Wall clock time and date at job start Wed Apr 1 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34768 * 120.00398 * 2 1 4 4 O 1.21281 * 120.00385 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99898 * 0.02562 * 3 2 1 6 6 H 1.09001 * 109.04841 * 39.08077 * 5 3 2 7 7 C 1.53334 * 109.10388 * 279.99991 * 5 3 2 8 8 C 1.50666 * 107.88522 * 282.26276 * 7 5 3 9 9 C 1.33057 * 130.80370 * 152.90385 * 8 7 5 10 10 N 1.34745 * 108.03730 * 179.65951 * 9 8 7 11 11 C 1.30825 * 109.53890 * 359.97438 * 10 9 8 12 12 N 1.35050 * 108.33390 * 0.23434 * 11 10 9 13 13 C 1.34572 * 131.28540 * 179.23091 * 12 11 10 14 14 O 1.21493 * 120.70521 * 9.47102 * 13 12 11 15 15 N 1.34833 * 118.59098 * 189.49164 * 13 12 11 16 16 C 1.46509 * 119.99644 * 179.97438 * 2 1 3 17 17 H 1.09005 * 109.46778 * 180.02562 * 16 2 1 18 18 C 1.52995 * 109.46919 * 299.99858 * 16 2 1 19 19 N 1.46497 * 109.47702 * 304.99849 * 18 16 2 20 20 C 1.36933 * 120.00665 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99717 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00610 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00257 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99640 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46920 * 89.99822 * 24 22 20 26 26 H 1.48499 * 109.47067 * 209.99915 * 24 22 20 27 27 H 1.48495 * 109.47354 * 330.00257 * 24 22 20 28 28 C 1.52998 * 109.47016 * 59.99973 * 16 2 1 29 29 C 1.52994 * 117.49639 * 248.74320 * 28 16 2 30 30 C 1.53001 * 117.49740 * 180.08496 * 28 16 2 31 31 H 1.08994 * 109.47216 * 89.99958 * 1 2 3 32 32 H 1.08998 * 109.47088 * 210.00426 * 1 2 3 33 33 H 1.09003 * 109.46918 * 330.00145 * 1 2 3 34 34 H 1.09001 * 109.77626 * 162.67092 * 7 5 3 35 35 H 1.08998 * 109.77803 * 41.86286 * 7 5 3 36 36 H 1.07995 * 125.98394 * 359.63783 * 9 8 7 37 37 H 1.07998 * 125.83198 * 180.20670 * 11 10 9 38 38 H 0.97002 * 118.56423 * 191.81870 * 15 13 12 39 39 H 1.09000 * 109.47478 * 65.00112 * 18 16 2 40 40 H 1.09007 * 109.47025 * 185.00180 * 18 16 2 41 41 H 0.97010 * 119.99476 * 0.02562 * 19 18 16 42 42 H 0.96995 * 120.00051 * 179.97438 * 23 22 20 43 43 H 1.09001 * 115.54621 * 34.41829 * 28 16 2 44 44 H 1.09002 * 117.50554 * 0.02562 * 29 28 16 45 45 H 1.09000 * 117.49596 * 145.02421 * 29 28 16 46 46 H 1.08994 * 117.50036 * 214.98041 * 30 28 16 47 47 H 1.09008 * 117.49601 * 0.02562 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4722 0.0006 6 1 0.5152 2.3803 0.6504 7 6 0.9162 2.7814 -1.4260 8 6 2.0983 3.3067 -2.1984 9 6 2.3717 3.2714 -3.5001 10 7 3.5546 3.8865 -3.6949 11 6 4.0245 4.3044 -2.5477 12 7 3.1488 3.9599 -1.5790 13 6 3.1795 4.1473 -0.2468 14 8 4.0227 4.8601 0.2602 15 7 2.2548 3.5269 0.5135 16 6 2.1975 -1.2689 0.0006 17 1 3.2692 -1.0697 0.0009 18 6 1.8278 -2.0705 1.2502 19 7 2.0707 -1.2554 2.4430 20 6 1.8113 -1.7669 3.6864 21 1 1.4272 -2.7713 3.7877 22 6 2.0409 -0.9943 4.8166 23 7 1.7910 -1.4859 6.0117 24 14 2.7045 0.7430 4.6412 25 1 1.5716 1.6961 4.5238 26 1 3.5175 1.0852 5.8358 27 1 3.5516 0.8289 3.4247 28 6 1.8278 -2.0717 -1.2483 29 6 1.0114 -3.3503 -1.0501 30 6 2.4912 -3.4381 -1.4317 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 0.1285 3.5343 -1.4001 35 1 0.5427 1.8719 -1.8967 36 1 1.7538 2.8272 -4.2665 37 1 4.9542 4.8340 -2.4004 38 1 2.1639 3.7924 1.4421 39 1 0.7741 -2.3459 1.2067 40 1 2.4376 -2.9729 1.2965 41 1 2.4153 -0.3531 2.3519 42 1 1.9518 -0.9462 6.8014 43 1 1.6316 -1.4830 -2.1445 44 1 0.7373 -3.6195 -0.0300 45 1 0.2784 -3.6032 -1.8161 46 1 2.7311 -3.7487 -2.4486 47 1 3.1907 -3.7653 -0.6624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571364484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:43 Heat of formation + Delta-G solvation = 72.367277 kcal Electronic energy + Delta-G solvation = -32479.925389 eV Core-core repulsion = 28280.676346 eV Total energy + Delta-G solvation = -4199.249043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.31801 -40.57595 -39.46222 -38.18855 -36.31521 -35.34203 -34.34704 -33.29732 -32.20870 -31.44456 -29.58402 -28.29422 -26.87915 -25.26762 -24.47131 -24.00053 -22.54299 -21.82600 -21.74699 -21.05161 -19.48896 -19.00055 -18.29124 -17.75241 -17.53133 -17.13824 -16.64230 -16.37372 -15.75987 -15.60660 -15.22975 -14.86978 -14.61529 -14.31168 -14.04103 -13.99465 -13.88699 -13.70850 -13.34462 -12.95997 -12.92011 -12.76136 -12.69172 -12.44002 -12.17403 -11.75997 -11.69825 -11.27648 -11.09361 -10.97095 -10.87756 -10.62041 -10.48862 -10.43652 -10.40514 -10.24096 -9.92077 -9.68365 -9.38339 -8.99110 -8.88353 -8.64010 -7.32840 -5.85910 -3.21473 0.92797 1.93037 2.45619 2.54130 2.69460 2.98533 3.06071 3.24158 3.38426 3.40527 3.81415 4.00721 4.04399 4.19718 4.35618 4.50959 4.51271 4.61778 4.66114 4.89021 4.96401 4.97757 5.03565 5.07529 5.11037 5.16168 5.31380 5.41189 5.51431 5.54345 5.61794 5.67619 5.73728 5.78076 5.94042 6.03044 6.12394 6.17791 6.22137 6.32001 6.38381 6.44043 6.64281 6.83109 7.29045 7.47757 7.74782 7.88877 8.04493 8.33042 9.11676 9.84432 10.04064 11.32250 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.004783 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.794314 B = 5852.967433 C = 7863.691416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.590 5.590 3 C 0.495 3.505 4 O -0.522 6.522 5 C 0.116 3.884 6 H 0.133 0.867 7 C -0.049 4.049 8 C -0.034 4.034 9 C 0.010 3.990 10 N -0.484 5.484 11 C 0.256 3.744 12 N -0.452 5.452 13 C 0.735 3.265 14 O -0.528 6.528 15 N -0.704 5.704 16 C 0.158 3.842 17 H 0.103 0.897 18 C 0.147 3.853 19 N -0.751 5.751 20 C -0.245 4.245 21 H 0.091 0.909 22 C 0.010 3.990 23 N -0.931 5.931 24 Si 0.874 3.126 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.274 1.274 28 C -0.159 4.159 29 C -0.181 4.181 30 C -0.173 4.173 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.180 0.820 37 H 0.219 0.781 38 H 0.427 0.573 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 6.382 -20.047 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.323 5.323 3 C 0.279 3.721 4 O -0.397 6.397 5 C 0.006 3.994 6 H 0.151 0.849 7 C -0.089 4.089 8 C -0.141 4.141 9 C -0.132 4.132 10 N -0.201 5.201 11 C -0.027 4.027 12 N -0.157 5.157 13 C 0.436 3.564 14 O -0.399 6.399 15 N -0.360 5.360 16 C 0.055 3.945 17 H 0.121 0.879 18 C 0.019 3.981 19 N -0.397 5.397 20 C -0.375 4.375 21 H 0.109 0.891 22 C -0.187 4.187 23 N -0.579 5.579 24 Si 0.704 3.296 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.200 1.200 28 C -0.179 4.179 29 C -0.218 4.218 30 C -0.210 4.210 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.197 0.803 37 H 0.235 0.765 38 H 0.266 0.734 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.837 6.697 -20.376 22.228 hybrid contribution 0.041 1.064 1.302 1.682 sum -5.796 7.761 -19.073 21.392 Atomic orbital electron populations 1.21912 0.79290 1.04429 1.01413 1.47671 1.07147 1.05281 1.72154 1.20823 0.88535 0.85499 0.77201 1.90758 1.13545 1.86718 1.48672 1.21205 0.93886 0.86017 0.98284 0.84920 1.20528 0.94117 1.03487 0.90718 1.21315 0.93155 1.05239 0.94389 1.21841 0.95090 1.02676 0.93613 1.70782 1.10305 1.14852 1.24177 1.25335 0.96724 0.99684 0.80917 1.43805 1.19483 1.45019 1.07377 1.15552 0.81290 0.79753 0.79771 1.91030 1.35819 1.41052 1.72001 1.44761 1.37995 1.38056 1.15186 1.20936 0.97863 0.82092 0.93613 0.87914 1.21108 0.98571 0.93476 0.84913 1.42653 1.80042 1.14865 1.02146 1.19023 1.36764 1.00019 0.81686 0.89137 1.24621 1.01184 0.97740 0.95121 1.69682 1.54366 1.36898 0.96928 0.86697 0.79048 0.86342 0.77544 1.21188 1.21475 1.20003 1.22506 1.06073 0.90182 0.99096 1.23214 0.94062 1.00962 1.03571 1.22973 0.96242 0.99146 1.02653 0.92354 0.89429 0.91305 0.87488 0.86613 0.80306 0.76466 0.73389 0.94550 0.94479 0.80571 0.92974 0.87802 0.87371 0.89080 0.88906 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 8.99 59.85 0.54 1.19 16 2 N -0.59 -7.64 2.24 -173.93 -0.39 -8.03 16 3 C 0.49 7.19 6.27 -10.99 -0.07 7.12 16 4 O -0.52 -10.11 15.37 5.56 0.09 -10.03 16 5 C 0.12 1.20 2.85 -69.19 -0.20 1.00 16 6 H 0.13 0.99 6.24 -51.93 -0.32 0.67 16 7 C -0.05 -0.36 5.84 -27.73 -0.16 -0.53 16 8 C -0.03 -0.37 6.39 -81.47 -0.52 -0.89 16 9 C 0.01 0.11 11.83 -18.07 -0.21 -0.11 16 10 N -0.48 -6.18 11.27 -14.82 -0.17 -6.35 16 11 C 0.26 3.23 12.54 -90.10 -1.13 2.10 16 12 N -0.45 -6.02 2.85 -64.88 -0.19 -6.20 16 13 C 0.74 10.97 7.91 -87.05 -0.69 10.28 16 14 O -0.53 -9.33 17.75 5.37 0.10 -9.23 16 15 N -0.70 -8.93 4.85 -60.03 -0.29 -9.22 16 16 C 0.16 2.33 2.59 -67.93 -0.18 2.16 16 17 H 0.10 1.85 6.90 -51.93 -0.36 1.49 16 18 C 0.15 2.60 4.13 -4.05 -0.02 2.58 16 19 N -0.75 -17.23 5.24 -59.91 -0.31 -17.54 16 20 C -0.25 -6.73 10.47 -15.06 -0.16 -6.89 16 21 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 22 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 23 N -0.93 -28.80 13.97 55.49 0.78 -28.02 16 24 Si 0.87 22.21 27.74 -169.99 -4.71 17.49 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.27 -7.06 6.52 56.52 0.37 -6.69 16 28 C -0.16 -1.79 5.48 -90.62 -0.50 -2.29 16 29 C -0.18 -1.84 9.59 -26.70 -0.26 -2.09 16 30 C -0.17 -1.85 9.94 -26.69 -0.27 -2.12 16 31 H 0.06 0.34 7.74 -51.93 -0.40 -0.06 16 32 H 0.09 0.91 6.53 -51.93 -0.34 0.57 16 33 H 0.07 0.50 5.92 -51.93 -0.31 0.19 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.12 0.61 7.03 -51.93 -0.37 0.25 16 36 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.22 2.19 8.06 -52.49 -0.42 1.76 16 38 H 0.43 5.03 8.90 -40.82 -0.36 4.67 16 39 H 0.04 0.61 5.34 -51.93 -0.28 0.33 16 40 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 41 H 0.36 8.53 4.93 -40.82 -0.20 8.33 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.11 1.23 5.80 -51.93 -0.30 0.93 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.10 1.16 7.65 -51.92 -0.40 0.76 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -38.36 377.80 -9.47 -47.83 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.15 Total: 11.90 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -3.91 Total: 11.72 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -0.57 Total: -75.37 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.18 Total: -19.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.36 -9.47 -47.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571364484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.199 kcal (2) G-P(sol) polarization free energy of solvation -38.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds