Wall clock time and date at job start Wed Apr 1 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99992 * 2 1 4 4 C 1.52998 * 109.46986 * 66.04754 * 3 2 1 5 5 O 1.42902 * 109.47038 * 64.99965 * 4 3 2 6 6 C 1.42905 * 113.99993 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46990 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00151 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99647 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00165 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99783 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47137 * 90.00121 * 11 9 7 13 13 H 1.48500 * 109.46722 * 210.00440 * 11 9 7 14 14 H 1.48501 * 109.46893 * 330.00080 * 11 9 7 15 15 C 1.46903 * 111.00097 * 236.05214 * 2 1 3 16 16 C 1.53002 * 109.47047 * 199.99572 * 15 2 1 17 17 H 1.08992 * 109.46915 * 300.55581 * 16 15 2 18 18 O 1.42901 * 109.47050 * 60.55549 * 16 15 2 19 19 C 1.50703 * 109.47062 * 180.55000 * 16 15 2 20 20 C 1.38331 * 119.94346 * 280.00152 * 19 16 15 21 21 C 1.38297 * 120.23893 * 180.02562 * 20 19 16 22 22 C 1.38051 * 120.11324 * 0.02562 * 21 20 19 23 23 C 1.39277 * 119.88393 * 359.97438 * 22 21 20 24 24 C 1.48459 * 120.11948 * 179.97438 * 23 22 21 25 25 N 1.34050 * 126.67696 * 179.68361 * 24 23 22 26 26 N 1.28982 * 107.26560 * 179.83661 * 25 24 23 27 27 N 1.28723 * 108.94760 * 0.43950 * 26 25 24 28 28 H 0.97006 * 125.34131 * 179.71945 * 27 26 25 29 29 N 1.28867 * 109.31896 * 359.71754 * 27 26 25 30 30 C 1.38004 * 119.93899 * 100.02029 * 19 16 15 31 31 H 1.08997 * 109.46713 * 188.27477 * 1 2 3 32 32 H 1.09004 * 109.47056 * 308.27187 * 1 2 3 33 33 H 1.08999 * 109.47276 * 68.27421 * 1 2 3 34 34 H 1.09001 * 109.47305 * 186.05085 * 3 2 1 35 35 H 1.08998 * 109.46908 * 306.04987 * 3 2 1 36 36 H 1.08997 * 109.47307 * 185.00078 * 4 3 2 37 37 H 1.09004 * 109.46874 * 305.00427 * 4 3 2 38 38 H 1.09004 * 109.46901 * 300.00476 * 6 5 4 39 39 H 1.09004 * 109.46646 * 59.99863 * 6 5 4 40 40 H 0.96996 * 120.00046 * 180.02562 * 10 9 7 41 41 H 1.09000 * 109.47144 * 79.99476 * 15 2 1 42 42 H 1.08998 * 109.46777 * 319.99347 * 15 2 1 43 43 H 0.96700 * 114.00532 * 59.99435 * 18 16 15 44 44 H 1.08001 * 119.88342 * 0.04617 * 20 19 16 45 45 H 1.07997 * 119.94100 * 180.02562 * 21 20 19 46 46 H 1.08005 * 120.05374 * 179.70068 * 22 21 20 47 47 H 1.08006 * 120.05819 * 0.02562 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 8 2.2956 1.3975 2.3979 6 6 2.0214 1.9627 3.6814 7 6 2.7697 1.1933 4.7393 8 1 3.3928 0.3568 4.4594 9 6 2.6598 1.5582 6.0644 10 7 1.9015 2.5772 6.4051 11 14 3.5879 0.6050 7.3757 12 1 4.9269 1.2148 7.5764 13 1 2.8278 0.6487 8.6506 14 1 3.7468 -0.8065 6.9423 15 6 1.9955 -0.7659 -1.1377 16 6 3.4438 -1.1696 -0.8542 17 1 4.0464 -0.2750 -0.6979 18 8 3.4900 -1.9858 0.3179 19 6 3.9882 -1.9437 -2.0270 20 6 3.6789 -3.2841 -2.1731 21 6 4.1757 -4.0004 -3.2468 22 6 4.9839 -3.3805 -4.1786 23 6 5.2985 -2.0312 -4.0362 24 6 6.1677 -1.3595 -5.0349 25 7 6.5472 -0.0739 -5.0301 26 7 7.2979 0.1075 -6.0632 27 7 7.3929 -1.0010 -6.7106 28 1 7.8981 -1.1316 -7.5284 29 7 6.7117 -1.9099 -6.1020 30 6 4.7948 -1.3142 -2.9531 31 1 -0.3632 -1.0170 0.1479 32 1 -0.3633 0.6366 0.8068 33 1 -0.3634 0.3804 -0.9546 34 1 3.0797 1.3445 -0.1083 35 1 1.5610 1.9274 -0.8309 36 1 1.9438 3.1011 1.2832 37 1 0.5532 2.0057 1.4691 38 1 2.3415 3.0046 3.6955 39 1 0.9512 1.9087 3.8810 40 1 1.8244 2.8341 7.3373 41 1 1.9590 -0.1515 -2.0373 42 1 1.3908 -1.6608 -1.2841 43 1 2.9745 -2.8011 0.2501 44 1 3.0470 -3.7729 -1.4464 45 1 3.9308 -5.0465 -3.3564 46 1 5.3753 -3.9421 -5.0141 47 1 5.0362 -0.2678 -2.8376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591109376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:10 Heat of formation + Delta-G solvation = 64.876307 kcal Electronic energy + Delta-G solvation = -29467.017010 eV Core-core repulsion = 25267.443135 eV Total energy + Delta-G solvation = -4199.573876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.81982 -40.05403 -38.15629 -36.69223 -35.49742 -34.74357 -33.89065 -32.58896 -31.98043 -30.87664 -29.61947 -28.40967 -26.76926 -25.42766 -24.85746 -24.70721 -22.95038 -22.43393 -22.13725 -20.97608 -20.32906 -19.54986 -17.71675 -17.50518 -16.35848 -16.32811 -16.06886 -15.83224 -15.66510 -15.31887 -14.98863 -14.62177 -14.45621 -14.17009 -13.96531 -13.82350 -13.62154 -13.34073 -13.06817 -12.83020 -12.72182 -12.15944 -12.09802 -11.84304 -11.73503 -11.68308 -11.65124 -11.57161 -11.46444 -11.32348 -11.14220 -10.84840 -10.71784 -10.55992 -10.31258 -10.01439 -9.84246 -9.15328 -8.96771 -8.94852 -8.66375 -8.03530 -7.96656 -5.98911 -3.98729 0.34976 0.83294 1.01271 1.85526 2.00243 3.29451 3.39462 3.42207 3.43780 3.50970 3.79649 3.95997 4.46323 4.50113 4.56642 4.65942 4.71840 4.83111 4.90588 4.99926 5.04560 5.09054 5.13600 5.26612 5.37625 5.39958 5.47253 5.49170 5.56345 5.63847 5.74903 5.79461 5.82412 5.94990 6.00343 6.06030 6.08011 6.12975 6.23553 6.29940 6.39663 6.53223 7.21773 7.23701 7.28704 7.56756 7.77482 7.83344 7.94618 8.30715 8.76524 9.17374 9.65670 11.12906 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002024 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.111999 B =13833.263114 C =13984.964947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.517 5.517 3 C 0.059 3.941 4 C 0.066 3.934 5 O -0.374 6.374 6 C 0.194 3.806 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.030 3.970 16 C 0.154 3.846 17 H 0.110 0.890 18 O -0.525 6.525 19 C -0.112 4.112 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.082 4.082 23 C -0.020 4.020 24 C 0.222 3.778 25 N -0.265 5.265 26 N -0.048 5.048 27 N -0.229 5.229 28 H 0.475 0.525 29 N -0.296 5.296 30 C -0.064 4.064 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.262 0.738 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.365 0.635 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -11.889 -29.535 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.240 5.240 3 C -0.069 4.069 4 C -0.012 4.012 5 O -0.293 6.293 6 C 0.119 3.881 7 C -0.544 4.544 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.734 3.266 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.196 1.196 15 C -0.099 4.099 16 C 0.094 3.906 17 H 0.128 0.872 18 O -0.328 6.328 19 C -0.113 4.113 20 C -0.107 4.107 21 C -0.137 4.137 22 C -0.102 4.102 23 C -0.024 4.024 24 C -0.057 4.057 25 N -0.138 5.138 26 N -0.043 5.043 27 N -0.075 5.075 28 H 0.330 0.670 29 N -0.148 5.148 30 C -0.084 4.084 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.212 0.788 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.200 -11.157 -29.013 31.516 hybrid contribution -0.274 -0.562 -0.653 0.904 sum 4.926 -11.718 -29.666 32.274 Atomic orbital electron populations 1.22439 0.87476 1.02464 0.99967 1.61739 1.07226 1.13792 1.41273 1.22217 1.00923 0.87891 0.95880 1.22253 0.96092 0.94526 0.88332 1.87996 1.69415 1.56639 1.15294 1.20163 0.95459 0.93440 0.78994 1.21089 1.27753 1.15171 0.90345 0.91388 1.24949 0.95790 0.95470 0.98501 1.69969 1.39273 1.27229 1.17759 0.86356 0.79493 0.80421 0.80356 1.20582 1.21260 1.19552 1.22789 0.96073 0.98754 0.92266 1.20789 0.94873 0.93038 0.81942 0.87236 1.86836 1.73538 1.36056 1.36386 1.20666 0.98164 0.95057 0.97401 1.21132 0.98525 0.93642 0.97421 1.21049 0.97985 1.00252 0.94418 1.21145 0.97039 0.92832 0.99234 1.17182 0.98594 0.93313 0.93281 1.23723 0.99455 0.88635 0.93928 1.76138 1.10098 1.15149 1.12452 1.78947 1.13913 1.09848 1.01576 1.47737 1.33237 1.04062 1.22416 0.67041 1.74906 1.11575 1.19141 1.09157 1.21040 0.94916 1.00489 0.92001 0.91596 0.90603 0.96452 0.90117 0.94498 0.94460 0.94623 0.98158 0.98057 0.92868 0.94068 0.90688 0.78818 0.85345 0.85061 0.85056 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.37 60.06 0.56 0.88 16 2 N -0.52 -7.63 4.52 -242.91 -1.10 -8.72 16 3 C 0.06 0.90 5.17 -3.82 -0.02 0.88 16 4 C 0.07 1.27 6.01 37.16 0.22 1.49 16 5 O -0.37 -9.42 10.27 -35.23 -0.36 -9.78 16 6 C 0.19 5.52 5.69 36.00 0.20 5.73 16 7 C -0.51 -15.46 9.43 -34.44 -0.32 -15.78 16 8 H 0.07 2.10 7.81 -52.49 -0.41 1.69 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 11 Si 0.91 22.64 29.54 -169.99 -5.02 17.62 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.03 0.34 4.64 -3.82 -0.02 0.32 16 16 C 0.15 1.85 3.27 -27.88 -0.09 1.75 16 17 H 0.11 1.47 6.65 -51.93 -0.35 1.13 16 18 O -0.52 -7.50 13.06 -35.23 -0.46 -7.96 16 19 C -0.11 -1.11 4.97 -104.67 -0.52 -1.63 16 20 C -0.09 -0.72 9.31 -39.53 -0.37 -1.09 16 21 C -0.12 -0.86 10.04 -39.63 -0.40 -1.26 16 22 C -0.08 -0.67 9.70 -39.26 -0.38 -1.05 16 23 C -0.02 -0.20 5.88 -104.89 -0.62 -0.82 16 24 C 0.22 2.30 7.94 -156.30 -1.24 1.06 16 25 N -0.27 -3.03 12.23 32.16 0.39 -2.63 16 26 N -0.05 -0.44 13.47 60.35 0.81 0.37 16 27 N -0.23 -1.42 7.90 60.35 0.48 -0.95 16 28 H 0.48 0.57 8.96 -340.37 -3.05 -2.48 16 29 N -0.30 -2.51 12.08 32.17 0.39 -2.13 16 30 C -0.06 -0.66 9.32 -39.26 -0.37 -1.02 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.10 6.05 -51.93 -0.31 0.79 16 33 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 34 H 0.08 1.26 6.64 -51.93 -0.34 0.91 16 35 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.66 6.19 -51.93 -0.32 0.34 16 38 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.04 0.43 7.99 -51.93 -0.42 0.02 16 42 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 43 H 0.37 3.75 7.50 45.56 0.34 4.09 16 44 H 0.13 0.79 6.78 -52.49 -0.36 0.44 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 46 H 0.13 0.88 7.88 -52.48 -0.41 0.47 16 47 H 0.14 1.41 7.86 -52.48 -0.41 1.00 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -37.65 397.31 -10.14 -47.79 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -8.55 Total: -3.53 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.45 Total: -9.04 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.71 Total: -41.09 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.82 Total: -17.75 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.65 -10.14 -47.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591109376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.667 kcal (2) G-P(sol) polarization free energy of solvation -37.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds