Wall clock time and date at job start Wed Apr 1 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00247 * 2 1 4 4 C 1.52997 * 109.47392 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47234 * 67.25992 * 4 3 2 6 6 C 1.46905 * 110.99939 * 290.54513 * 5 4 3 7 7 C 1.50696 * 109.47004 * 299.82290 * 6 5 4 8 8 H 1.08005 * 120.00316 * 354.87077 * 7 6 5 9 9 C 1.37876 * 119.99881 * 174.87363 * 7 6 5 10 10 N 1.31515 * 120.00181 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99977 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47112 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47184 * 120.00090 * 11 9 7 14 14 H 1.48504 * 109.46955 * 239.99818 * 11 9 7 15 15 C 1.46895 * 110.99910 * 54.50103 * 5 4 3 16 16 C 1.50701 * 109.47626 * 66.04381 * 15 5 4 17 17 C 1.38385 * 119.85037 * 269.98455 * 16 15 5 18 18 C 1.38011 * 120.23160 * 179.97438 * 17 16 15 19 19 C 1.39271 * 119.93633 * 359.97438 * 18 17 16 20 20 C 1.48396 * 120.14440 * 179.97438 * 19 18 17 21 21 N 1.34064 * 126.67740 * 179.69179 * 20 19 18 22 22 N 1.28984 * 107.26817 * 179.83685 * 21 20 19 23 23 N 1.28737 * 108.94971 * 0.43325 * 22 21 20 24 24 H 0.96993 * 125.33990 * 179.72472 * 23 22 21 25 25 N 1.28876 * 109.31764 * 359.72284 * 23 22 21 26 26 C 1.39760 * 119.70561 * 0.02970 * 19 18 17 27 27 O 1.35839 * 120.11125 * 179.97438 * 26 19 18 28 28 C 1.42901 * 116.99913 * 179.97438 * 27 26 19 29 29 C 1.38174 * 119.85128 * 89.99581 * 16 15 5 30 30 H 1.08999 * 109.46544 * 59.99924 * 1 2 3 31 31 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47040 * 300.00380 * 1 2 3 33 33 H 1.08999 * 109.46901 * 59.99439 * 3 2 1 34 34 H 1.09000 * 109.46953 * 299.99990 * 3 2 1 35 35 H 1.08999 * 109.46710 * 307.25835 * 4 3 2 36 36 H 1.08997 * 109.47170 * 187.26675 * 4 3 2 37 37 H 1.08994 * 109.47256 * 59.82245 * 6 5 4 38 38 H 1.09005 * 109.46677 * 179.82488 * 6 5 4 39 39 H 0.96995 * 120.00215 * 180.02562 * 10 9 7 40 40 H 1.09010 * 109.47110 * 306.04402 * 15 5 4 41 41 H 1.08997 * 109.47078 * 186.04789 * 15 5 4 42 42 H 1.07996 * 119.88241 * 0.02562 * 17 16 15 43 43 H 1.08006 * 120.02789 * 179.97438 * 18 17 16 44 44 H 1.09001 * 109.47599 * 300.00414 * 28 27 26 45 45 H 1.08998 * 109.46748 * 60.00236 * 28 27 26 46 46 H 1.09004 * 109.47463 * 179.97438 * 28 27 26 47 47 H 1.08005 * 119.96727 * 359.73439 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9809 0.6126 -1.2782 6 6 3.5898 -0.7993 -1.3876 7 6 4.2198 -1.5833 -0.2654 8 1 4.9131 -1.1009 0.4077 9 6 3.9110 -2.9166 -0.0980 10 7 3.0672 -3.5042 -0.9179 11 14 4.6913 -3.8884 1.2936 12 1 5.5982 -3.0032 2.0677 13 1 3.6282 -4.4128 2.1880 14 1 5.4683 -5.0219 0.7308 15 6 3.4649 1.3911 -2.4120 16 6 4.0825 2.7658 -2.4001 17 6 3.4629 3.7932 -1.7105 18 6 4.0219 5.0550 -1.6939 19 6 5.2138 5.2961 -2.3727 20 6 5.8185 6.6512 -2.3584 21 7 6.9575 7.0262 -2.9579 22 7 7.1275 8.2799 -2.7070 23 7 6.1540 8.6954 -1.9742 24 1 6.0474 9.6010 -1.6437 25 7 5.3433 7.7192 -1.7489 26 6 5.8372 4.2566 -3.0683 27 8 6.9997 4.4827 -3.7336 28 6 7.5798 3.3728 -4.4219 29 6 5.2646 2.9946 -3.0779 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8488 0.5356 0.8171 36 1 3.9782 2.1722 0.1293 37 1 2.5049 -0.8817 -1.3241 38 1 3.9292 -1.1971 -2.3440 39 1 2.8497 -4.4421 -0.7999 40 1 2.3815 1.4788 -2.3295 41 1 3.7186 0.8869 -3.3444 42 1 2.5393 3.6068 -1.1828 43 1 3.5353 5.8546 -1.1550 44 1 7.8001 2.5780 -3.7091 45 1 6.8799 3.0044 -5.1719 46 1 8.5016 3.6893 -4.9100 47 1 5.7457 2.1878 -3.6109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605095930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:01 Heat of formation + Delta-G solvation = 92.211654 kcal Electronic energy + Delta-G solvation = -30846.558879 eV Core-core repulsion = 26648.170353 eV Total energy + Delta-G solvation = -4198.388526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -44.43777 -40.24716 -38.48327 -37.27446 -35.73428 -34.37941 -33.65289 -32.45086 -31.06144 -30.18633 -28.99667 -27.71429 -26.92914 -25.93280 -24.97749 -24.55957 -23.28047 -22.49640 -21.98074 -21.18296 -19.54120 -19.32458 -17.49610 -17.15545 -16.54940 -16.26799 -16.12904 -15.89694 -15.65169 -15.64066 -14.74041 -14.38726 -14.24602 -14.14895 -14.06449 -13.70517 -13.56667 -13.25755 -12.74372 -12.47331 -12.23010 -12.01311 -11.87633 -11.64315 -11.48140 -11.36704 -11.19668 -11.13775 -11.10263 -11.06635 -11.01401 -10.92113 -10.72977 -10.63017 -10.49893 -10.08784 -9.78002 -9.07059 -8.95392 -8.66486 -8.28915 -8.05991 -7.07873 -5.88139 -3.85526 0.73305 1.19730 1.47966 2.18246 2.39139 3.27928 3.38004 3.45381 3.49781 3.69963 3.80512 4.19569 4.42022 4.54376 4.82877 4.91281 5.10548 5.19959 5.20856 5.25960 5.33891 5.38076 5.49182 5.49274 5.57166 5.58786 5.61461 5.66430 5.71490 5.80691 5.86963 5.91932 5.98793 6.15275 6.18618 6.24810 6.28223 6.32896 6.39758 6.70323 6.76461 6.83380 7.36067 7.38730 7.74303 7.86476 7.90042 8.14134 8.15910 8.32216 8.67206 9.19970 9.75611 11.23317 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002692 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.513626 B =10398.820547 C =11314.946139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.181 3.819 7 C -0.491 4.491 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.076 3.924 16 C 0.006 3.994 17 C -0.161 4.161 18 C -0.041 4.041 19 C -0.073 4.073 20 C 0.237 3.763 21 N -0.248 5.248 22 N -0.062 5.062 23 N -0.236 5.236 24 H 0.472 0.528 25 N -0.305 5.305 26 C 0.171 3.829 27 O -0.292 6.292 28 C 0.023 3.977 29 C -0.193 4.193 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.017 0.983 39 H 0.256 0.744 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.099 0.901 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 21.096 -3.785 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C -0.058 4.058 4 C -0.069 4.069 5 N -0.247 5.247 6 C 0.057 3.943 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.142 4.142 10 N -0.537 5.537 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.052 4.052 16 C 0.005 3.995 17 C -0.180 4.180 18 C -0.061 4.061 19 C -0.078 4.078 20 C -0.042 4.042 21 N -0.121 5.121 22 N -0.057 5.057 23 N -0.081 5.081 24 H 0.325 0.675 25 N -0.157 5.157 26 C 0.122 3.878 27 O -0.204 6.204 28 C -0.072 4.072 29 C -0.212 4.212 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.720 21.372 -4.029 21.817 hybrid contribution -1.184 -0.415 1.093 1.664 sum 0.536 20.957 -2.935 21.169 Atomic orbital electron populations 1.22678 0.83698 1.02286 0.98280 1.88489 1.17330 1.25631 1.94565 1.23415 0.97580 0.86127 0.98669 1.22251 0.89406 0.99928 0.95362 1.62405 1.58114 1.05181 0.99002 1.20068 0.97308 0.80014 0.96884 1.21060 1.24792 0.94248 1.12897 0.92396 1.24860 0.95351 0.97738 0.96212 1.69963 1.34846 1.11343 1.37589 0.86583 0.79021 0.80057 0.82520 1.19883 1.21351 1.21360 1.21207 0.96734 0.89941 0.97285 1.20008 0.92664 0.95449 0.91420 1.20948 1.01896 0.92247 1.02925 1.20879 0.92377 0.97293 0.95581 1.16418 0.97924 0.85924 1.07487 1.23469 0.91184 0.94271 0.95272 1.76294 1.15076 1.01050 1.19702 1.78928 1.11482 1.07099 1.08207 1.47678 1.13639 1.13143 1.33600 0.67479 1.74904 1.19868 0.96623 1.24334 1.18862 0.85758 0.92375 0.90829 1.86265 1.34361 1.36798 1.62943 1.23139 0.98543 0.89226 0.96315 1.21089 0.98380 0.95416 1.06338 0.95292 0.89975 0.95334 0.94538 0.93965 0.88599 0.91201 0.94322 0.96488 0.93413 0.93829 0.90302 0.85472 0.84745 0.92068 0.92558 0.88252 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.34 -6.96 7.57 -35.23 -0.27 -7.22 16 3 C 0.02 0.35 5.17 37.16 0.19 0.54 16 4 C 0.06 1.10 5.18 -3.83 -0.02 1.08 16 5 N -0.52 -10.60 4.74 -237.52 -1.13 -11.72 16 6 C 0.18 4.53 4.27 -4.98 -0.02 4.50 16 7 C -0.49 -13.50 8.22 -34.44 -0.28 -13.78 16 8 H 0.06 1.60 6.97 -52.48 -0.37 1.23 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.08 1.27 4.79 -4.98 -0.02 1.24 16 16 C 0.01 0.09 4.88 -104.59 -0.51 -0.42 16 17 C -0.16 -2.06 8.01 -39.61 -0.32 -2.38 16 18 C -0.04 -0.50 9.70 -39.28 -0.38 -0.88 16 19 C -0.07 -1.00 5.89 -104.76 -0.62 -1.62 16 20 C 0.24 3.24 7.91 -156.30 -1.24 2.00 16 21 N -0.25 -3.55 11.06 32.15 0.36 -3.19 16 22 N -0.06 -0.72 13.47 60.35 0.81 0.09 16 23 N -0.24 -2.05 7.90 60.35 0.48 -1.58 16 24 H 0.47 1.67 8.96 -340.36 -3.05 -1.38 16 25 N -0.31 -3.48 12.08 32.16 0.39 -3.09 16 26 C 0.17 2.39 6.69 -38.89 -0.26 2.13 16 27 O -0.29 -3.97 8.84 -19.23 -0.17 -4.14 16 28 C 0.02 0.23 9.81 101.05 0.99 1.22 16 29 C -0.19 -2.69 8.68 -39.48 -0.34 -3.03 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.64 4.44 -51.93 -0.23 0.41 16 35 H 0.10 2.04 6.33 -51.93 -0.33 1.71 16 36 H 0.07 1.14 6.53 -51.93 -0.34 0.80 16 37 H 0.04 1.04 5.29 -51.93 -0.27 0.76 16 38 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.71 5.66 -51.92 -0.29 0.42 16 41 H 0.08 1.31 7.95 -51.93 -0.41 0.90 16 42 H 0.13 1.47 6.16 -52.49 -0.32 1.15 16 43 H 0.13 1.39 7.88 -52.48 -0.41 0.97 16 44 H 0.06 0.61 7.66 -51.93 -0.40 0.22 16 45 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.14 1.81 6.30 -52.48 -0.33 1.48 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -33.95 380.35 -8.72 -42.67 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.83 Total: -2.38 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.81 Total: -6.29 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 1.64 Total: -45.15 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.44 Total: -11.36 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.95 -8.72 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605095930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.882 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds