Wall clock time and date at job start Wed Apr 1 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39795 * 125.34073 * 2 1 4 4 C 1.30195 * 110.13099 * 180.02562 * 3 2 1 5 5 C 1.45970 * 107.58944 * 0.02562 * 4 3 2 6 6 C 1.39662 * 134.12534 * 180.30399 * 5 4 3 7 7 C 1.39508 * 117.95158 * 180.15068 * 6 5 4 8 8 C 1.47685 * 120.40538 * 179.78728 * 7 6 5 9 9 O 1.21573 * 120.00279 * 359.72185 * 8 7 6 10 10 N 1.34777 * 119.99444 * 179.71880 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72385 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 O 1.42903 * 109.46927 * 64.99809 * 12 11 10 14 14 C 1.42894 * 113.99688 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47257 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47519 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47225 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99787 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00054 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99668 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99877 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00154 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46976 * 90.00342 * 22 20 18 24 24 H 1.48498 * 109.47050 * 210.00004 * 22 20 18 25 25 H 1.48490 * 109.47114 * 329.99794 * 22 20 18 26 26 C 1.40185 * 119.17733 * 359.50889 * 7 6 5 27 27 N 1.31185 * 121.37943 * 0.25961 * 26 7 6 28 28 C 1.32929 * 121.84272 * 359.97438 * 27 26 7 29 29 H 1.08995 * 109.46664 * 269.96011 * 1 2 3 30 30 H 1.09000 * 109.46674 * 29.95355 * 1 2 3 31 31 H 1.08994 * 109.47071 * 149.95587 * 1 2 3 32 32 H 1.08006 * 126.20969 * 179.97438 * 4 3 2 33 33 H 1.08005 * 121.01979 * 359.91436 * 6 5 4 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 36 36 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 37 37 H 1.09000 * 109.47275 * 184.99914 * 12 11 10 38 38 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 39 39 H 1.08998 * 109.47845 * 300.00480 * 14 13 12 40 40 H 1.08999 * 109.47565 * 60.00461 * 14 13 12 41 41 H 1.09003 * 109.46991 * 300.00327 * 15 14 13 42 42 H 1.09000 * 109.47466 * 59.99691 * 15 14 13 43 43 H 1.09003 * 109.46759 * 299.99272 * 16 15 14 44 44 H 1.08992 * 109.47741 * 59.99386 * 16 15 14 45 45 H 0.96998 * 120.00115 * 359.97438 * 17 16 15 46 46 H 0.97005 * 119.99965 * 180.02562 * 21 20 18 47 47 H 1.07999 * 119.30570 * 180.27041 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5907 -0.6597 -0.0016 6 6 4.6327 -1.5896 0.0029 7 6 4.3001 -2.9444 -0.0033 8 6 5.3589 -3.9740 -0.0038 9 8 6.5287 -3.6430 -0.0039 10 7 5.0281 -5.2806 -0.0040 11 6 6.0784 -6.3019 -0.0106 12 6 5.4383 -7.6916 -0.0165 13 8 4.7200 -7.8800 -1.2374 14 6 4.0811 -9.1536 -1.3452 15 6 3.3470 -9.2443 -2.6845 16 6 2.6624 -10.6077 -2.7997 17 7 1.9600 -10.6947 -4.0824 18 6 1.2704 -11.8316 -4.4096 19 1 1.2446 -12.6642 -3.7223 20 6 0.6045 -11.9138 -5.6248 21 7 -0.0580 -13.0067 -5.9396 22 14 0.6485 -10.4733 -6.8133 23 1 1.8123 -10.6185 -7.7241 24 1 -0.6042 -10.4510 -7.6106 25 1 0.7721 -9.2055 -6.0502 26 6 2.9484 -3.3163 -0.0031 27 7 1.9927 -2.4177 -0.0023 28 6 2.2553 -1.1146 -0.0011 29 1 -0.3632 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5145 32 1 4.3744 1.4723 -0.0011 33 1 5.6642 -1.2696 0.0070 34 1 4.0948 -5.5447 -0.0043 35 1 6.6958 -6.1826 -0.9010 36 1 6.6984 -6.1913 0.8790 37 1 6.2163 -8.4504 0.0682 38 1 4.7522 -7.7791 0.8259 39 1 4.8311 -9.9425 -1.2882 40 1 3.3669 -9.2720 -0.5304 41 1 2.5969 -8.4555 -2.7418 42 1 4.0614 -9.1261 -3.4992 43 1 3.4122 -11.3968 -2.7423 44 1 1.9479 -10.7256 -1.9851 45 1 1.9835 -9.9470 -4.6999 46 1 -0.5231 -13.0643 -6.7890 47 1 2.6886 -4.3646 -0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571354221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:56 Heat of formation + Delta-G solvation = 8.801764 kcal Electronic energy + Delta-G solvation = -28413.431825 eV Core-core repulsion = 24211.426375 eV Total energy + Delta-G solvation = -4202.005450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.73620 -40.90779 -39.22702 -38.78856 -37.18346 -35.88217 -34.93776 -34.17694 -32.91011 -32.27083 -31.62210 -29.96863 -27.90396 -26.84706 -25.24761 -24.95953 -23.91658 -23.30903 -22.42575 -22.04368 -21.81100 -19.64681 -19.15016 -18.81786 -17.99056 -17.68046 -17.26114 -16.99876 -16.77212 -16.63380 -16.33106 -16.10780 -15.61931 -15.40440 -15.32344 -15.09756 -14.82764 -14.62400 -14.50775 -14.42807 -14.18482 -13.86350 -13.56476 -13.48093 -13.36549 -13.30588 -12.86188 -12.63607 -12.29068 -12.27015 -12.11605 -11.95794 -11.88725 -11.80280 -11.64001 -11.35598 -10.97965 -10.62264 -10.48773 -10.28064 -10.14623 -9.44570 -9.31197 -8.03889 -5.37876 -0.38342 -0.35360 1.03466 1.32390 1.38483 1.41470 1.48939 1.74686 2.08794 2.47903 2.61409 2.69242 2.98956 3.14995 3.27540 3.46537 3.60941 3.70011 3.71384 3.92124 4.00715 4.12214 4.23694 4.26439 4.34438 4.36795 4.37182 4.39183 4.45731 4.58388 4.62281 4.64780 4.75616 4.79984 4.83245 4.86165 4.96124 5.08574 5.30470 5.32082 5.33987 5.38580 5.61210 5.74479 6.19980 6.24910 6.28583 6.45825 6.67067 7.06791 7.13331 7.83320 8.01534 9.17302 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009548 B = 0.001898 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.737590 B =14746.338605 C =17006.968950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.401 5.401 3 N -0.264 5.264 4 C 0.110 3.890 5 C -0.252 4.252 6 C 0.079 3.921 7 C -0.245 4.245 8 C 0.574 3.426 9 O -0.576 6.576 10 N -0.711 5.711 11 C 0.124 3.876 12 C 0.048 3.952 13 O -0.405 6.405 14 C 0.076 3.924 15 C -0.118 4.118 16 C 0.155 3.845 17 N -0.762 5.762 18 C -0.238 4.238 19 H 0.059 0.941 20 C -0.066 4.066 21 N -0.983 5.983 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.251 1.251 26 C 0.210 3.790 27 N -0.522 5.522 28 C 0.309 3.691 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.168 0.832 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.031 0.969 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.813 29.252 19.357 36.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.075 5.075 4 C -0.089 4.089 5 C -0.262 4.262 6 C 0.050 3.950 7 C -0.252 4.252 8 C 0.362 3.638 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.001 3.999 12 C -0.029 4.029 13 O -0.325 6.325 14 C -0.001 4.001 15 C -0.156 4.156 16 C 0.029 3.971 17 N -0.408 5.408 18 C -0.369 4.369 19 H 0.077 0.923 20 C -0.257 4.257 21 N -0.633 5.633 22 Si 0.784 3.216 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.176 1.176 26 C 0.040 3.960 27 N -0.237 5.237 28 C 0.069 3.931 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.262 0.738 33 H 0.185 0.815 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.587 30.212 19.279 37.099 hybrid contribution 0.442 -0.532 -0.901 1.136 sum 10.029 29.680 18.377 36.321 Atomic orbital electron populations 1.22080 0.71776 1.05456 1.04390 1.48491 1.07507 0.99860 1.63162 1.76756 1.03549 1.07605 1.19632 1.25846 0.95382 0.92187 0.95448 1.20699 0.93576 0.95901 1.16023 1.21352 0.99887 0.89838 0.83900 1.20590 0.94781 0.94541 1.15328 1.17904 0.87583 0.82726 0.75602 1.90769 1.20491 1.82138 1.52285 1.45793 1.11475 1.04846 1.74166 1.21480 0.90068 0.85130 1.03234 1.22892 0.96808 0.96017 0.87169 1.87869 1.69363 1.35604 1.39632 1.22301 0.95998 0.85013 0.96801 1.21531 0.99514 0.96688 0.97871 1.20674 0.93979 0.95566 0.86851 1.42741 1.62350 1.16119 1.19564 1.19063 1.23086 0.93595 1.01150 0.92334 1.25554 1.00009 1.00187 0.99975 1.69889 1.39551 1.29370 1.24489 0.85380 0.76997 0.80200 0.79050 1.20423 1.22134 1.17592 1.23249 0.86392 0.99240 0.87159 1.66721 1.37978 0.98838 1.20140 1.19505 0.89744 0.88546 0.95271 0.89868 0.87897 0.88851 0.73839 0.81481 0.74972 0.91813 0.88496 0.89878 0.90453 0.92105 0.91465 0.91295 0.91756 0.95339 0.95092 0.80094 0.93282 0.79064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 11.43 127.77 1.46 2.63 16 2 N -0.40 -7.11 4.03 -366.43 -1.48 -8.59 16 3 N -0.26 -4.40 12.39 -53.08 -0.66 -5.05 16 4 C 0.11 1.33 12.30 86.94 1.07 2.40 16 5 C -0.25 -4.09 6.36 -20.24 -0.13 -4.22 16 6 C 0.08 1.21 9.76 22.92 0.22 1.43 16 7 C -0.24 -4.00 5.89 -20.00 -0.12 -4.12 16 8 C 0.57 10.59 7.77 86.74 0.67 11.27 16 9 O -0.58 -14.37 16.40 -3.95 -0.06 -14.43 16 10 N -0.71 -9.99 5.46 -466.11 -2.54 -12.53 16 11 C 0.12 1.66 6.06 86.38 0.52 2.19 16 12 C 0.05 0.55 6.07 71.98 0.44 0.99 16 13 O -0.40 -7.54 10.29 -148.98 -1.53 -9.07 16 14 C 0.08 1.49 5.94 71.98 0.43 1.91 16 15 C -0.12 -3.21 5.70 30.59 0.17 -3.03 16 16 C 0.16 5.58 6.26 86.38 0.54 6.12 16 17 N -0.76 -35.59 5.41 -343.46 -1.86 -37.45 16 18 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.98 -63.19 13.97 21.65 0.30 -62.89 16 22 Si 0.96 45.69 27.73 68.60 1.90 47.59 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 26 C 0.21 3.21 10.69 85.26 0.91 4.12 16 27 N -0.52 -10.08 10.37 -191.96 -1.99 -12.07 16 28 C 0.31 6.04 7.96 134.18 1.07 7.11 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.25 0.58 8.06 -2.91 -0.02 0.55 16 33 H 0.17 2.05 7.72 -2.91 -0.02 2.03 16 34 H 0.41 4.21 6.51 -92.71 -0.60 3.61 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.37 16.34 5.53 -92.71 -0.51 15.83 16 46 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 47 H 0.19 1.73 6.39 -2.91 -0.02 1.71 16 Total: -1.00 -81.98 401.35 0.53 -81.45 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.17 Total: 20.49 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 8.61 Total: 12.56 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -8.22 Total: -138.58 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.60 Total: -23.51 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -81.98 0.53 -81.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571354221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.256 kcal (2) G-P(sol) polarization free energy of solvation -81.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds