Wall clock time and date at job start Wed Apr 1 2020 05:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99605 * 2 1 4 4 C 1.52997 * 109.46783 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 65.00294 * 4 3 2 6 6 C 1.36941 * 120.00187 * 274.38946 * 5 4 3 7 7 H 1.07997 * 119.99774 * 145.90796 * 6 5 4 8 8 C 1.38813 * 119.99878 * 325.92003 * 6 5 4 9 9 N 1.31620 * 119.99744 * 335.47614 * 8 6 5 10 10 Si 1.86793 * 120.00440 * 155.47930 * 8 6 5 11 11 H 1.48503 * 109.46869 * 59.99345 * 10 8 6 12 12 H 1.48491 * 109.47457 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46870 * 300.00115 * 10 8 6 14 14 C 1.46505 * 120.00163 * 94.39704 * 5 4 3 15 15 C 1.52995 * 109.46764 * 269.99764 * 14 5 4 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 14 5 17 17 C 1.34776 * 120.00395 * 180.27788 * 16 15 14 18 18 O 1.21580 * 119.99809 * 359.71644 * 17 16 15 19 19 C 1.47687 * 120.00109 * 179.72256 * 17 16 15 20 20 C 1.40179 * 120.41026 * 359.97438 * 19 17 16 21 21 N 1.31188 * 121.37584 * 179.97438 * 20 19 17 22 22 C 1.32934 * 121.84027 * 0.02562 * 21 20 19 23 23 C 1.41057 * 120.20501 * 359.97438 * 22 21 20 24 24 C 1.45981 * 106.43395 * 180.02562 * 23 22 21 25 25 N 1.30202 * 107.58537 * 359.97438 * 24 23 22 26 26 N 1.36637 * 133.26564 * 179.97438 * 22 21 20 27 27 C 1.46504 * 125.33959 * 359.97148 * 26 22 21 28 28 C 1.39507 * 120.40649 * 179.72131 * 19 17 16 29 29 H 1.09007 * 109.47126 * 60.00453 * 1 2 3 30 30 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47492 * 300.00395 * 1 2 3 32 32 H 1.09003 * 109.46869 * 59.99790 * 3 2 1 33 33 H 1.09000 * 109.47063 * 299.99490 * 3 2 1 34 34 H 1.08997 * 109.47640 * 304.99902 * 4 3 2 35 35 H 1.08999 * 109.47087 * 184.99973 * 4 3 2 36 36 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47160 * 150.00049 * 14 5 4 38 38 H 1.08997 * 109.47175 * 29.99603 * 14 5 4 39 39 H 1.09000 * 109.47560 * 59.99647 * 15 14 5 40 40 H 1.09006 * 109.47001 * 299.99769 * 15 14 5 41 41 H 0.97000 * 119.99763 * 359.97438 * 16 15 14 42 42 H 1.07995 * 119.31180 * 0.02562 * 20 19 17 43 43 H 1.07997 * 126.20535 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47642 * 89.99439 * 27 26 22 45 45 H 1.09004 * 109.46984 * 209.99871 * 27 26 22 46 46 H 1.09002 * 109.46861 * 329.99503 * 27 26 22 47 47 H 1.08003 * 121.02694 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5641 -1.2509 6 6 4.0116 -0.8002 -1.3635 7 1 3.7892 -1.2697 -2.3103 8 6 4.3329 -1.5796 -0.2606 9 7 5.0507 -1.0707 0.7182 10 14 3.7466 -3.3506 -0.1657 11 1 4.2919 -4.1148 -1.3163 12 1 4.2196 -3.9613 1.1024 13 1 2.2625 -3.3836 -0.2084 14 6 4.3804 1.4031 -2.3820 15 6 3.1613 1.7000 -3.2575 16 7 3.5652 2.5384 -4.3890 17 6 2.6497 2.9328 -5.2961 18 8 1.4897 2.5885 -5.1782 19 6 3.0557 3.7830 -6.4334 20 6 4.3908 4.1853 -6.5774 21 7 4.7724 4.9400 -7.5804 22 6 3.9168 5.3603 -8.5069 23 6 2.5555 4.9982 -8.4323 24 6 1.9009 5.6132 -9.5831 25 7 2.8091 6.2658 -10.2499 26 7 4.0523 6.1351 -9.6241 27 6 5.3041 6.7351 -10.0926 28 6 2.1163 4.1913 -7.3804 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6884 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9783 2.1766 0.0902 36 1 5.2755 -1.6154 1.4887 37 1 5.1327 0.8798 -2.9722 38 1 4.7969 2.3390 -2.0098 39 1 2.4089 2.2232 -2.6674 40 1 2.7447 0.7640 -3.6298 41 1 4.4906 2.8133 -4.4829 42 1 5.1206 3.8667 -5.8479 43 1 0.8533 5.5408 -9.8351 44 1 5.8080 6.0437 -10.7679 45 1 5.0868 7.6642 -10.6195 46 1 5.9488 6.9438 -9.2388 47 1 1.0806 3.8958 -7.3005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571641305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:49 Heat of formation + Delta-G solvation = 33.181664 kcal Electronic energy + Delta-G solvation = -29759.983935 eV Core-core repulsion = 25559.035677 eV Total energy + Delta-G solvation = -4200.948258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.71387 -40.84874 -39.00094 -38.75005 -37.36695 -35.72640 -34.91549 -33.38365 -32.79209 -31.73879 -30.78008 -29.09050 -27.82703 -27.12874 -25.91400 -25.03515 -24.68982 -23.18058 -22.16538 -22.01421 -21.61255 -19.14145 -18.78963 -18.57300 -17.82177 -17.35249 -16.98609 -16.81022 -16.69401 -16.49581 -16.25910 -16.15918 -15.60841 -15.36251 -15.16875 -14.97312 -14.89019 -14.50062 -14.44556 -14.18442 -14.13184 -13.54974 -13.44000 -13.38689 -13.32036 -12.98537 -12.65967 -12.43117 -12.35674 -12.26208 -12.24556 -11.91167 -11.68896 -11.60838 -11.50130 -11.34474 -10.60594 -10.41279 -10.32822 -10.23367 -10.04269 -9.41736 -8.54747 -7.73039 -5.27958 -0.37502 -0.32982 1.05670 1.33606 1.48691 1.53795 1.61564 1.78446 2.09394 2.62977 2.71136 3.00763 3.16931 3.24357 3.39691 3.48256 3.61284 3.72369 3.85462 3.95984 4.22070 4.28645 4.34772 4.38119 4.41503 4.44863 4.49468 4.54332 4.61529 4.65454 4.75235 4.77261 4.83854 4.89195 4.94736 5.00228 5.09411 5.17223 5.26286 5.31753 5.51023 5.64311 5.76521 5.87653 6.26375 6.48889 6.55042 6.68275 6.69887 7.20777 7.27309 7.96655 8.42554 9.23756 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.002071 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.971975 B =13514.041516 C =14091.367318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.240 4.240 7 H 0.046 0.954 8 C -0.019 4.019 9 N -0.913 5.913 10 Si 0.940 3.060 11 H -0.280 1.280 12 H -0.296 1.296 13 H -0.288 1.288 14 C 0.140 3.860 15 C 0.119 3.881 16 N -0.705 5.705 17 C 0.568 3.432 18 O -0.583 6.583 19 C -0.240 4.240 20 C 0.213 3.787 21 N -0.516 5.516 22 C 0.311 3.689 23 C -0.251 4.251 24 C 0.109 3.891 25 N -0.262 5.262 26 N -0.400 5.400 27 C 0.103 3.897 28 C 0.076 3.924 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.248 0.752 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.414 0.586 42 H 0.198 0.802 43 H 0.244 0.756 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 17.189 -17.681 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.371 4.371 7 H 0.063 0.937 8 C -0.216 4.216 9 N -0.558 5.558 10 Si 0.770 3.230 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.215 1.215 14 C 0.013 3.987 15 C -0.008 4.008 16 N -0.357 5.357 17 C 0.356 3.644 18 O -0.464 6.464 19 C -0.248 4.248 20 C 0.042 3.958 21 N -0.231 5.231 22 C 0.071 3.929 23 C -0.261 4.261 24 C -0.089 4.089 25 N -0.073 5.073 26 N -0.189 5.189 27 C -0.037 4.037 28 C 0.048 3.952 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.251 0.749 42 H 0.214 0.786 43 H 0.260 0.740 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.115 0.885 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.023 17.830 -18.702 25.918 hybrid contribution -1.170 -1.573 1.059 2.228 sum -3.192 16.256 -17.643 24.202 Atomic orbital electron populations 1.22785 0.82086 1.02320 0.99856 1.88166 1.19103 1.28720 1.95124 1.23332 0.97142 0.83965 0.98152 1.21119 0.89547 0.96737 0.91840 1.43725 1.74612 1.01926 1.10359 1.18831 1.39286 0.82529 0.96412 0.93650 1.25335 0.97655 1.00040 0.98569 1.70057 1.37531 1.37448 1.10759 0.85782 0.78454 0.82394 0.76368 1.20617 1.22258 1.21451 1.21077 0.93077 0.95237 0.89307 1.21971 0.99615 0.92704 0.86500 1.45754 1.12428 1.51970 1.25597 1.18135 0.84958 0.79368 0.81945 1.90767 1.20102 1.58629 1.76927 1.20531 0.96532 1.07949 0.99774 1.23276 0.93343 0.87241 0.91919 1.66758 1.36702 1.15980 1.03649 1.19482 0.91190 0.92542 0.89681 1.20665 0.94767 1.08955 1.01762 1.25810 1.01027 0.92477 0.89605 1.76745 0.89356 1.21197 1.20000 1.48483 1.08583 1.43079 1.18767 1.22100 0.79997 0.99613 1.01957 1.21316 1.00626 0.86254 0.87039 0.94422 0.90344 0.93333 0.93661 0.94642 0.90989 0.91841 0.94286 0.92581 0.91515 0.93176 0.94513 0.74853 0.78591 0.74024 0.90024 0.87770 0.88545 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.55 9.97 -148.98 -1.48 -19.04 16 3 C 0.05 2.09 6.28 71.98 0.45 2.54 16 4 C 0.13 5.93 5.83 86.38 0.50 6.43 16 5 N -0.59 -27.16 2.45 -702.02 -1.72 -28.88 16 6 C -0.24 -12.84 8.75 84.03 0.74 -12.10 16 7 H 0.05 2.49 7.94 -2.91 -0.02 2.47 16 8 C -0.02 -1.04 4.95 84.86 0.42 -0.62 16 9 N -0.91 -52.30 11.37 21.65 0.25 -52.05 16 10 Si 0.94 46.11 29.62 68.60 2.03 48.14 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 14 C 0.14 5.02 5.82 86.38 0.50 5.53 16 15 C 0.12 4.01 6.00 86.38 0.52 4.53 16 16 N -0.71 -18.00 5.51 -466.12 -2.57 -20.57 16 17 C 0.57 15.81 7.77 86.74 0.67 16.49 16 18 O -0.58 -21.10 16.40 -3.97 -0.07 -21.17 16 19 C -0.24 -5.23 5.89 -20.00 -0.12 -5.34 16 20 C 0.21 3.91 10.69 85.26 0.91 4.82 16 21 N -0.52 -10.77 10.37 -191.97 -1.99 -12.76 16 22 C 0.31 6.60 7.96 134.17 1.07 7.67 16 23 C -0.25 -4.82 6.36 -20.24 -0.13 -4.95 16 24 C 0.11 1.58 12.30 86.94 1.07 2.64 16 25 N -0.26 -4.71 12.39 -53.07 -0.66 -5.37 16 26 N -0.40 -7.46 4.03 -366.43 -1.48 -8.94 16 27 C 0.10 1.17 11.43 127.77 1.46 2.63 16 28 C 0.08 1.53 9.76 22.92 0.22 1.76 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.19 16 30 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.35 6.46 -2.39 -0.02 1.34 16 34 H 0.07 3.79 5.38 -2.39 -0.01 3.78 16 35 H 0.06 2.45 7.84 -2.39 -0.02 2.43 16 36 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 38 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 39 H 0.05 1.82 6.46 -2.39 -0.02 1.80 16 40 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.41 7.42 6.51 -92.71 -0.60 6.82 16 42 H 0.20 2.29 6.39 -2.91 -0.02 2.27 16 43 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.16 2.94 7.72 -2.91 -0.02 2.92 16 Total: -1.00 -75.83 396.32 2.26 -73.58 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.40 Total: 12.90 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 9.54 Total: 34.16 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -8.17 Total: -128.57 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.55 Total: -40.21 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -75.83 2.26 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571641305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.759 kcal (2) G-P(sol) polarization free energy of solvation -75.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds