Wall clock time and date at job start Wed Apr 1 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99960 * 2 1 4 4 C 1.52996 * 109.47257 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47018 * 67.02666 * 4 3 2 6 6 C 1.46899 * 110.99716 * 289.90602 * 5 4 3 7 7 C 1.50696 * 109.47486 * 299.64801 * 6 5 4 8 8 H 1.07995 * 120.00455 * 354.88133 * 7 6 5 9 9 C 1.37885 * 119.99895 * 174.88818 * 7 6 5 10 10 N 1.31518 * 119.99885 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99776 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47195 * 59.99911 * 11 9 7 13 13 H 1.48502 * 109.46862 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47311 * 299.99694 * 11 9 7 15 15 C 1.46898 * 110.99978 * 53.86585 * 5 4 3 16 16 C 1.52997 * 109.47023 * 66.04818 * 15 5 4 17 17 H 1.09003 * 109.47126 * 304.99244 * 16 15 5 18 18 O 1.42892 * 109.47603 * 65.00156 * 16 15 5 19 19 C 1.50700 * 109.46621 * 185.00012 * 16 15 5 20 20 C 1.38336 * 119.94101 * 279.99339 * 19 16 15 21 21 C 1.38299 * 120.23864 * 180.02562 * 20 19 16 22 22 C 1.38049 * 120.11579 * 0.02594 * 21 20 19 23 23 C 1.39281 * 119.88063 * 359.97438 * 22 21 20 24 24 C 1.48462 * 120.11818 * 179.97438 * 23 22 21 25 25 N 1.34049 * 126.67855 * 179.68717 * 24 23 22 26 26 N 1.28981 * 107.26983 * 179.83159 * 25 24 23 27 27 N 1.28727 * 108.94749 * 0.43119 * 26 25 24 28 28 H 0.97002 * 125.35007 * 179.72381 * 27 26 25 29 29 N 1.28879 * 109.31662 * 359.72601 * 27 26 25 30 30 C 1.38014 * 119.94271 * 100.01994 * 19 16 15 31 31 H 1.08999 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47378 * 299.99980 * 1 2 3 33 33 H 1.09000 * 109.47219 * 60.00239 * 1 2 3 34 34 H 1.09002 * 109.46998 * 59.99703 * 3 2 1 35 35 H 1.08995 * 109.47029 * 299.99963 * 3 2 1 36 36 H 1.09007 * 109.47347 * 307.02464 * 4 3 2 37 37 H 1.09003 * 109.47276 * 187.02976 * 4 3 2 38 38 H 1.09000 * 109.46689 * 59.65140 * 6 5 4 39 39 H 1.09009 * 109.46754 * 179.64438 * 6 5 4 40 40 H 0.96997 * 119.99858 * 180.02562 * 10 9 7 41 41 H 1.08997 * 109.47087 * 306.04110 * 15 5 4 42 42 H 1.09006 * 109.46790 * 186.04842 * 15 5 4 43 43 H 0.96699 * 114.00531 * 59.99209 * 18 16 15 44 44 H 1.07995 * 119.88320 * 0.05152 * 20 19 16 45 45 H 1.08002 * 119.94341 * 180.02562 * 21 20 19 46 46 H 1.08000 * 120.06048 * 179.70317 * 22 21 20 47 47 H 1.08001 * 120.05865 * 0.02562 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9814 0.6069 -1.2742 6 6 3.6037 -0.8094 -1.3710 7 6 4.2489 -1.5794 -0.2477 8 1 4.9418 -1.0855 0.4173 9 6 3.9547 -2.9146 -0.0691 10 7 3.1106 -3.5160 -0.8787 11 14 4.7551 -3.8691 1.3229 12 1 4.3953 -3.2456 2.6217 13 1 4.2754 -5.2744 1.2992 14 1 6.2303 -3.8463 1.1546 15 6 3.4536 1.3716 -2.4120 16 6 4.0673 2.7731 -2.4131 17 1 3.8879 3.2491 -1.4490 18 8 5.4744 2.6769 -2.6425 19 6 3.4354 3.5971 -3.5053 20 6 3.8574 3.4484 -4.8143 21 6 3.2822 4.2019 -5.8213 22 6 2.2834 5.1074 -5.5246 23 6 1.8548 5.2611 -4.2083 24 6 0.7814 6.2338 -3.8831 25 7 0.2669 6.4828 -2.6706 26 7 -0.6359 7.3923 -2.8171 27 7 -0.7103 7.7107 -4.0622 28 1 -1.3151 8.3695 -4.4379 29 7 0.1450 7.0167 -4.7315 30 6 2.4372 4.4992 -3.1977 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8899 36 1 3.8485 0.5392 0.8214 37 1 3.9781 2.1728 0.1264 38 1 2.5200 -0.9020 -1.2995 39 1 3.9403 -1.2106 -2.3270 40 1 2.9034 -4.4551 -0.7528 41 1 2.3698 1.4495 -2.3260 42 1 3.7086 0.8625 -3.3415 43 1 5.7083 2.2623 -3.4842 44 1 4.6385 2.7411 -5.0508 45 1 3.6150 4.0816 -6.8417 46 1 1.8382 5.6988 -6.3110 47 1 2.1091 4.6152 -2.1753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579792392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:33 Heat of formation + Delta-G solvation = 75.506147 kcal Electronic energy + Delta-G solvation = -30728.259615 eV Core-core repulsion = 26529.146684 eV Total energy + Delta-G solvation = -4199.112931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.73750 -39.92070 -38.25579 -36.82686 -35.20949 -34.65786 -33.79675 -32.43714 -31.71941 -30.74653 -29.05606 -28.30936 -26.00673 -25.47950 -24.87402 -24.74730 -23.25988 -22.47404 -22.16432 -20.71769 -19.51327 -19.38629 -17.53264 -17.42516 -16.41814 -16.18684 -16.01982 -15.82216 -15.54216 -15.30344 -14.76764 -14.45612 -14.26693 -14.06131 -13.96422 -13.73181 -13.68550 -13.17944 -12.89859 -12.63532 -12.25907 -11.96000 -11.87742 -11.69624 -11.61942 -11.47173 -11.42756 -11.27300 -11.10451 -11.09308 -10.96068 -10.70961 -10.63511 -10.52596 -10.10974 -9.93684 -9.62628 -9.07836 -8.96180 -8.90792 -8.73235 -8.22426 -6.96544 -5.82770 -3.80009 0.46241 0.92143 1.16073 1.93101 2.11116 3.39170 3.44840 3.47727 3.51294 3.57639 3.90451 4.41266 4.53358 4.62500 4.70413 4.72029 4.84992 4.92382 5.12960 5.18295 5.24074 5.31349 5.41059 5.53676 5.55977 5.61593 5.66503 5.73475 5.77272 5.80748 5.89345 5.97210 6.03049 6.14944 6.18257 6.20522 6.21777 6.26628 6.33918 6.50854 6.67261 6.86586 7.42509 7.80934 7.85382 7.88833 7.92722 7.96872 8.22598 8.39342 8.74947 9.25528 9.80783 11.28688 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.002673 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.067329 B =10473.512314 C =11556.635447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.020 3.980 4 C 0.059 3.941 5 N -0.521 5.521 6 C 0.183 3.817 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.058 3.942 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.024 3.976 16 C 0.150 3.850 17 H 0.106 0.894 18 O -0.539 6.539 19 C -0.108 4.108 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.084 4.084 23 C -0.022 4.022 24 C 0.225 3.775 25 N -0.266 5.266 26 N -0.049 5.049 27 N -0.230 5.230 28 H 0.475 0.525 29 N -0.297 5.297 30 C -0.066 4.066 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.015 0.985 40 H 0.257 0.743 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.369 0.631 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 21.769 -10.263 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.058 4.058 4 C -0.070 4.070 5 N -0.244 5.244 6 C 0.058 3.942 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.539 5.539 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.205 1.205 15 C -0.105 4.105 16 C 0.091 3.909 17 H 0.124 0.876 18 O -0.343 6.343 19 C -0.109 4.109 20 C -0.106 4.106 21 C -0.137 4.137 22 C -0.104 4.104 23 C -0.026 4.026 24 C -0.055 4.055 25 N -0.139 5.139 26 N -0.044 5.044 27 N -0.075 5.075 28 H 0.329 0.671 29 N -0.148 5.148 30 C -0.086 4.086 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.216 0.784 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.573 22.039 -9.312 24.812 hybrid contribution -1.148 -0.414 -0.376 1.277 sum -7.721 21.625 -9.688 24.922 Atomic orbital electron populations 1.22671 0.83743 1.02194 0.98308 1.88476 1.17305 1.25685 1.94593 1.23392 0.97650 0.86088 0.98716 1.22257 0.89181 0.99767 0.95748 1.62281 1.57866 1.05289 0.98973 1.20024 0.97179 0.80260 0.96692 1.21013 1.24660 0.94193 1.13163 0.92454 1.24871 0.95387 0.97708 0.96257 1.69951 1.35017 1.10960 1.37973 0.86689 0.79625 0.78794 0.82965 1.20499 1.21667 1.20461 1.22777 0.97358 0.93324 0.97033 1.20905 0.81041 0.93768 0.95227 0.87647 1.86639 1.21087 1.83286 1.43309 1.20715 0.96851 0.97316 0.96024 1.21146 0.99042 0.98318 0.92097 1.21047 0.96631 0.96346 0.99653 1.21118 0.96550 0.97978 0.94774 1.17176 0.94738 0.96150 0.94501 1.23737 0.98465 0.97649 0.85641 1.76128 1.06112 1.09626 1.22044 1.78931 1.14698 1.09921 1.00878 1.47730 1.26477 1.29075 1.04248 0.67101 1.74917 1.05767 1.09192 1.24963 1.21005 0.94668 0.93698 0.99268 0.90021 0.95287 0.95374 0.94505 0.94155 0.88518 0.91358 0.94538 0.96725 0.93360 0.94335 0.91124 0.78360 0.85292 0.85094 0.85137 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.32 7.58 -35.23 -0.27 -7.58 16 3 C 0.02 0.36 5.69 37.16 0.21 0.57 16 4 C 0.06 1.14 5.37 -3.83 -0.02 1.12 16 5 N -0.52 -10.91 4.70 -236.07 -1.11 -12.01 16 6 C 0.18 4.72 4.30 -4.98 -0.02 4.70 16 7 C -0.49 -13.88 8.21 -34.44 -0.28 -14.17 16 8 H 0.06 1.62 6.99 -52.49 -0.37 1.25 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 11 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.02 0.41 4.22 -3.83 -0.02 0.39 16 16 C 0.15 2.10 3.16 -27.89 -0.09 2.01 16 17 H 0.11 1.50 6.32 -51.93 -0.33 1.17 16 18 O -0.54 -7.87 13.14 -35.23 -0.46 -8.33 16 19 C -0.11 -1.29 4.97 -104.67 -0.52 -1.81 16 20 C -0.09 -0.89 9.31 -39.52 -0.37 -1.25 16 21 C -0.12 -1.06 10.03 -39.63 -0.40 -1.46 16 22 C -0.08 -0.81 9.70 -39.26 -0.38 -1.19 16 23 C -0.02 -0.25 5.88 -104.89 -0.62 -0.87 16 24 C 0.22 2.59 7.94 -156.30 -1.24 1.35 16 25 N -0.27 -3.29 12.23 32.16 0.39 -2.90 16 26 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 27 N -0.23 -1.63 7.90 60.35 0.48 -1.15 16 28 H 0.47 0.96 8.96 -340.36 -3.05 -2.09 16 29 N -0.30 -2.83 12.08 32.17 0.39 -2.44 16 30 C -0.07 -0.79 9.32 -39.26 -0.37 -1.15 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.67 5.80 -51.93 -0.30 0.37 16 36 H 0.10 2.12 6.33 -51.93 -0.33 1.79 16 37 H 0.07 1.14 6.67 -51.93 -0.35 0.79 16 38 H 0.04 1.02 5.29 -51.93 -0.27 0.75 16 39 H 0.01 0.41 8.05 -51.92 -0.42 -0.01 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.04 0.67 5.71 -51.93 -0.30 0.38 16 42 H 0.07 1.19 8.01 -51.93 -0.42 0.78 16 43 H 0.37 4.22 7.50 45.56 0.34 4.57 16 44 H 0.13 1.08 6.78 -52.49 -0.36 0.73 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 1.05 7.88 -52.49 -0.41 0.64 16 47 H 0.14 1.60 7.86 -52.49 -0.41 1.18 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -35.28 386.88 -9.53 -44.81 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.22 Total: 1.16 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.09 Total: -8.60 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 1.70 Total: -44.49 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.73 Total: -15.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.28 -9.53 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579792392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.316 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds