Wall clock time and date at job start Wed Apr 1 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46510 * 120.00114 * 2 1 4 4 C 1.50699 * 109.47195 * 90.00062 * 3 2 1 5 5 N 1.31261 * 126.19719 * 270.00156 * 4 3 2 6 6 N 1.28808 * 110.03598 * 179.97438 * 5 4 3 7 7 C 1.31391 * 109.26039 * 359.97438 * 6 5 4 8 8 C 1.46888 * 134.26881 * 179.97438 * 7 6 5 9 9 O 1.21746 * 120.78396 * 0.02562 * 8 7 6 10 10 N 1.35151 * 118.43350 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.85739 * 180.02562 * 10 8 7 12 12 C 1.38155 * 120.28760 * 0.26815 * 10 8 7 13 13 C 1.32811 * 121.83959 * 359.43630 * 12 10 8 14 14 N 1.34466 * 126.20247 * 89.99768 * 4 3 2 15 15 C 1.34774 * 119.99973 * 179.97438 * 2 1 3 16 16 O 1.21288 * 120.00114 * 180.02562 * 15 2 1 17 17 C 1.50700 * 120.00181 * 0.02562 * 15 2 1 18 18 C 1.52997 * 109.47289 * 179.97438 * 17 15 2 19 19 C 1.52999 * 109.46761 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.47141 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47583 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99933 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00097 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99974 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47221 * 59.99726 * 25 23 21 27 27 H 1.48503 * 109.47380 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47181 * 300.00033 * 25 23 21 29 29 H 1.08997 * 109.47257 * 89.99677 * 1 2 3 30 30 H 1.08992 * 109.47467 * 210.00554 * 1 2 3 31 31 H 1.09006 * 109.47053 * 330.00399 * 1 2 3 32 32 H 1.08998 * 109.47073 * 329.99616 * 3 2 1 33 33 H 1.09000 * 109.46746 * 209.99912 * 3 2 1 34 34 H 1.09002 * 109.47391 * 89.99512 * 11 10 8 35 35 H 1.09001 * 109.46813 * 329.99568 * 11 10 8 36 36 H 1.09004 * 109.47041 * 209.99695 * 11 10 8 37 37 H 1.07995 * 119.07665 * 179.70427 * 12 10 8 38 38 H 1.08000 * 119.45284 * 180.28922 * 13 12 10 39 39 H 1.09000 * 109.46741 * 300.00343 * 17 15 2 40 40 H 1.09004 * 109.46998 * 60.00045 * 17 15 2 41 41 H 1.09002 * 109.46883 * 299.99759 * 18 17 15 42 42 H 1.08997 * 109.47351 * 60.00065 * 18 17 15 43 43 H 1.08996 * 109.47544 * 299.99588 * 19 18 17 44 44 H 1.09004 * 109.47323 * 60.00284 * 19 18 17 45 45 H 1.09000 * 109.46999 * 300.00603 * 20 19 18 46 46 H 1.09004 * 109.46684 * 60.00011 * 20 19 18 47 47 H 0.97006 * 120.00212 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 7 1.6606 2.4572 2.1517 6 7 2.1770 2.6347 3.3183 7 6 3.3247 1.9984 3.3855 8 6 4.3462 1.8338 4.4281 9 8 4.2125 2.3566 5.5195 10 7 5.4379 1.0883 4.1473 11 6 6.4759 0.9030 5.1645 12 6 5.5818 0.5042 2.9036 13 6 4.6626 0.6411 1.9547 14 7 3.5207 1.3905 2.1696 15 6 2.1388 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3853 -2.4723 0.0005 18 6 2.3796 -3.6352 0.0005 19 6 1.6145 -4.9602 -0.0001 20 6 2.6087 -6.1232 -0.0008 21 6 1.8552 -7.4282 -0.0020 22 1 0.7752 -7.4282 -0.0019 23 6 2.5446 -8.6223 -0.0023 24 7 3.8597 -8.6223 -0.0019 25 14 1.6106 -10.2400 -0.0031 26 1 0.7571 -10.3182 -1.2159 27 1 2.5755 -11.3688 -0.0039 28 1 0.7564 -10.3191 1.2091 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6085 2.0284 -0.5139 33 1 3.1499 1.1384 -0.5138 34 1 6.2483 0.0181 5.7589 35 1 6.5088 1.7781 5.8135 36 1 7.4428 0.7750 4.6778 37 1 6.4643 -0.0836 2.6987 38 1 4.8123 0.1638 0.9976 39 1 0.7583 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 3.0062 -3.5774 -0.8895 42 1 3.0062 -3.5775 0.8905 43 1 0.9876 -5.0182 0.8896 44 1 0.9881 -5.0177 -0.8904 45 1 3.2354 -6.0650 -0.8907 46 1 3.2354 -6.0659 0.8893 47 1 4.3447 -9.4624 -0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645346149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:56 Heat of formation + Delta-G solvation = 7.282651 kcal Electronic energy + Delta-G solvation = -30168.346864 eV Core-core repulsion = 25966.275540 eV Total energy + Delta-G solvation = -4202.071324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.92249 -41.61038 -40.98015 -38.71913 -37.06018 -36.50730 -36.12581 -34.64233 -33.24977 -31.54653 -31.45502 -29.50242 -28.50802 -27.76844 -26.62576 -25.36444 -24.85422 -24.02835 -22.58085 -21.70742 -20.43916 -19.94861 -19.79379 -18.45222 -18.33716 -18.01676 -17.92269 -17.25165 -17.14448 -16.77754 -16.52665 -16.42657 -16.12651 -15.41095 -15.08174 -14.68755 -14.53078 -14.49035 -14.37012 -13.91488 -13.65070 -13.59926 -13.56895 -13.52650 -13.40989 -13.30959 -13.11710 -12.93126 -12.79391 -12.37062 -12.12385 -12.10334 -12.05663 -11.96677 -11.89001 -11.35173 -11.32850 -11.17370 -11.00524 -10.63715 -10.52987 -9.95477 -9.29582 -8.18078 -6.29302 -0.42303 0.08600 0.98376 1.06528 1.22825 1.41085 1.43936 1.51757 1.55391 1.92145 2.06913 2.42349 2.61227 2.93827 3.14893 3.31150 3.47626 3.66030 3.78799 4.04506 4.13604 4.13960 4.16167 4.27520 4.31665 4.42606 4.44214 4.54533 4.63398 4.66462 4.70551 4.77072 4.78228 4.84751 4.89206 5.02453 5.04397 5.22207 5.30227 5.35195 5.38168 5.40473 5.58343 5.76617 5.80881 5.89970 6.20280 6.26723 6.27625 6.88813 7.05381 7.09085 7.40092 8.93616 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.002297 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.765961 B =12188.948719 C =13751.307774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.612 5.612 3 C 0.201 3.799 4 C 0.181 3.819 5 N -0.285 5.285 6 N -0.251 5.251 7 C 0.083 3.917 8 C 0.584 3.416 9 O -0.523 6.523 10 N -0.523 5.523 11 C 0.066 3.934 12 C 0.108 3.892 13 C -0.046 4.046 14 N -0.367 5.367 15 C 0.515 3.485 16 O -0.560 6.560 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.098 4.098 20 C 0.022 3.978 21 C -0.544 4.544 22 H 0.062 0.938 23 C -0.003 4.003 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.265 1.265 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.238 0.762 38 H 0.204 0.796 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.059 0.941 45 H -0.011 1.011 46 H -0.015 1.015 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 22.847 0.445 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.345 5.345 3 C 0.075 3.925 4 C -0.085 4.085 5 N -0.130 5.130 6 N -0.099 5.099 7 C -0.179 4.179 8 C 0.372 3.628 9 O -0.397 6.397 10 N -0.243 5.243 11 C -0.073 4.073 12 C -0.011 4.011 13 C -0.163 4.163 14 N -0.051 5.051 15 C 0.306 3.694 16 O -0.439 6.439 17 C -0.168 4.168 18 C -0.129 4.129 19 C -0.136 4.136 20 C -0.015 4.015 21 C -0.582 4.582 22 H 0.081 0.919 23 C -0.200 4.200 24 N -0.575 5.575 25 Si 0.788 3.212 26 H -0.190 1.190 27 H -0.210 1.210 28 H -0.192 1.192 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.168 0.832 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.254 0.746 38 H 0.221 0.779 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.007 0.993 46 H 0.004 0.996 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.678 23.880 1.523 23.987 hybrid contribution 0.719 -1.625 -0.026 1.778 sum 2.398 22.255 1.497 22.434 Atomic orbital electron populations 1.22162 0.76449 1.04482 1.04221 1.48016 1.08808 1.04272 1.73416 1.20061 1.01418 0.87210 0.83772 1.25969 0.84538 0.98612 0.99427 1.74660 1.23827 1.16575 0.97969 1.74500 1.04472 1.17871 1.13022 1.24845 0.99691 1.04362 0.89052 1.16618 0.80966 0.80036 0.85193 1.90904 1.76907 1.48525 1.23372 1.45564 1.19672 1.44082 1.14957 1.22456 0.89776 1.04216 0.90851 1.22302 1.01190 0.96216 0.81366 1.21828 0.85712 1.03646 1.05081 1.43750 1.16862 1.33552 1.10952 1.21180 0.87931 0.86110 0.74228 1.90559 1.15129 1.87713 1.50466 1.21705 0.99200 0.89944 1.05991 1.21211 0.97274 0.92915 1.01455 1.21458 0.97912 0.93253 1.00947 1.19018 0.94588 0.93419 0.94474 1.21735 0.93652 0.92458 1.50315 0.91947 1.26003 0.95761 1.03422 0.94841 1.70097 1.07860 1.27762 1.51812 0.85525 0.78289 0.78142 0.79242 1.18982 1.21004 1.19216 0.89211 0.90115 0.90117 0.83238 0.86499 0.89740 0.89921 0.84896 0.74605 0.77930 0.87787 0.86268 0.92835 0.93668 0.92868 0.92193 0.99278 0.99614 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.24 127.77 1.31 2.01 16 2 N -0.61 -9.56 2.86 -851.13 -2.43 -11.99 16 3 C 0.20 2.86 5.93 85.63 0.51 3.37 16 4 C 0.18 3.96 7.70 138.09 1.06 5.02 16 5 N -0.29 -7.85 12.23 -50.38 -0.62 -8.47 16 6 N -0.25 -8.11 12.29 -51.59 -0.63 -8.75 16 7 C 0.08 2.36 8.12 135.97 1.10 3.47 16 8 C 0.58 15.17 7.66 86.45 0.66 15.83 16 9 O -0.52 -16.67 16.79 -4.49 -0.08 -16.75 16 10 N -0.52 -8.30 3.06 -667.06 -2.04 -10.34 16 11 C 0.07 0.55 10.43 127.77 1.33 1.88 16 12 C 0.11 1.24 10.24 82.52 0.84 2.09 16 13 C -0.05 -0.76 10.44 82.50 0.86 0.10 16 14 N -0.37 -8.35 2.97 -338.66 -1.01 -9.35 16 15 C 0.52 10.96 7.67 87.66 0.67 11.64 16 16 O -0.56 -14.42 13.20 -3.05 -0.04 -14.46 16 17 C -0.13 -2.75 4.25 29.85 0.13 -2.62 16 18 C -0.09 -2.85 4.50 30.59 0.14 -2.71 16 19 C -0.10 -3.75 5.15 30.60 0.16 -3.59 16 20 C 0.02 1.15 4.97 29.85 0.15 1.30 16 21 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 22 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 23 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 24 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 25 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.81 6.44 -2.39 -0.02 0.80 16 31 H 0.08 0.85 8.07 -2.38 -0.02 0.83 16 32 H 0.15 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.12 1.52 7.42 -2.39 -0.02 1.50 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.91 7.45 -2.39 -0.02 0.89 16 36 H 0.13 0.01 8.03 -2.38 -0.02 -0.01 16 37 H 0.24 0.32 8.05 -2.91 -0.02 0.30 16 38 H 0.20 3.18 6.10 -2.91 -0.02 3.16 16 39 H 0.10 1.99 7.40 -2.39 -0.02 1.97 16 40 H 0.12 1.98 8.11 -2.39 -0.02 1.96 16 41 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 42 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 45 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -85.79 395.66 6.07 -79.71 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.99 Total: 3.56 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 9.62 Total: 7.71 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -6.45 Total: -105.50 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.12 Total: -31.21 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -85.79 6.07 -79.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645346149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.996 kcal (2) G-P(sol) polarization free energy of solvation -85.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds