Wall clock time and date at job start Wed Apr 1 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46510 * 120.00114 * 2 1 4 4 C 1.50699 * 109.47195 * 90.00062 * 3 2 1 5 5 N 1.31261 * 126.19719 * 270.00156 * 4 3 2 6 6 N 1.28808 * 110.03598 * 179.97438 * 5 4 3 7 7 C 1.31391 * 109.26039 * 359.97438 * 6 5 4 8 8 C 1.46888 * 134.26881 * 179.97438 * 7 6 5 9 9 O 1.21746 * 120.78396 * 0.02562 * 8 7 6 10 10 N 1.35151 * 118.43350 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.85739 * 180.02562 * 10 8 7 12 12 C 1.38155 * 120.28760 * 0.26815 * 10 8 7 13 13 C 1.32811 * 121.83959 * 359.43630 * 12 10 8 14 14 N 1.34466 * 126.20247 * 89.99768 * 4 3 2 15 15 C 1.34774 * 119.99973 * 179.97438 * 2 1 3 16 16 O 1.21288 * 120.00114 * 180.02562 * 15 2 1 17 17 C 1.50700 * 120.00181 * 0.02562 * 15 2 1 18 18 C 1.52997 * 109.47289 * 179.97438 * 17 15 2 19 19 C 1.52999 * 109.46761 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47141 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47583 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99933 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00097 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99974 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47221 * 59.99726 * 25 23 21 27 27 H 1.48503 * 109.47380 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47181 * 300.00033 * 25 23 21 29 29 H 1.08997 * 109.47257 * 89.99677 * 1 2 3 30 30 H 1.08992 * 109.47467 * 210.00554 * 1 2 3 31 31 H 1.09006 * 109.47053 * 330.00399 * 1 2 3 32 32 H 1.08998 * 109.47073 * 329.99616 * 3 2 1 33 33 H 1.09000 * 109.46746 * 209.99912 * 3 2 1 34 34 H 1.09002 * 109.47391 * 89.99512 * 11 10 8 35 35 H 1.09001 * 109.46813 * 329.99568 * 11 10 8 36 36 H 1.09004 * 109.47041 * 209.99695 * 11 10 8 37 37 H 1.07995 * 119.07665 * 179.70427 * 12 10 8 38 38 H 1.08000 * 119.45284 * 180.28922 * 13 12 10 39 39 H 1.09000 * 109.46741 * 300.00343 * 17 15 2 40 40 H 1.09004 * 109.46998 * 60.00045 * 17 15 2 41 41 H 1.09002 * 109.46883 * 299.99759 * 18 17 15 42 42 H 1.08997 * 109.47351 * 60.00065 * 18 17 15 43 43 H 1.08996 * 109.47544 * 299.99588 * 19 18 17 44 44 H 1.09004 * 109.47323 * 60.00284 * 19 18 17 45 45 H 1.09000 * 109.46999 * 300.00603 * 20 19 18 46 46 H 1.09004 * 109.46684 * 60.00011 * 20 19 18 47 47 H 0.97006 * 120.00212 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 7 1.6606 2.4572 2.1517 6 7 2.1770 2.6347 3.3183 7 6 3.3247 1.9984 3.3855 8 6 4.3462 1.8338 4.4281 9 8 4.2125 2.3566 5.5195 10 7 5.4379 1.0883 4.1473 11 6 6.4759 0.9030 5.1645 12 6 5.5818 0.5042 2.9036 13 6 4.6626 0.6411 1.9547 14 7 3.5207 1.3905 2.1696 15 6 2.1388 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3853 -2.4723 0.0005 18 6 2.3796 -3.6352 0.0005 19 6 1.6145 -4.9602 -0.0001 20 6 2.6087 -6.1232 -0.0008 21 6 1.8552 -7.4282 -0.0020 22 1 0.7752 -7.4282 -0.0019 23 6 2.5446 -8.6223 -0.0023 24 7 3.8597 -8.6223 -0.0019 25 14 1.6106 -10.2400 -0.0031 26 1 0.7571 -10.3182 -1.2159 27 1 2.5755 -11.3688 -0.0039 28 1 0.7564 -10.3191 1.2091 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6085 2.0284 -0.5139 33 1 3.1499 1.1384 -0.5138 34 1 6.2483 0.0181 5.7589 35 1 6.5088 1.7781 5.8135 36 1 7.4428 0.7750 4.6778 37 1 6.4643 -0.0836 2.6987 38 1 4.8123 0.1638 0.9976 39 1 0.7583 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 3.0062 -3.5774 -0.8895 42 1 3.0062 -3.5775 0.8905 43 1 0.9876 -5.0182 0.8896 44 1 0.9881 -5.0177 -0.8904 45 1 3.2354 -6.0650 -0.8907 46 1 3.2354 -6.0659 0.8893 47 1 4.3447 -9.4624 -0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645346149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:57 Heat of formation + Delta-G solvation = 30.618066 kcal Electronic energy + Delta-G solvation = -30167.334965 eV Core-core repulsion = 25966.275540 eV Total energy + Delta-G solvation = -4201.059424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.03354 -40.77772 -40.12673 -37.84079 -36.17165 -35.32248 -35.01407 -32.86913 -32.23998 -30.77061 -30.00857 -28.67861 -27.76946 -26.70391 -25.28452 -24.55830 -24.01239 -22.53197 -21.59123 -20.11545 -19.59426 -19.13410 -18.95024 -17.51679 -17.29103 -17.12444 -16.45887 -16.37243 -16.16222 -15.88958 -15.60690 -15.14414 -14.56739 -14.48816 -14.21458 -13.79978 -13.69194 -13.53032 -13.25640 -13.01496 -12.92029 -12.79246 -12.77296 -12.46706 -12.27550 -12.17268 -11.73379 -11.65422 -11.22678 -11.13487 -11.02656 -10.96374 -10.61280 -10.59150 -10.48141 -10.19022 -9.79117 -9.68786 -9.29532 -9.24022 -9.05647 -8.56595 -8.35338 -6.00508 -4.03019 0.41256 0.93672 1.78045 1.81907 2.05703 2.40959 2.80641 2.82102 3.31816 3.36373 3.38618 3.39552 3.68406 4.09068 4.20322 4.31627 4.44372 4.52383 4.58025 4.80229 4.80840 4.87334 4.94940 5.10166 5.13156 5.14432 5.18649 5.29112 5.29735 5.35163 5.41472 5.44140 5.71762 5.74351 5.96660 6.03420 6.13694 6.20006 6.44381 6.52709 6.74381 6.88486 6.97941 7.11999 7.13257 7.67476 7.82817 7.89475 8.00189 8.03047 8.42380 9.04277 9.60953 11.10768 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.002297 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.765961 B =12188.948719 C =13751.307774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.619 5.619 3 C 0.200 3.800 4 C 0.180 3.820 5 N -0.267 5.267 6 N -0.209 5.209 7 C 0.104 3.896 8 C 0.594 3.406 9 O -0.485 6.485 10 N -0.533 5.533 11 C 0.074 3.926 12 C 0.088 3.912 13 C -0.019 4.019 14 N -0.372 5.372 15 C 0.518 3.482 16 O -0.536 6.536 17 C -0.137 4.137 18 C -0.101 4.101 19 C -0.111 4.111 20 C 0.022 3.978 21 C -0.522 4.522 22 H 0.054 0.946 23 C 0.056 3.944 24 N -0.896 5.896 25 Si 0.891 3.109 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.190 0.810 38 H 0.198 0.802 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 23.478 1.564 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.353 5.353 3 C 0.074 3.926 4 C -0.086 4.086 5 N -0.112 5.112 6 N -0.056 5.056 7 C -0.158 4.158 8 C 0.381 3.619 9 O -0.355 6.355 10 N -0.255 5.255 11 C -0.067 4.067 12 C -0.032 4.032 13 C -0.137 4.137 14 N -0.057 5.057 15 C 0.309 3.691 16 O -0.412 6.412 17 C -0.177 4.177 18 C -0.139 4.139 19 C -0.149 4.149 20 C -0.015 4.015 21 C -0.560 4.560 22 H 0.072 0.928 23 C -0.145 4.145 24 N -0.535 5.535 25 Si 0.719 3.281 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.206 0.794 38 H 0.214 0.786 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.177 24.506 2.662 24.746 hybrid contribution 0.471 -1.794 -0.359 1.889 sum 2.648 22.712 2.303 22.982 Atomic orbital electron populations 1.21947 0.78115 1.04238 1.02531 1.48032 1.07802 1.04802 1.74693 1.19752 1.00364 0.87001 0.85486 1.25414 0.85065 0.99476 0.98687 1.74771 1.22898 1.15463 0.98072 1.74608 1.03092 1.16135 1.11778 1.24645 0.99555 1.03804 0.87819 1.16450 0.80135 0.79546 0.85795 1.90941 1.75860 1.46542 1.22109 1.45351 1.20528 1.45846 1.13768 1.22116 0.89114 1.04392 0.91069 1.21528 1.00664 0.97996 0.82990 1.21476 0.85734 1.02615 1.03887 1.43577 1.16286 1.34075 1.11791 1.21284 0.88238 0.85493 0.74113 1.90567 1.14178 1.87317 1.49109 1.21846 1.00191 0.91501 1.04113 1.21455 0.96957 0.92718 1.02819 1.21656 0.99125 0.93947 1.00137 1.19074 0.93998 0.91254 0.97209 1.21242 0.92967 0.91204 1.50586 0.92809 1.25027 0.94844 0.99228 0.95380 1.69954 1.06057 1.26663 1.50848 0.86677 0.79605 0.83214 0.78603 1.20243 1.21291 1.20268 0.91685 0.90355 0.90260 0.86168 0.87300 0.90407 0.88943 0.89085 0.79351 0.78557 0.89081 0.88732 0.91670 0.91981 0.93524 0.93382 0.96606 0.96707 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.24 59.84 0.61 1.10 16 2 N -0.62 -5.54 2.86 -182.95 -0.52 -6.06 16 3 C 0.20 1.61 5.93 -5.19 -0.03 1.58 16 4 C 0.18 2.01 7.70 -155.30 -1.20 0.82 16 5 N -0.27 -3.62 12.23 32.73 0.40 -3.22 16 6 N -0.21 -3.23 12.29 32.34 0.40 -2.83 16 7 C 0.10 1.43 8.12 -154.30 -1.25 0.18 16 8 C 0.59 7.52 7.66 -12.59 -0.10 7.42 16 9 O -0.48 -7.34 16.79 5.15 0.09 -7.25 16 10 N -0.53 -4.58 3.06 -124.90 -0.38 -4.96 16 11 C 0.07 0.38 10.43 59.85 0.62 1.00 16 12 C 0.09 0.61 10.24 -16.56 -0.17 0.44 16 13 C -0.02 -0.17 10.44 -16.51 -0.17 -0.34 16 14 N -0.37 -4.28 2.97 -58.39 -0.17 -4.46 16 15 C 0.52 6.01 7.67 -10.99 -0.08 5.93 16 16 O -0.54 -7.24 13.20 5.55 0.07 -7.17 16 17 C -0.14 -1.62 4.25 -27.88 -0.12 -1.74 16 18 C -0.10 -1.64 4.50 -26.73 -0.12 -1.76 16 19 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 20 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 21 C -0.52 -14.67 9.11 -34.45 -0.31 -14.98 16 22 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 25 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.51 6.44 -51.93 -0.33 0.17 16 31 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 32 H 0.12 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.11 0.81 7.42 -51.93 -0.39 0.43 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.54 7.45 -51.93 -0.39 0.15 16 36 H 0.09 0.18 8.03 -51.93 -0.42 -0.24 16 37 H 0.19 0.54 8.05 -52.49 -0.42 0.12 16 38 H 0.20 1.69 6.10 -52.49 -0.32 1.37 16 39 H 0.09 1.00 7.40 -51.93 -0.38 0.61 16 40 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -37.51 395.66 -7.96 -45.47 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.83 Total: -5.11 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.69 Total: -0.73 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.46 Total: -47.65 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.16 Total: -14.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.51 -7.96 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645346149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.089 kcal (2) G-P(sol) polarization free energy of solvation -37.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds