Wall clock time and date at job start Wed Apr 1 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99992 * 2 1 4 4 C 1.52998 * 109.46986 * 66.04754 * 3 2 1 5 5 O 1.42902 * 109.47038 * 64.99965 * 4 3 2 6 6 C 1.42905 * 113.99993 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46990 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00151 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99647 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00165 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99783 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47137 * 90.00121 * 11 9 7 13 13 H 1.48500 * 109.46722 * 210.00440 * 11 9 7 14 14 H 1.48501 * 109.46893 * 330.00080 * 11 9 7 15 15 C 1.46903 * 111.00097 * 236.05214 * 2 1 3 16 16 C 1.53002 * 109.47047 * 199.99572 * 15 2 1 17 17 H 1.08992 * 109.46915 * 300.55581 * 16 15 2 18 18 O 1.42901 * 109.47050 * 60.55549 * 16 15 2 19 19 C 1.50703 * 109.47062 * 180.55000 * 16 15 2 20 20 C 1.38331 * 119.94346 * 280.00152 * 19 16 15 21 21 C 1.38297 * 120.23893 * 180.02562 * 20 19 16 22 22 C 1.38051 * 120.11324 * 0.02562 * 21 20 19 23 23 C 1.39277 * 119.88393 * 359.97438 * 22 21 20 24 24 C 1.48459 * 120.11948 * 179.97438 * 23 22 21 25 25 N 1.34050 * 126.67696 * 179.68361 * 24 23 22 26 26 N 1.28982 * 107.26560 * 179.83661 * 25 24 23 27 27 N 1.28723 * 108.94760 * 0.43950 * 26 25 24 28 28 H 0.97006 * 125.34131 * 179.71945 * 27 26 25 29 29 N 1.28867 * 109.31896 * 359.71754 * 27 26 25 30 30 C 1.38004 * 119.93899 * 100.02029 * 19 16 15 31 31 H 1.08997 * 109.46713 * 188.27477 * 1 2 3 32 32 H 1.09004 * 109.47056 * 308.27187 * 1 2 3 33 33 H 1.08999 * 109.47276 * 68.27421 * 1 2 3 34 34 H 1.09001 * 109.47305 * 186.05085 * 3 2 1 35 35 H 1.08998 * 109.46908 * 306.04987 * 3 2 1 36 36 H 1.08997 * 109.47307 * 185.00078 * 4 3 2 37 37 H 1.09004 * 109.46874 * 305.00427 * 4 3 2 38 38 H 1.09004 * 109.46901 * 300.00476 * 6 5 4 39 39 H 1.09004 * 109.46646 * 59.99863 * 6 5 4 40 40 H 0.96996 * 120.00046 * 180.02562 * 10 9 7 41 41 H 1.09000 * 109.47144 * 79.99476 * 15 2 1 42 42 H 1.08998 * 109.46777 * 319.99347 * 15 2 1 43 43 H 0.96700 * 114.00532 * 59.99435 * 18 16 15 44 44 H 1.08001 * 119.88342 * 0.04617 * 20 19 16 45 45 H 1.07997 * 119.94100 * 180.02562 * 21 20 19 46 46 H 1.08005 * 120.05374 * 179.70068 * 22 21 20 47 47 H 1.08006 * 120.05819 * 0.02562 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 8 2.2956 1.3975 2.3979 6 6 2.0214 1.9627 3.6814 7 6 2.7697 1.1933 4.7393 8 1 3.3928 0.3568 4.4594 9 6 2.6598 1.5582 6.0644 10 7 1.9015 2.5772 6.4051 11 14 3.5879 0.6050 7.3757 12 1 4.9269 1.2148 7.5764 13 1 2.8278 0.6487 8.6506 14 1 3.7468 -0.8065 6.9423 15 6 1.9955 -0.7659 -1.1377 16 6 3.4438 -1.1696 -0.8542 17 1 4.0464 -0.2750 -0.6979 18 8 3.4900 -1.9858 0.3179 19 6 3.9882 -1.9437 -2.0270 20 6 3.6789 -3.2841 -2.1731 21 6 4.1757 -4.0004 -3.2468 22 6 4.9839 -3.3805 -4.1786 23 6 5.2985 -2.0312 -4.0362 24 6 6.1677 -1.3595 -5.0349 25 7 6.5472 -0.0739 -5.0301 26 7 7.2979 0.1075 -6.0632 27 7 7.3929 -1.0010 -6.7106 28 1 7.8981 -1.1316 -7.5284 29 7 6.7117 -1.9099 -6.1020 30 6 4.7948 -1.3142 -2.9531 31 1 -0.3632 -1.0170 0.1479 32 1 -0.3633 0.6366 0.8068 33 1 -0.3634 0.3804 -0.9546 34 1 3.0797 1.3445 -0.1083 35 1 1.5610 1.9274 -0.8309 36 1 1.9438 3.1011 1.2832 37 1 0.5532 2.0057 1.4691 38 1 2.3415 3.0046 3.6955 39 1 0.9512 1.9087 3.8810 40 1 1.8244 2.8341 7.3373 41 1 1.9590 -0.1515 -2.0373 42 1 1.3908 -1.6608 -1.2841 43 1 2.9745 -2.8011 0.2501 44 1 3.0470 -3.7729 -1.4464 45 1 3.9308 -5.0465 -3.3564 46 1 5.3753 -3.9421 -5.0141 47 1 5.0362 -0.2678 -2.8376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591109376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:08 Heat of formation + Delta-G solvation = 35.121280 kcal Electronic energy + Delta-G solvation = -29468.307285 eV Core-core repulsion = 25267.443135 eV Total energy + Delta-G solvation = -4200.864150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.49700 -40.80667 -39.30313 -38.15674 -36.84019 -35.43793 -34.84446 -34.59162 -32.77318 -31.56193 -31.05704 -29.41338 -28.83496 -26.29127 -25.63061 -25.53766 -24.47918 -23.94611 -23.09328 -21.89018 -21.42477 -20.18758 -18.58348 -18.50404 -18.17770 -17.44402 -17.33299 -16.88328 -16.69646 -16.60295 -16.31163 -15.86538 -15.68215 -15.37975 -15.18559 -14.78926 -14.59273 -14.46979 -14.25612 -13.95989 -13.58849 -13.44044 -13.40186 -13.07273 -12.90728 -12.75336 -12.71886 -12.68436 -12.48512 -12.41467 -12.30026 -12.20266 -12.14403 -12.00008 -11.71583 -11.66255 -11.20140 -10.92943 -10.80503 -10.11415 -9.82810 -9.64153 -9.05699 -8.28206 -6.39260 -0.31029 0.14715 0.34783 1.29092 1.39807 1.41069 1.44450 1.57025 2.38446 2.62292 2.73049 2.94801 3.05029 3.13815 3.29672 3.65871 3.80584 3.89745 4.03618 4.09852 4.14456 4.18495 4.26141 4.33588 4.39780 4.42243 4.50898 4.54520 4.57802 4.65533 4.67856 4.80049 4.81922 4.86726 4.95288 5.02054 5.03198 5.12636 5.23464 5.40024 5.44256 5.56978 5.59410 5.60253 5.90361 6.02362 6.15136 6.23119 6.62236 6.92445 7.01368 7.08199 7.32743 8.84198 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002024 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.111999 B =13833.263114 C =13984.964947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.067 3.933 4 C 0.056 3.944 5 O -0.390 6.390 6 C 0.210 3.790 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.268 1.268 13 H -0.272 1.272 14 H -0.266 1.266 15 C 0.037 3.963 16 C 0.158 3.842 17 H 0.084 0.916 18 O -0.555 6.555 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.111 4.111 22 C -0.080 4.080 23 C -0.034 4.034 24 C 0.210 3.790 25 N -0.300 5.300 26 N -0.059 5.059 27 N -0.199 5.199 28 H 0.495 0.505 29 N -0.292 5.292 30 C -0.078 4.078 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.041 0.959 38 H -0.019 1.019 39 H -0.018 1.018 40 H 0.270 0.730 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.380 0.620 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.147 0.853 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -14.264 -30.743 34.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.061 4.061 4 C -0.022 4.022 5 O -0.310 6.310 6 C 0.134 3.866 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.194 1.194 13 H -0.197 1.197 14 H -0.190 1.190 15 C -0.090 4.090 16 C 0.098 3.902 17 H 0.102 0.898 18 O -0.362 6.362 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.100 4.100 23 C -0.037 4.037 24 C -0.070 4.070 25 N -0.172 5.172 26 N -0.054 5.054 27 N -0.050 5.050 28 H 0.354 0.646 29 N -0.144 5.144 30 C -0.098 4.098 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.059 0.941 38 H -0.001 1.001 39 H 0.000 1.000 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.229 0.771 44 H 0.168 0.832 45 H 0.181 0.819 46 H 0.165 0.835 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.336 -13.523 -30.268 33.578 hybrid contribution -0.318 0.169 -0.418 0.551 sum 5.018 -13.354 -30.686 33.840 Atomic orbital electron populations 1.22418 0.86546 1.02869 1.00292 1.61667 1.08332 1.13440 1.43566 1.22091 1.00806 0.88917 0.94248 1.22619 0.96107 0.95139 0.88288 1.87952 1.70398 1.57389 1.15235 1.19771 0.93845 0.92275 0.80665 1.21360 1.28902 1.15753 0.91842 0.92410 1.25959 0.96363 0.96313 1.00731 1.70071 1.39933 1.28283 1.18853 0.85201 0.78334 0.78861 0.77127 1.19356 1.19715 1.18986 1.22781 0.95696 0.99219 0.91345 1.20651 0.95114 0.92318 0.82146 0.89842 1.86781 1.74284 1.37228 1.37883 1.20434 0.98938 0.95864 0.96680 1.21406 0.98417 0.92746 0.98083 1.21400 0.96685 1.01546 0.93275 1.21395 0.96683 0.92074 0.99815 1.17314 0.99026 0.94162 0.93218 1.23897 0.99983 0.88512 0.94597 1.76119 1.11327 1.16163 1.13586 1.78879 1.14120 1.10687 1.01674 1.47803 1.31897 1.02990 1.22353 0.64601 1.74864 1.11555 1.19252 1.08745 1.20990 0.95784 1.00241 0.92830 0.90423 0.92857 0.94154 0.90880 0.91361 0.93959 0.94091 1.00111 1.00012 0.92139 0.92916 0.88506 0.77062 0.83246 0.81920 0.83528 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.37 127.69 1.20 1.85 16 2 N -0.55 -15.81 4.52 -922.44 -4.17 -19.97 16 3 C 0.07 2.06 5.17 86.30 0.45 2.51 16 4 C 0.06 2.20 6.01 71.98 0.43 2.63 16 5 O -0.39 -20.42 10.27 -148.98 -1.53 -21.95 16 6 C 0.21 12.46 5.69 71.23 0.41 12.87 16 7 C -0.54 -33.99 9.43 25.60 0.24 -33.75 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.00 0.26 5.46 84.66 0.46 0.72 16 10 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 11 Si 0.98 46.40 29.54 68.60 2.03 48.43 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 15 C 0.04 0.81 4.64 86.30 0.40 1.21 16 16 C 0.16 3.80 3.27 29.85 0.10 3.90 16 17 H 0.08 2.40 6.65 -2.39 -0.02 2.38 16 18 O -0.56 -15.90 13.06 -148.98 -1.95 -17.85 16 19 C -0.12 -2.28 4.97 -19.90 -0.10 -2.38 16 20 C -0.09 -1.23 9.31 22.31 0.21 -1.02 16 21 C -0.11 -1.27 10.04 22.24 0.22 -1.05 16 22 C -0.08 -1.12 9.70 22.48 0.22 -0.91 16 23 C -0.03 -0.65 5.88 -20.04 -0.12 -0.77 16 24 C 0.21 4.27 7.94 137.38 1.09 5.36 16 25 N -0.30 -6.95 12.23 -52.18 -0.64 -7.59 16 26 N -0.06 -1.08 13.47 37.02 0.50 -0.58 16 27 N -0.20 -2.24 7.90 37.02 0.29 -1.95 16 28 H 0.49 0.34 8.96 -347.53 -3.12 -2.77 16 29 N -0.29 -4.58 12.08 -52.13 -0.63 -5.21 16 30 C -0.08 -1.63 9.32 22.48 0.21 -1.42 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.55 6.05 -2.39 -0.01 1.53 16 33 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 34 H 0.07 2.35 6.64 -2.39 -0.02 2.33 16 35 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.57 6.19 -2.38 -0.01 1.55 16 38 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 39 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.05 1.03 7.99 -2.39 -0.02 1.01 16 42 H 0.10 1.65 7.93 -2.39 -0.02 1.63 16 43 H 0.38 7.46 7.50 -74.06 -0.56 6.91 16 44 H 0.15 1.40 6.78 -2.91 -0.02 1.38 16 45 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 46 H 0.15 1.57 7.88 -2.91 -0.02 1.55 16 47 H 0.12 2.80 7.86 -2.91 -0.02 2.78 16 Total: -1.00 -83.06 397.31 -3.04 -86.10 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.65 Total: 8.43 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.41 Total: -10.24 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.36 Total: -92.92 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -3.48 Total: -39.80 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -83.06 -3.04 -86.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591109376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.223 kcal (2) G-P(sol) polarization free energy of solvation -83.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds