Wall clock time and date at job start Wed Apr 1 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34768 * 120.00398 * 2 1 4 4 O 1.21281 * 120.00385 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99898 * 0.02562 * 3 2 1 6 6 H 1.09001 * 109.04841 * 39.08077 * 5 3 2 7 7 C 1.53334 * 109.10388 * 279.99991 * 5 3 2 8 8 C 1.50666 * 107.88522 * 282.26276 * 7 5 3 9 9 C 1.33057 * 130.80370 * 152.90385 * 8 7 5 10 10 N 1.34745 * 108.03730 * 179.65951 * 9 8 7 11 11 C 1.30825 * 109.53890 * 359.97438 * 10 9 8 12 12 N 1.35050 * 108.33390 * 0.23434 * 11 10 9 13 13 C 1.34572 * 131.28540 * 179.23091 * 12 11 10 14 14 O 1.21493 * 120.70521 * 9.47102 * 13 12 11 15 15 N 1.34833 * 118.59098 * 189.49164 * 13 12 11 16 16 C 1.46509 * 119.99644 * 179.97438 * 2 1 3 17 17 H 1.09005 * 109.46778 * 180.02562 * 16 2 1 18 18 C 1.52995 * 109.46919 * 299.99858 * 16 2 1 19 19 N 1.46497 * 109.47702 * 304.99849 * 18 16 2 20 20 C 1.36933 * 120.00665 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99717 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00610 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00257 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99640 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46920 * 89.99822 * 24 22 20 26 26 H 1.48499 * 109.47067 * 209.99915 * 24 22 20 27 27 H 1.48495 * 109.47354 * 330.00257 * 24 22 20 28 28 C 1.52998 * 109.47016 * 59.99973 * 16 2 1 29 29 C 1.52994 * 117.49639 * 248.74320 * 28 16 2 30 30 C 1.53001 * 117.49740 * 180.08496 * 28 16 2 31 31 H 1.08994 * 109.47216 * 89.99958 * 1 2 3 32 32 H 1.08998 * 109.47088 * 210.00426 * 1 2 3 33 33 H 1.09003 * 109.46918 * 330.00145 * 1 2 3 34 34 H 1.09001 * 109.77626 * 162.67092 * 7 5 3 35 35 H 1.08998 * 109.77803 * 41.86286 * 7 5 3 36 36 H 1.07995 * 125.98394 * 359.63783 * 9 8 7 37 37 H 1.07998 * 125.83198 * 180.20670 * 11 10 9 38 38 H 0.97002 * 118.56423 * 191.81870 * 15 13 12 39 39 H 1.09000 * 109.47478 * 65.00112 * 18 16 2 40 40 H 1.09007 * 109.47025 * 185.00180 * 18 16 2 41 41 H 0.97010 * 119.99476 * 0.02562 * 19 18 16 42 42 H 0.96995 * 120.00051 * 179.97438 * 23 22 20 43 43 H 1.09001 * 115.54621 * 34.41829 * 28 16 2 44 44 H 1.09002 * 117.50554 * 0.02562 * 29 28 16 45 45 H 1.09000 * 117.49596 * 145.02421 * 29 28 16 46 46 H 1.08994 * 117.50036 * 214.98041 * 30 28 16 47 47 H 1.09008 * 117.49601 * 0.02562 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4722 0.0006 6 1 0.5152 2.3803 0.6504 7 6 0.9162 2.7814 -1.4260 8 6 2.0983 3.3067 -2.1984 9 6 2.3717 3.2714 -3.5001 10 7 3.5546 3.8865 -3.6949 11 6 4.0245 4.3044 -2.5477 12 7 3.1488 3.9599 -1.5790 13 6 3.1795 4.1473 -0.2468 14 8 4.0227 4.8601 0.2602 15 7 2.2548 3.5269 0.5135 16 6 2.1975 -1.2689 0.0006 17 1 3.2692 -1.0697 0.0009 18 6 1.8278 -2.0705 1.2502 19 7 2.0707 -1.2554 2.4430 20 6 1.8113 -1.7669 3.6864 21 1 1.4272 -2.7713 3.7877 22 6 2.0409 -0.9943 4.8166 23 7 1.7910 -1.4859 6.0117 24 14 2.7045 0.7430 4.6412 25 1 1.5716 1.6961 4.5238 26 1 3.5175 1.0852 5.8358 27 1 3.5516 0.8289 3.4247 28 6 1.8278 -2.0717 -1.2483 29 6 1.0114 -3.3503 -1.0501 30 6 2.4912 -3.4381 -1.4317 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 0.1285 3.5343 -1.4001 35 1 0.5427 1.8719 -1.8967 36 1 1.7538 2.8272 -4.2665 37 1 4.9542 4.8340 -2.4004 38 1 2.1639 3.7924 1.4421 39 1 0.7741 -2.3459 1.2067 40 1 2.4376 -2.9729 1.2965 41 1 2.4153 -0.3531 2.3519 42 1 1.9518 -0.9462 6.8014 43 1 1.6316 -1.4830 -2.1445 44 1 0.7373 -3.6195 -0.0300 45 1 0.2784 -3.6032 -1.8161 46 1 2.7311 -3.7487 -2.4486 47 1 3.1907 -3.7653 -0.6624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571364484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:42 Heat of formation + Delta-G solvation = 44.834765 kcal Electronic energy + Delta-G solvation = -32481.119288 eV Core-core repulsion = 28280.676346 eV Total energy + Delta-G solvation = -4200.442942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.20537 -41.60172 -40.51833 -39.25171 -37.31280 -36.56023 -35.94822 -34.24491 -33.52099 -32.94450 -30.72658 -29.39660 -27.80755 -26.46164 -25.53385 -25.05307 -23.86532 -23.06981 -22.60386 -22.01413 -20.62032 -20.13797 -19.37391 -19.23513 -18.63526 -18.14341 -17.70469 -17.44312 -16.85364 -16.68899 -16.40996 -16.07623 -15.69946 -15.45983 -15.37477 -15.07613 -14.97337 -14.76226 -14.67156 -14.17799 -13.98773 -13.70102 -13.58937 -13.48575 -13.37801 -13.10020 -12.98611 -12.81499 -12.37252 -12.24600 -12.14483 -12.06718 -11.89792 -11.66117 -11.41603 -11.37714 -11.27098 -11.07040 -10.87587 -10.39022 -9.69259 -9.64416 -9.35188 -8.09884 -5.41344 -0.00199 0.98488 1.20155 1.32583 1.35804 1.44325 1.62315 1.83977 2.01076 2.17915 2.37738 2.93175 3.21349 3.21988 3.33429 3.38995 3.50068 3.59842 3.75772 3.88593 3.93046 4.00449 4.10358 4.15423 4.21724 4.32003 4.41908 4.45758 4.60687 4.64511 4.76986 4.80598 4.86804 4.87797 5.03509 5.08330 5.12518 5.21381 5.23808 5.34898 5.40178 5.51078 5.55796 5.70494 5.89110 6.14376 6.31365 6.56096 6.78216 7.00331 7.02449 7.77329 7.94690 9.11588 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.004783 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.794314 B = 5852.967433 C = 7863.691416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.587 5.587 3 C 0.484 3.516 4 O -0.583 6.583 5 C 0.115 3.885 6 H 0.172 0.828 7 C -0.042 4.042 8 C -0.037 4.037 9 C 0.001 3.999 10 N -0.500 5.500 11 C 0.232 3.768 12 N -0.462 5.462 13 C 0.731 3.269 14 O -0.571 6.571 15 N -0.701 5.701 16 C 0.167 3.833 17 H 0.063 0.937 18 C 0.146 3.854 19 N -0.754 5.754 20 C -0.226 4.226 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.977 5.977 24 Si 0.936 3.064 25 H -0.255 1.255 26 H -0.301 1.301 27 H -0.284 1.284 28 C -0.155 4.155 29 C -0.164 4.164 30 C -0.181 4.181 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.213 0.787 37 H 0.227 0.773 38 H 0.428 0.572 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.359 0.641 42 H 0.258 0.742 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 6.839 -22.776 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.318 5.318 3 C 0.271 3.729 4 O -0.462 6.462 5 C 0.007 3.993 6 H 0.189 0.811 7 C -0.080 4.080 8 C -0.143 4.143 9 C -0.140 4.140 10 N -0.218 5.218 11 C -0.050 4.050 12 N -0.167 5.167 13 C 0.432 3.568 14 O -0.445 6.445 15 N -0.356 5.356 16 C 0.063 3.937 17 H 0.081 0.919 18 C 0.020 3.980 19 N -0.400 5.400 20 C -0.357 4.357 21 H 0.084 0.916 22 C -0.243 4.243 23 N -0.628 5.628 24 Si 0.765 3.235 25 H -0.180 1.180 26 H -0.228 1.228 27 H -0.211 1.211 28 C -0.174 4.174 29 C -0.201 4.201 30 C -0.219 4.219 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.230 0.770 37 H 0.243 0.757 38 H 0.268 0.732 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.192 0.808 42 H 0.067 0.933 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.165 7.120 -23.175 25.919 hybrid contribution 1.048 0.733 2.099 2.458 sum -8.117 7.853 -21.076 23.911 Atomic orbital electron populations 1.22321 0.76378 1.04963 1.04537 1.47792 1.08823 1.04114 1.71057 1.21659 0.88136 0.87050 0.76073 1.90743 1.16332 1.87625 1.51504 1.21590 0.93570 0.82892 1.01278 0.81102 1.20844 0.93344 1.05931 0.87908 1.22005 0.93391 1.04230 0.94704 1.22433 0.94610 1.02436 0.94567 1.70779 1.11520 1.15240 1.24219 1.25654 0.97558 1.00664 0.81149 1.43873 1.20471 1.45498 1.06837 1.15791 0.81155 0.79450 0.80424 1.90983 1.37569 1.43033 1.72945 1.44861 1.37633 1.37875 1.15213 1.20581 0.96141 0.83294 0.93708 0.91891 1.21293 0.99284 0.92919 0.84501 1.42700 1.79799 1.15227 1.02233 1.19037 1.34427 0.98752 0.83488 0.91624 1.25260 1.02654 1.01516 0.94904 1.69831 1.56769 1.38461 0.97696 0.85703 0.78869 0.82746 0.76143 1.17954 1.22777 1.21095 1.22372 1.06962 0.90187 0.97884 1.23215 0.94076 0.99255 1.03547 1.23047 0.96615 0.98987 1.03252 0.87876 0.90830 0.88938 0.83481 0.83494 0.77009 0.75714 0.73214 0.92548 0.95703 0.80810 0.93297 0.85678 0.88991 0.86160 0.86883 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 8.99 127.77 1.15 1.91 16 2 N -0.59 -13.47 2.24 -822.59 -1.85 -15.31 16 3 C 0.48 12.98 6.27 87.66 0.55 13.53 16 4 O -0.58 -22.59 15.37 -3.03 -0.05 -22.63 16 5 C 0.12 1.95 2.85 44.45 0.13 2.08 16 6 H 0.17 1.57 6.24 -2.39 -0.01 1.56 16 7 C -0.04 -0.40 5.84 29.95 0.17 -0.22 16 8 C -0.04 -0.69 6.39 40.36 0.26 -0.44 16 9 C 0.00 0.01 11.83 83.09 0.98 0.99 16 10 N -0.50 -12.29 11.27 -200.81 -2.26 -14.55 16 11 C 0.23 5.90 12.54 180.17 2.26 8.15 16 12 N -0.46 -11.93 2.85 -477.59 -1.36 -13.29 16 13 C 0.73 21.62 7.91 179.10 1.42 23.03 16 14 O -0.57 -20.81 17.75 -3.69 -0.07 -20.87 16 15 N -0.70 -16.55 4.85 -462.11 -2.24 -18.79 16 16 C 0.17 4.73 2.59 44.99 0.12 4.84 16 17 H 0.06 2.32 6.90 -2.38 -0.02 2.30 16 18 C 0.15 5.10 4.13 86.38 0.36 5.46 16 19 N -0.75 -34.44 5.24 -343.46 -1.80 -36.24 16 20 C -0.23 -12.53 10.47 84.03 0.88 -11.65 16 21 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 22 C -0.05 -2.98 5.50 84.86 0.47 -2.52 16 23 N -0.98 -61.59 13.97 21.65 0.30 -61.28 16 24 Si 0.94 46.46 27.74 68.60 1.90 48.36 16 25 H -0.25 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 27 H -0.28 -14.45 6.52 99.48 0.65 -13.81 16 28 C -0.15 -3.06 5.48 -10.80 -0.06 -3.12 16 29 C -0.16 -2.80 9.59 30.62 0.29 -2.51 16 30 C -0.18 -3.55 9.94 30.62 0.30 -3.25 16 31 H 0.10 0.47 7.74 -2.39 -0.02 0.45 16 32 H 0.07 1.21 6.53 -2.39 -0.02 1.20 16 33 H 0.09 0.77 5.92 -2.39 -0.01 0.75 16 34 H 0.15 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.15 0.52 7.03 -2.39 -0.02 0.51 16 36 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.23 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.43 9.44 8.90 -92.71 -0.83 8.62 16 39 H 0.06 1.79 5.34 -2.39 -0.01 1.78 16 40 H 0.03 0.94 7.44 -2.38 -0.02 0.92 16 41 H 0.36 16.79 4.93 -92.70 -0.46 16.34 16 42 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 1.90 5.80 -2.39 -0.01 1.88 16 45 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.08 1.85 7.65 -2.38 -0.02 1.83 16 Total: -1.00 -89.65 377.80 1.56 -88.09 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.30 Total: 30.24 kcal Atomic # 6 Polarization: 27.02 SS G_CDS: 9.27 Total: 36.29 kcal Atomic # 7 Polarization: -150.26 SS G_CDS: -9.21 Total: -159.47 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.11 Total: -43.50 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Total: -89.65 1.56 -88.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571364484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.921 kcal (2) G-P(sol) polarization free energy of solvation -89.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds