Wall clock time and date at job start Wed Apr 1 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99960 * 2 1 4 4 C 1.52996 * 109.47257 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47018 * 67.02666 * 4 3 2 6 6 C 1.46899 * 110.99716 * 289.90602 * 5 4 3 7 7 C 1.50696 * 109.47486 * 299.64801 * 6 5 4 8 8 H 1.07995 * 120.00455 * 354.88133 * 7 6 5 9 9 C 1.37885 * 119.99895 * 174.88818 * 7 6 5 10 10 N 1.31518 * 119.99885 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99776 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47195 * 59.99911 * 11 9 7 13 13 H 1.48502 * 109.46862 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47311 * 299.99694 * 11 9 7 15 15 C 1.46898 * 110.99978 * 53.86585 * 5 4 3 16 16 C 1.52997 * 109.47023 * 66.04818 * 15 5 4 17 17 H 1.09003 * 109.47126 * 304.99244 * 16 15 5 18 18 O 1.42892 * 109.47603 * 65.00156 * 16 15 5 19 19 C 1.50700 * 109.46621 * 185.00012 * 16 15 5 20 20 C 1.38336 * 119.94101 * 279.99339 * 19 16 15 21 21 C 1.38299 * 120.23864 * 180.02562 * 20 19 16 22 22 C 1.38049 * 120.11579 * 0.02594 * 21 20 19 23 23 C 1.39281 * 119.88063 * 359.97438 * 22 21 20 24 24 C 1.48462 * 120.11818 * 179.97438 * 23 22 21 25 25 N 1.34049 * 126.67855 * 179.68717 * 24 23 22 26 26 N 1.28981 * 107.26983 * 179.83159 * 25 24 23 27 27 N 1.28727 * 108.94749 * 0.43119 * 26 25 24 28 28 H 0.97002 * 125.35007 * 179.72381 * 27 26 25 29 29 N 1.28879 * 109.31662 * 359.72601 * 27 26 25 30 30 C 1.38014 * 119.94271 * 100.01994 * 19 16 15 31 31 H 1.08999 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47378 * 299.99980 * 1 2 3 33 33 H 1.09000 * 109.47219 * 60.00239 * 1 2 3 34 34 H 1.09002 * 109.46998 * 59.99703 * 3 2 1 35 35 H 1.08995 * 109.47029 * 299.99963 * 3 2 1 36 36 H 1.09007 * 109.47347 * 307.02464 * 4 3 2 37 37 H 1.09003 * 109.47276 * 187.02976 * 4 3 2 38 38 H 1.09000 * 109.46689 * 59.65140 * 6 5 4 39 39 H 1.09009 * 109.46754 * 179.64438 * 6 5 4 40 40 H 0.96997 * 119.99858 * 180.02562 * 10 9 7 41 41 H 1.08997 * 109.47087 * 306.04110 * 15 5 4 42 42 H 1.09006 * 109.46790 * 186.04842 * 15 5 4 43 43 H 0.96699 * 114.00531 * 59.99209 * 18 16 15 44 44 H 1.07995 * 119.88320 * 0.05152 * 20 19 16 45 45 H 1.08002 * 119.94341 * 180.02562 * 21 20 19 46 46 H 1.08000 * 120.06048 * 179.70317 * 22 21 20 47 47 H 1.08001 * 120.05865 * 0.02562 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9814 0.6069 -1.2742 6 6 3.6037 -0.8094 -1.3710 7 6 4.2489 -1.5794 -0.2477 8 1 4.9418 -1.0855 0.4173 9 6 3.9547 -2.9146 -0.0691 10 7 3.1106 -3.5160 -0.8787 11 14 4.7551 -3.8691 1.3229 12 1 4.3953 -3.2456 2.6217 13 1 4.2754 -5.2744 1.2992 14 1 6.2303 -3.8463 1.1546 15 6 3.4536 1.3716 -2.4120 16 6 4.0673 2.7731 -2.4131 17 1 3.8879 3.2491 -1.4490 18 8 5.4744 2.6769 -2.6425 19 6 3.4354 3.5971 -3.5053 20 6 3.8574 3.4484 -4.8143 21 6 3.2822 4.2019 -5.8213 22 6 2.2834 5.1074 -5.5246 23 6 1.8548 5.2611 -4.2083 24 6 0.7814 6.2338 -3.8831 25 7 0.2669 6.4828 -2.6706 26 7 -0.6359 7.3923 -2.8171 27 7 -0.7103 7.7107 -4.0622 28 1 -1.3151 8.3695 -4.4379 29 7 0.1450 7.0167 -4.7315 30 6 2.4372 4.4992 -3.1977 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8899 36 1 3.8485 0.5392 0.8214 37 1 3.9781 2.1728 0.1264 38 1 2.5200 -0.9020 -1.2995 39 1 3.9403 -1.2106 -2.3270 40 1 2.9034 -4.4551 -0.7528 41 1 2.3698 1.4495 -2.3260 42 1 3.7086 0.8625 -3.3415 43 1 5.7083 2.2623 -3.4842 44 1 4.6385 2.7411 -5.0508 45 1 3.6150 4.0816 -6.8417 46 1 1.8382 5.6988 -6.3110 47 1 2.1091 4.6152 -2.1753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579792392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:32 Heat of formation + Delta-G solvation = 47.712228 kcal Electronic energy + Delta-G solvation = -30729.464850 eV Core-core repulsion = 26529.146684 eV Total energy + Delta-G solvation = -4200.318166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.48634 -40.88431 -39.63793 -38.05753 -36.72240 -35.42865 -34.58381 -34.51715 -32.69017 -31.53898 -30.60852 -29.86410 -27.51088 -26.97032 -25.80293 -25.53634 -24.59196 -24.07777 -23.06996 -21.76388 -20.96563 -20.17729 -18.52185 -18.29177 -18.16691 -17.63563 -17.42505 -16.84169 -16.70747 -16.51294 -16.30846 -15.77230 -15.67254 -15.41543 -15.06179 -14.91003 -14.57385 -14.35086 -14.08347 -13.93940 -13.53821 -13.40158 -13.17028 -12.93168 -12.82345 -12.67790 -12.56815 -12.52537 -12.44938 -12.39534 -12.28889 -12.19938 -12.00823 -11.90669 -11.79876 -11.54372 -11.25591 -10.79398 -10.54671 -10.26796 -9.81293 -9.62612 -8.67608 -8.03161 -6.07270 -0.30599 0.15606 0.35436 1.29783 1.40357 1.44048 1.46934 1.53616 2.49700 2.62976 2.76145 3.02845 3.12262 3.30863 3.36984 3.66013 3.89794 3.90358 4.06020 4.13872 4.19201 4.19630 4.29354 4.34668 4.40316 4.42639 4.48605 4.53265 4.58630 4.60223 4.73988 4.83419 4.83941 4.91832 4.98447 5.03821 5.21050 5.39407 5.44130 5.49198 5.58114 5.60187 5.75163 5.82432 5.90568 6.24914 6.44705 6.48201 6.80799 6.94436 7.08595 7.08969 7.57950 9.07796 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.002673 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.067329 B =10473.512314 C =11556.635447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.023 3.977 4 C 0.060 3.940 5 N -0.530 5.530 6 C 0.200 3.800 7 C -0.501 4.501 8 H 0.052 0.948 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.030 3.970 16 C 0.166 3.834 17 H 0.102 0.898 18 O -0.553 6.553 19 C -0.120 4.120 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.080 4.080 23 C -0.034 4.034 24 C 0.211 3.789 25 N -0.298 5.298 26 N -0.058 5.058 27 N -0.200 5.200 28 H 0.495 0.505 29 N -0.292 5.292 30 C -0.076 4.076 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.018 0.982 39 H -0.017 1.017 40 H 0.257 0.743 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.382 0.618 44 H 0.145 0.855 45 H 0.162 0.838 46 H 0.148 0.852 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 23.571 -11.139 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C -0.055 4.055 4 C -0.068 4.068 5 N -0.252 5.252 6 C 0.074 3.926 7 C -0.540 4.540 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.573 5.573 11 Si 0.781 3.219 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.099 4.099 16 C 0.106 3.894 17 H 0.120 0.880 18 O -0.360 6.360 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.100 4.100 23 C -0.038 4.038 24 C -0.068 4.068 25 N -0.170 5.170 26 N -0.053 5.053 27 N -0.051 5.051 28 H 0.354 0.646 29 N -0.145 5.145 30 C -0.097 4.097 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.036 0.964 39 H 0.001 0.999 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.231 0.769 44 H 0.163 0.837 45 H 0.180 0.820 46 H 0.166 0.834 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.682 23.881 -10.190 26.811 hybrid contribution -1.183 -0.845 -0.206 1.468 sum -7.865 23.037 -10.396 26.469 Atomic orbital electron populations 1.22766 0.81884 1.02248 1.00101 1.88386 1.19571 1.27749 1.94949 1.23400 0.96393 0.85245 1.00416 1.22240 0.90636 1.00179 0.93763 1.62139 1.58625 1.03419 1.01061 1.19614 0.95617 0.83149 0.94218 1.21305 1.24396 0.94724 1.13540 0.92992 1.25672 0.95991 0.98775 0.98673 1.70080 1.36381 1.11186 1.39653 0.85671 0.78891 0.77369 0.79999 1.19911 1.21224 1.19677 1.22807 0.97226 0.94658 0.95190 1.20621 0.80721 0.91830 0.96179 0.88013 1.86601 1.21364 1.83483 1.44522 1.20469 0.97590 0.97849 0.96162 1.21414 0.99322 0.98661 0.91607 1.21388 0.95694 0.95130 1.00778 1.21389 0.96279 0.97848 0.94444 1.17310 0.95019 0.96317 0.95105 1.23836 0.98997 0.98284 0.85713 1.76106 1.07154 1.10758 1.22987 1.78867 1.14618 1.09929 1.01857 1.47797 1.25573 1.28257 1.03444 0.64613 1.74873 1.05845 1.09031 1.24731 1.20981 0.95038 0.94275 0.99379 0.90940 0.92895 0.94029 0.92146 0.92840 0.91603 0.88506 0.96417 0.99881 0.93394 0.94729 0.91508 0.76873 0.83700 0.82015 0.83398 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -16.77 7.58 -148.98 -1.13 -17.90 16 3 C 0.02 0.83 5.69 71.98 0.41 1.24 16 4 C 0.06 2.33 5.37 86.30 0.46 2.79 16 5 N -0.53 -22.57 4.70 -900.79 -4.23 -26.79 16 6 C 0.20 10.69 4.30 85.56 0.37 11.05 16 7 C -0.50 -29.03 8.21 25.60 0.21 -28.82 16 8 H 0.05 3.00 6.99 -2.91 -0.02 2.98 16 9 C 0.01 0.35 5.46 84.66 0.46 0.82 16 10 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 11 Si 0.95 46.17 29.54 68.60 2.03 48.19 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 15 C 0.03 1.01 4.22 86.30 0.36 1.38 16 16 C 0.17 4.54 3.16 29.85 0.09 4.63 16 17 H 0.10 2.83 6.32 -2.39 -0.02 2.81 16 18 O -0.55 -15.66 13.14 -148.98 -1.96 -17.62 16 19 C -0.12 -2.74 4.97 -19.89 -0.10 -2.84 16 20 C -0.09 -1.68 9.31 22.31 0.21 -1.47 16 21 C -0.11 -1.68 10.03 22.24 0.22 -1.46 16 22 C -0.08 -1.34 9.70 22.48 0.22 -1.12 16 23 C -0.03 -0.73 5.88 -20.04 -0.12 -0.85 16 24 C 0.21 4.62 7.94 137.38 1.09 5.71 16 25 N -0.30 -7.18 12.23 -52.18 -0.64 -7.82 16 26 N -0.06 -1.11 13.47 37.02 0.50 -0.61 16 27 N -0.20 -2.46 7.90 37.02 0.29 -2.16 16 28 H 0.49 0.85 8.96 -347.53 -3.12 -2.26 16 29 N -0.29 -5.01 12.08 -52.12 -0.63 -5.64 16 30 C -0.08 -1.77 9.32 22.48 0.21 -1.56 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.75 5.80 -2.39 -0.01 1.73 16 36 H 0.07 2.95 6.33 -2.38 -0.02 2.94 16 37 H 0.10 3.15 6.67 -2.39 -0.02 3.13 16 38 H 0.02 1.05 5.29 -2.39 -0.01 1.04 16 39 H -0.02 -0.99 8.05 -2.38 -0.02 -1.01 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.03 1.22 5.71 -2.39 -0.01 1.20 16 42 H 0.07 2.29 8.01 -2.38 -0.02 2.27 16 43 H 0.38 8.33 7.50 -74.06 -0.56 7.77 16 44 H 0.15 2.11 6.78 -2.91 -0.02 2.09 16 45 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 46 H 0.15 1.94 7.88 -2.91 -0.02 1.91 16 47 H 0.13 3.05 7.86 -2.91 -0.02 3.03 16 Total: -1.00 -77.66 386.88 -2.76 -80.43 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -2.63 Total: 15.34 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.35 Total: -8.36 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -4.42 Total: -100.09 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -3.09 Total: -35.52 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -77.66 -2.76 -80.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579792392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.138 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds