.72 -5.74 5.46 -61.30 -0.33 -6.07 16 11 C 0.12 0.96 6.06 -4.04 -0.02 0.93 16 12 C 0.05 0.35 6.07 37.16 0.23 0.57 16 13 O -0.39 -4.19 10.29 -35.23 -0.36 -4.56 16 14 C 0.07 0.77 5.94 37.16 0.22 0.99 16 15 C -0.13 -1.91 5.70 -26.73 -0.15 -2.06 16 16 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 17 N -0.76 -18.13 5.41 -59.91 -0.32 -18.45 16 18 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 22 Si 0.89 22.27 27.73 -169.99 -4.71 17.55 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 26 C 0.21 1.71 10.69 -17.10 -0.18 1.52 16 27 N -0.50 -5.02 10.37 -12.03 -0.12 -5.14 16 28 C 0.33 3.32 7.96 -156.09 -1.24 2.08 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.21 0.52 8.06 -52.48 -0.42 0.10 16 33 H 0.16 1.04 7.72 -52.48 -0.41 0.64 16 34 H 0.40 2.55 6.51 -40.82 -0.27 2.28 16 35 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.36 8.47 5.53 -40.82 -0.23 8.25 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.17 0.92 6.39 -52.49 -0.34 0.59 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -37.59 401.35 -8.26 -45.85 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.74 Total: 3.85 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.70 Total: 1.99 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.12 Total: -63.89 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.28 Total: -11.40 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.59 -8.26 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571354221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.524 kcal (2) G-P(sol) polarization free energy of solvation -37.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds