Wall clock time and date at job start Wed Apr 1 2020 05:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99605 * 2 1 4 4 C 1.52997 * 109.46783 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 65.00294 * 4 3 2 6 6 C 1.36941 * 120.00187 * 274.38946 * 5 4 3 7 7 H 1.07997 * 119.99774 * 145.90796 * 6 5 4 8 8 C 1.38813 * 119.99878 * 325.92003 * 6 5 4 9 9 N 1.31620 * 119.99744 * 335.47614 * 8 6 5 10 10 Si 1.86793 * 120.00440 * 155.47930 * 8 6 5 11 11 H 1.48503 * 109.46869 * 59.99345 * 10 8 6 12 12 H 1.48491 * 109.47457 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46870 * 300.00115 * 10 8 6 14 14 C 1.46505 * 120.00163 * 94.39704 * 5 4 3 15 15 C 1.52995 * 109.46764 * 269.99764 * 14 5 4 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 14 5 17 17 C 1.34776 * 120.00395 * 180.27788 * 16 15 14 18 18 O 1.21580 * 119.99809 * 359.71644 * 17 16 15 19 19 C 1.47687 * 120.00109 * 179.72256 * 17 16 15 20 20 C 1.40179 * 120.41026 * 359.97438 * 19 17 16 21 21 N 1.31188 * 121.37584 * 179.97438 * 20 19 17 22 22 C 1.32934 * 121.84027 * 0.02562 * 21 20 19 23 23 C 1.41057 * 120.20501 * 359.97438 * 22 21 20 24 24 C 1.45981 * 106.43395 * 180.02562 * 23 22 21 25 25 N 1.30202 * 107.58537 * 359.97438 * 24 23 22 26 26 N 1.36637 * 133.26564 * 179.97438 * 22 21 20 27 27 C 1.46504 * 125.33959 * 359.97148 * 26 22 21 28 28 C 1.39507 * 120.40649 * 179.72131 * 19 17 16 29 29 H 1.09007 * 109.47126 * 60.00453 * 1 2 3 30 30 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47492 * 300.00395 * 1 2 3 32 32 H 1.09003 * 109.46869 * 59.99790 * 3 2 1 33 33 H 1.09000 * 109.47063 * 299.99490 * 3 2 1 34 34 H 1.08997 * 109.47640 * 304.99902 * 4 3 2 35 35 H 1.08999 * 109.47087 * 184.99973 * 4 3 2 36 36 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47160 * 150.00049 * 14 5 4 38 38 H 1.08997 * 109.47175 * 29.99603 * 14 5 4 39 39 H 1.09000 * 109.47560 * 59.99647 * 15 14 5 40 40 H 1.09006 * 109.47001 * 299.99769 * 15 14 5 41 41 H 0.97000 * 119.99763 * 359.97438 * 16 15 14 42 42 H 1.07995 * 119.31180 * 0.02562 * 20 19 17 43 43 H 1.07997 * 126.20535 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47642 * 89.99439 * 27 26 22 45 45 H 1.09004 * 109.46984 * 209.99871 * 27 26 22 46 46 H 1.09002 * 109.46861 * 329.99503 * 27 26 22 47 47 H 1.08003 * 121.02694 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5641 -1.2509 6 6 4.0116 -0.8002 -1.3635 7 1 3.7892 -1.2697 -2.3103 8 6 4.3329 -1.5796 -0.2606 9 7 5.0507 -1.0707 0.7182 10 14 3.7466 -3.3506 -0.1657 11 1 4.2919 -4.1148 -1.3163 12 1 4.2196 -3.9613 1.1024 13 1 2.2625 -3.3836 -0.2084 14 6 4.3804 1.4031 -2.3820 15 6 3.1613 1.7000 -3.2575 16 7 3.5652 2.5384 -4.3890 17 6 2.6497 2.9328 -5.2961 18 8 1.4897 2.5885 -5.1782 19 6 3.0557 3.7830 -6.4334 20 6 4.3908 4.1853 -6.5774 21 7 4.7724 4.9400 -7.5804 22 6 3.9168 5.3603 -8.5069 23 6 2.5555 4.9982 -8.4323 24 6 1.9009 5.6132 -9.5831 25 7 2.8091 6.2658 -10.2499 26 7 4.0523 6.1351 -9.6241 27 6 5.3041 6.7351 -10.0926 28 6 2.1163 4.1913 -7.3804 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6884 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9783 2.1766 0.0902 36 1 5.2755 -1.6154 1.4887 37 1 5.1327 0.8798 -2.9722 38 1 4.7969 2.3390 -2.0098 39 1 2.4089 2.2232 -2.6674 40 1 2.7447 0.7640 -3.6298 41 1 4.4906 2.8133 -4.4829 42 1 5.1206 3.8667 -5.8479 43 1 0.8533 5.5408 -9.8351 44 1 5.8080 6.0437 -10.7679 45 1 5.0868 7.6642 -10.6195 46 1 5.9488 6.9438 -9.2388 47 1 1.0806 3.8958 -7.3005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571641305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:50 Heat of formation + Delta-G solvation = 57.238411 kcal Electronic energy + Delta-G solvation = -29758.940756 eV Core-core repulsion = 25559.035677 eV Total energy + Delta-G solvation = -4199.905080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.95790 -39.75530 -38.00271 -37.22238 -35.77379 -34.32607 -34.14146 -32.07330 -31.48009 -30.71438 -29.33044 -27.67601 -26.98613 -25.59000 -24.52700 -24.16107 -23.44863 -21.72429 -21.31566 -20.76993 -20.17572 -18.10048 -18.02288 -16.91885 -16.74523 -16.25476 -15.91826 -15.67515 -15.22908 -15.14046 -14.87697 -14.61368 -14.44952 -14.05917 -13.97802 -13.87141 -13.57439 -13.46300 -13.39516 -13.18829 -12.90433 -12.73549 -12.53177 -11.93314 -11.78046 -11.52682 -11.18044 -10.86671 -10.81230 -10.72069 -10.66555 -10.54523 -10.27021 -10.01258 -9.96064 -9.69955 -9.64866 -9.45745 -8.90787 -8.71374 -8.56605 -8.37828 -6.61618 -5.71032 -3.24247 0.38484 0.52963 1.71172 2.02061 2.80310 3.23733 3.48391 3.53203 3.61678 3.61869 3.70017 3.87303 4.18766 4.47408 4.50615 4.61622 4.75559 4.77144 4.83012 4.92419 5.01395 5.08903 5.19849 5.38578 5.54990 5.66715 5.78200 5.79544 5.82818 5.86655 5.92741 6.03287 6.11469 6.19654 6.29837 6.31557 6.33882 6.55974 6.63943 6.66098 6.69486 6.92343 6.97764 7.44904 7.64699 7.68566 7.89799 8.14494 8.31918 8.57237 9.22216 9.88454 10.38831 11.30602 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.002071 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.971975 B =13514.041516 C =14091.367318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.137 3.863 15 C 0.095 3.905 16 N -0.717 5.717 17 C 0.564 3.436 18 O -0.541 6.541 19 C -0.227 4.227 20 C 0.205 3.795 21 N -0.505 5.505 22 C 0.327 3.673 23 C -0.239 4.239 24 C 0.096 3.904 25 N -0.242 5.242 26 N -0.394 5.394 27 C 0.110 3.890 28 C 0.071 3.929 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.253 0.747 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.395 0.605 42 H 0.171 0.829 43 H 0.206 0.794 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 15.641 -16.387 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.375 4.375 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.009 3.991 15 C -0.030 4.030 16 N -0.368 5.368 17 C 0.349 3.651 18 O -0.419 6.419 19 C -0.235 4.235 20 C 0.035 3.965 21 N -0.219 5.219 22 C 0.088 3.912 23 C -0.249 4.249 24 C -0.102 4.102 25 N -0.054 5.054 26 N -0.184 5.184 27 C -0.030 4.030 28 C 0.042 3.958 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.188 0.812 43 H 0.222 0.778 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.823 16.239 -17.358 23.839 hybrid contribution -1.203 -1.188 0.767 1.856 sum -3.026 15.051 -16.591 22.604 Atomic orbital electron populations 1.22635 0.84367 1.01430 0.98398 1.88243 1.16425 1.27374 1.94789 1.23456 0.98644 0.84347 0.96858 1.21163 0.87913 0.96551 0.93369 1.43575 1.74068 1.02383 1.08933 1.18775 1.40947 0.80700 0.97102 0.92422 1.24884 0.96782 0.97690 0.98296 1.69962 1.36084 1.36827 1.10430 0.86462 0.79512 0.84759 0.76493 1.21242 1.22038 1.20600 1.21013 0.92734 0.94860 0.90519 1.22546 1.00786 0.93697 0.85951 1.46021 1.11391 1.52725 1.26698 1.17808 0.85683 0.79881 0.81688 1.90789 1.18305 1.56925 1.75874 1.20785 0.95499 1.07039 1.00187 1.22917 0.93499 0.88210 0.91899 1.66683 1.36568 1.15401 1.03270 1.19133 0.90554 0.92257 0.89239 1.20471 0.94661 1.08629 1.01130 1.25156 0.99668 0.94282 0.91125 1.76741 0.89054 1.20237 1.19333 1.48129 1.07687 1.43419 1.19142 1.21857 0.80933 0.98811 1.01447 1.21192 1.00362 0.86882 0.87346 0.95186 0.90821 0.95645 0.95906 0.95288 0.87498 0.94084 0.93687 0.92566 0.94236 0.92131 0.91325 0.77042 0.81214 0.77763 0.90921 0.89315 0.88989 0.82728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.92 9.97 -35.23 -0.35 -8.27 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.14 3.07 5.83 -4.04 -0.02 3.04 16 5 N -0.57 -13.32 2.45 -173.24 -0.42 -13.75 16 6 C -0.25 -6.53 8.75 -15.06 -0.13 -6.66 16 7 H 0.06 1.56 7.94 -52.49 -0.42 1.14 16 8 C 0.02 0.64 4.95 -17.43 -0.09 0.55 16 9 N -0.89 -25.16 11.37 55.49 0.63 -24.53 16 10 Si 0.90 22.20 29.62 -169.99 -5.03 17.16 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.14 2.55 5.82 -4.04 -0.02 2.52 16 15 C 0.10 1.65 6.00 -4.04 -0.02 1.62 16 16 N -0.72 -9.67 5.51 -61.30 -0.34 -10.01 16 17 C 0.56 8.11 7.77 -12.40 -0.10 8.01 16 18 O -0.54 -9.83 16.40 5.30 0.09 -9.74 16 19 C -0.23 -2.63 5.89 -104.84 -0.62 -3.25 16 20 C 0.21 2.08 10.69 -17.10 -0.18 1.90 16 21 N -0.50 -5.69 10.37 -12.03 -0.12 -5.81 16 22 C 0.33 3.72 7.96 -156.09 -1.24 2.48 16 23 C -0.24 -2.49 6.36 -105.20 -0.67 -3.16 16 24 C 0.10 0.81 12.30 -15.14 -0.19 0.62 16 25 N -0.24 -2.41 12.39 31.87 0.39 -2.01 16 26 N -0.39 -3.99 4.03 -67.17 -0.27 -4.26 16 27 C 0.11 0.71 11.43 59.85 0.68 1.40 16 28 C 0.07 0.76 9.76 -38.58 -0.38 0.38 16 29 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.57 6.46 -51.93 -0.34 0.24 16 34 H 0.11 2.79 5.38 -51.93 -0.28 2.51 16 35 H 0.04 0.82 7.84 -51.93 -0.41 0.42 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 38 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 39 H 0.06 1.12 6.46 -51.93 -0.34 0.79 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.40 4.02 6.51 -40.82 -0.27 3.75 16 42 H 0.17 1.22 6.39 -52.49 -0.34 0.88 16 43 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.16 1.49 7.72 -52.48 -0.41 1.09 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -34.75 396.32 -7.63 -42.38 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.55 Total: 0.61 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -1.63 Total: 12.26 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.13 Total: -60.37 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.26 Total: -18.02 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.75 -7.63 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571641305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.621 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds