Wall clock time and date at job start Wed Apr 1 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00247 * 2 1 4 4 C 1.52997 * 109.47392 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47234 * 67.25992 * 4 3 2 6 6 C 1.46905 * 110.99939 * 290.54513 * 5 4 3 7 7 C 1.50696 * 109.47004 * 299.82290 * 6 5 4 8 8 H 1.08005 * 120.00316 * 354.87077 * 7 6 5 9 9 C 1.37876 * 119.99881 * 174.87363 * 7 6 5 10 10 N 1.31515 * 120.00181 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99977 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47112 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47184 * 120.00090 * 11 9 7 14 14 H 1.48504 * 109.46955 * 239.99818 * 11 9 7 15 15 C 1.46895 * 110.99910 * 54.50103 * 5 4 3 16 16 C 1.50701 * 109.47626 * 66.04381 * 15 5 4 17 17 C 1.38385 * 119.85037 * 269.98455 * 16 15 5 18 18 C 1.38011 * 120.23160 * 179.97438 * 17 16 15 19 19 C 1.39271 * 119.93633 * 359.97438 * 18 17 16 20 20 C 1.48396 * 120.14440 * 179.97438 * 19 18 17 21 21 N 1.34064 * 126.67740 * 179.69179 * 20 19 18 22 22 N 1.28984 * 107.26817 * 179.83685 * 21 20 19 23 23 N 1.28737 * 108.94971 * 0.43325 * 22 21 20 24 24 H 0.96993 * 125.33990 * 179.72472 * 23 22 21 25 25 N 1.28876 * 109.31764 * 359.72284 * 23 22 21 26 26 C 1.39760 * 119.70561 * 0.02970 * 19 18 17 27 27 O 1.35839 * 120.11125 * 179.97438 * 26 19 18 28 28 C 1.42901 * 116.99913 * 179.97438 * 27 26 19 29 29 C 1.38174 * 119.85128 * 89.99581 * 16 15 5 30 30 H 1.08999 * 109.46544 * 59.99924 * 1 2 3 31 31 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47040 * 300.00380 * 1 2 3 33 33 H 1.08999 * 109.46901 * 59.99439 * 3 2 1 34 34 H 1.09000 * 109.46953 * 299.99990 * 3 2 1 35 35 H 1.08999 * 109.46710 * 307.25835 * 4 3 2 36 36 H 1.08997 * 109.47170 * 187.26675 * 4 3 2 37 37 H 1.08994 * 109.47256 * 59.82245 * 6 5 4 38 38 H 1.09005 * 109.46677 * 179.82488 * 6 5 4 39 39 H 0.96995 * 120.00215 * 180.02562 * 10 9 7 40 40 H 1.09010 * 109.47110 * 306.04402 * 15 5 4 41 41 H 1.08997 * 109.47078 * 186.04789 * 15 5 4 42 42 H 1.07996 * 119.88241 * 0.02562 * 17 16 15 43 43 H 1.08006 * 120.02789 * 179.97438 * 18 17 16 44 44 H 1.09001 * 109.47599 * 300.00414 * 28 27 26 45 45 H 1.08998 * 109.46748 * 60.00236 * 28 27 26 46 46 H 1.09004 * 109.47463 * 179.97438 * 28 27 26 47 47 H 1.08005 * 119.96727 * 359.73439 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9809 0.6126 -1.2782 6 6 3.5898 -0.7993 -1.3876 7 6 4.2198 -1.5833 -0.2654 8 1 4.9131 -1.1009 0.4077 9 6 3.9110 -2.9166 -0.0980 10 7 3.0672 -3.5042 -0.9179 11 14 4.6913 -3.8884 1.2936 12 1 5.5982 -3.0032 2.0677 13 1 3.6282 -4.4128 2.1880 14 1 5.4683 -5.0219 0.7308 15 6 3.4649 1.3911 -2.4120 16 6 4.0825 2.7658 -2.4001 17 6 3.4629 3.7932 -1.7105 18 6 4.0219 5.0550 -1.6939 19 6 5.2138 5.2961 -2.3727 20 6 5.8185 6.6512 -2.3584 21 7 6.9575 7.0262 -2.9579 22 7 7.1275 8.2799 -2.7070 23 7 6.1540 8.6954 -1.9742 24 1 6.0474 9.6010 -1.6437 25 7 5.3433 7.7192 -1.7489 26 6 5.8372 4.2566 -3.0683 27 8 6.9997 4.4827 -3.7336 28 6 7.5798 3.3728 -4.4219 29 6 5.2646 2.9946 -3.0779 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8488 0.5356 0.8171 36 1 3.9782 2.1722 0.1293 37 1 2.5049 -0.8817 -1.3241 38 1 3.9292 -1.1971 -2.3440 39 1 2.8497 -4.4421 -0.7999 40 1 2.3815 1.4788 -2.3295 41 1 3.7186 0.8869 -3.3444 42 1 2.5393 3.6068 -1.1828 43 1 3.5353 5.8546 -1.1550 44 1 7.8001 2.5780 -3.7091 45 1 6.8799 3.0044 -5.1719 46 1 8.5016 3.6893 -4.9100 47 1 5.7457 2.1878 -3.6109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605095930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:57 Heat of formation + Delta-G solvation = 67.551711 kcal Electronic energy + Delta-G solvation = -30847.628215 eV Core-core repulsion = 26648.170353 eV Total energy + Delta-G solvation = -4199.457861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -45.33444 -41.28715 -39.81857 -38.39705 -37.14912 -35.35663 -34.82895 -34.28212 -32.18957 -31.24664 -30.47255 -29.09961 -28.04868 -27.23887 -26.43616 -25.51455 -24.48719 -24.11559 -22.96174 -22.37028 -20.99660 -20.19898 -18.62051 -18.18776 -18.04309 -17.61539 -17.48592 -17.12161 -16.82661 -16.61678 -16.52082 -15.88150 -15.61639 -15.38142 -15.13563 -14.88549 -14.68802 -14.46016 -14.07020 -13.75478 -13.49168 -13.33893 -13.14093 -12.95353 -12.82646 -12.77511 -12.58582 -12.47198 -12.36227 -12.27120 -12.24353 -12.12705 -12.00462 -11.94008 -11.78249 -11.65934 -11.54897 -11.05237 -10.53340 -10.23274 -9.71013 -9.08937 -8.69722 -8.03258 -6.06847 -0.25045 0.27335 0.47600 1.37526 1.43179 1.44523 1.51832 1.56074 2.37758 2.49397 2.74676 2.78160 3.11076 3.25696 3.31510 3.58019 3.76508 3.94751 4.10841 4.23403 4.30993 4.34762 4.42019 4.44266 4.46617 4.51534 4.55301 4.58624 4.61783 4.64504 4.70122 4.75685 4.81805 4.86803 4.91538 4.97559 5.21495 5.25611 5.36084 5.50980 5.65313 5.70960 5.75440 5.77251 5.83173 6.24976 6.41731 6.45871 6.54035 6.81037 7.08884 7.24776 7.58334 9.07919 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002692 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.513626 B =10398.820547 C =11314.946139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.023 3.977 4 C 0.062 3.938 5 N -0.534 5.534 6 C 0.198 3.802 7 C -0.497 4.497 8 H 0.051 0.949 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.952 3.048 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.083 3.917 16 C -0.005 4.005 17 C -0.156 4.156 18 C -0.032 4.032 19 C -0.081 4.081 20 C 0.220 3.780 21 N -0.280 5.280 22 N -0.067 5.067 23 N -0.204 5.204 24 H 0.493 0.507 25 N -0.298 5.298 26 C 0.162 3.838 27 O -0.307 6.307 28 C 0.017 3.983 29 C -0.197 4.197 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.024 0.976 38 H -0.015 1.015 39 H 0.257 0.743 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.144 0.856 43 H 0.158 0.842 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.119 0.881 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 23.473 -2.772 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C -0.055 4.055 4 C -0.066 4.066 5 N -0.257 5.257 6 C 0.073 3.927 7 C -0.536 4.536 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.572 5.572 11 Si 0.778 3.222 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.044 4.044 16 C -0.007 4.007 17 C -0.175 4.175 18 C -0.052 4.052 19 C -0.085 4.085 20 C -0.059 4.059 21 N -0.152 5.152 22 N -0.062 5.062 23 N -0.054 5.054 24 H 0.351 0.649 25 N -0.151 5.151 26 C 0.113 3.887 27 O -0.218 6.218 28 C -0.077 4.077 29 C -0.217 4.217 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.042 0.958 38 H 0.003 0.997 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.162 0.838 43 H 0.175 0.825 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.423 23.793 -3.012 24.025 hybrid contribution -1.067 -0.976 0.759 1.633 sum 0.357 22.818 -2.254 22.931 Atomic orbital electron populations 1.22772 0.81796 1.02180 1.00296 1.88396 1.19635 1.27828 1.94958 1.23436 0.95951 0.85316 1.00761 1.22202 0.91205 1.00043 0.93177 1.62220 1.58999 1.03385 1.01085 1.19655 0.95955 0.82796 0.94319 1.21332 1.24358 0.94724 1.13188 0.93062 1.25625 0.95955 0.98856 0.98525 1.70080 1.36230 1.11608 1.39245 0.85603 0.78224 0.78609 0.79723 1.19244 1.20989 1.20959 1.21122 0.97128 0.90719 0.95454 1.19801 0.93271 0.94541 0.93086 1.21068 1.02186 0.91904 1.02299 1.21076 0.91656 0.97557 0.94886 1.16688 0.98367 0.86113 1.07361 1.23510 0.91483 0.94750 0.96142 1.76277 1.15924 1.02058 1.20912 1.78869 1.12069 1.06500 1.08752 1.47746 1.12193 1.13742 1.31764 0.64858 1.74857 1.19926 0.96505 1.23804 1.18964 0.86089 0.92417 0.91223 1.86253 1.34275 1.38150 1.63147 1.23337 0.99459 0.88605 0.96297 1.21103 0.98403 0.95675 1.06491 0.93563 0.91285 0.92857 0.91868 0.92101 0.91863 0.88702 0.95835 0.99702 0.93409 0.93243 0.91177 0.83845 0.82456 0.92413 0.91678 0.86298 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.39 -15.68 7.57 -148.98 -1.13 -16.81 16 3 C 0.02 0.73 5.17 71.98 0.37 1.10 16 4 C 0.06 2.25 5.18 86.30 0.45 2.70 16 5 N -0.53 -21.81 4.74 -905.38 -4.29 -26.10 16 6 C 0.20 10.23 4.27 85.55 0.37 10.59 16 7 C -0.50 -28.00 8.22 25.60 0.21 -27.79 16 8 H 0.05 2.89 6.97 -2.91 -0.02 2.87 16 9 C 0.01 0.44 5.46 84.65 0.46 0.90 16 10 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 11 Si 0.95 45.31 29.54 68.60 2.03 47.33 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 C 0.08 2.76 4.79 85.56 0.41 3.17 16 16 C -0.01 -0.15 4.88 -19.84 -0.10 -0.25 16 17 C -0.16 -3.60 8.01 22.25 0.18 -3.42 16 18 C -0.03 -0.69 9.70 22.46 0.22 -0.48 16 19 C -0.08 -2.09 5.89 -19.95 -0.12 -2.21 16 20 C 0.22 5.64 7.91 137.35 1.09 6.73 16 21 N -0.28 -7.67 11.06 -52.21 -0.58 -8.24 16 22 N -0.07 -1.45 13.47 37.02 0.50 -0.95 16 23 N -0.20 -3.04 7.90 37.02 0.29 -2.75 16 24 H 0.49 2.01 8.96 -347.54 -3.12 -1.10 16 25 N -0.30 -6.02 12.08 -52.16 -0.63 -6.65 16 26 C 0.16 4.42 6.69 22.72 0.15 4.57 16 27 O -0.31 -8.20 8.84 -91.74 -0.81 -9.02 16 28 C 0.02 0.35 9.81 113.37 1.11 1.46 16 29 C -0.20 -5.43 8.68 22.34 0.19 -5.23 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.70 4.44 -2.39 -0.01 1.69 16 35 H 0.06 2.71 6.33 -2.39 -0.02 2.69 16 36 H 0.09 2.93 6.53 -2.39 -0.02 2.92 16 37 H 0.02 1.32 5.29 -2.39 -0.01 1.31 16 38 H -0.02 -0.86 8.05 -2.38 -0.02 -0.88 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 40 H 0.05 1.58 5.66 -2.38 -0.01 1.56 16 41 H 0.07 2.40 7.95 -2.39 -0.02 2.38 16 42 H 0.14 2.82 6.16 -2.91 -0.02 2.80 16 43 H 0.16 2.67 7.88 -2.91 -0.02 2.65 16 44 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 45 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 46 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.14 3.68 6.30 -2.91 -0.02 3.66 16 Total: -1.00 -74.58 380.35 -0.18 -74.76 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -2.08 Total: 10.24 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 6.24 Total: -6.10 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.42 Total: -100.41 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.94 Total: -25.82 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.58 -0.18 -74.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605095930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.314 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds