Wall clock time and date at job start Wed Apr 1 2020 05:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29109 * 126.00676 * 2 1 4 4 N 1.29024 * 110.25583 * 180.09472 * 3 2 1 5 5 C 1.32902 * 108.63610 * 0.02562 * 4 3 2 6 6 C 1.34399 * 126.00724 * 180.02562 * 2 1 3 7 7 C 1.50531 * 129.25554 * 359.80648 * 6 2 1 8 8 C 1.53438 * 108.32603 * 196.49935 * 7 6 2 9 9 H 1.09002 * 109.45330 * 70.30171 * 8 7 6 10 10 C 1.50703 * 109.44250 * 190.25658 * 8 7 6 11 11 O 1.21282 * 120.00044 * 6.95367 * 10 8 7 12 12 N 1.34781 * 119.99694 * 186.95024 * 10 8 7 13 13 C 1.46961 * 120.59286 * 3.17092 * 12 10 8 14 14 C 1.53812 * 108.39962 * 124.75508 * 13 12 10 15 15 N 1.46961 * 108.57938 * 49.63607 * 14 13 12 16 16 C 1.34772 * 120.59636 * 124.66830 * 15 14 13 17 17 O 1.21689 * 120.00198 * 185.15737 * 16 15 14 18 18 C 1.46371 * 120.00010 * 5.15645 * 16 15 14 19 19 H 1.07996 * 120.00029 * 354.93577 * 18 16 15 20 20 C 1.40054 * 120.00204 * 174.93177 * 18 16 15 21 21 N 1.30669 * 120.00137 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 120.00127 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47092 * 89.99804 * 22 20 18 24 24 H 1.48505 * 109.46699 * 209.99902 * 22 20 18 25 25 H 1.48494 * 109.46912 * 329.99630 * 22 20 18 26 26 C 1.46966 * 118.81032 * 304.64525 * 15 14 13 27 27 C 1.46960 * 120.59160 * 183.44067 * 12 10 8 28 28 C 1.53103 * 109.55456 * 310.27473 * 8 7 6 29 29 C 1.50604 * 129.16271 * 179.88980 * 5 4 3 30 30 H 1.09000 * 109.46870 * 269.97395 * 1 2 3 31 31 H 1.09001 * 109.47189 * 29.97333 * 1 2 3 32 32 H 1.08996 * 109.47220 * 149.97595 * 1 2 3 33 33 H 1.09002 * 109.69200 * 76.79400 * 7 6 2 34 34 H 1.09005 * 109.72909 * 316.23406 * 7 6 2 35 35 H 1.09003 * 109.60863 * 244.53946 * 13 12 10 36 36 H 1.09004 * 109.61428 * 5.04298 * 13 12 10 37 37 H 1.09000 * 109.74229 * 289.84474 * 14 13 12 38 38 H 1.09000 * 109.53051 * 169.29830 * 14 13 12 39 39 H 0.96994 * 120.00491 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.61084 * 295.48171 * 26 15 14 41 41 H 1.08997 * 109.75146 * 175.05569 * 26 15 14 42 42 H 1.09001 * 109.61141 * 354.95597 * 27 12 10 43 43 H 1.09000 * 109.60609 * 115.46268 * 27 12 10 44 44 H 1.08997 * 109.45621 * 310.01902 * 28 8 7 45 45 H 1.09002 * 109.44971 * 190.07812 * 28 8 7 46 46 H 1.08996 * 109.69067 * 76.82942 * 29 5 4 47 47 H 1.09003 * 109.69049 * 316.25161 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0020 5 6 3.5327 -0.6332 -0.0039 6 6 2.2551 -1.0872 -0.0005 7 6 1.8722 -2.5430 0.0028 8 6 3.1012 -3.3642 0.4144 9 1 3.3135 -3.1956 1.4702 10 6 2.8261 -4.8281 0.1851 11 8 1.8088 -5.1730 -0.3778 12 7 3.7108 -5.7539 0.6056 13 6 4.9137 -5.3553 1.3500 14 6 4.9403 -6.1283 2.6794 15 7 4.7224 -7.5539 2.3966 16 6 5.6070 -8.4797 2.8170 17 8 5.4661 -9.6453 2.4973 18 6 6.7373 -8.0831 3.6583 19 1 6.9092 -7.0391 3.8747 20 6 7.5958 -9.0575 4.1828 21 7 7.3875 -10.3207 3.9215 22 14 9.0378 -8.5513 5.2570 23 1 8.6091 -8.5197 6.6784 24 1 10.1431 -9.5298 5.0949 25 1 9.5075 -7.2023 4.8515 26 6 3.5224 -7.9520 1.6474 27 6 3.4928 -7.1795 0.3228 28 6 4.3085 -2.9348 -0.4236 29 6 4.7468 -1.5243 -0.0089 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.5493 -2.8401 -0.9950 34 1 1.0639 -2.7093 0.7150 35 1 5.8019 -5.5961 0.7658 36 1 4.8828 -4.2839 1.5485 37 1 4.1510 -5.7606 3.3350 38 1 5.9098 -5.9946 3.1593 39 1 7.9822 -10.9955 4.2844 40 1 2.6320 -7.7141 2.2296 41 1 3.5523 -9.0227 1.4458 42 1 2.5234 -7.3131 -0.1571 43 1 4.2822 -7.5472 -0.3328 44 1 4.0363 -2.9346 -1.4790 45 1 5.1299 -3.6326 -0.2609 46 1 5.1844 -1.5544 0.9889 47 1 5.4793 -1.1430 -0.7204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645915583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:53 Heat of formation + Delta-G solvation = 37.631751 kcal Electronic energy + Delta-G solvation = -31104.061092 eV Core-core repulsion = 26903.305804 eV Total energy + Delta-G solvation = -4200.755288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.66006 -40.47213 -38.21665 -36.85558 -35.96175 -35.16898 -33.17240 -32.54649 -31.48581 -30.88653 -30.26821 -28.17466 -27.50174 -26.23624 -24.80741 -23.59593 -23.21992 -21.98698 -21.65376 -20.40275 -19.57853 -18.58567 -17.68802 -17.28156 -16.87483 -16.25400 -15.98712 -15.68078 -15.29934 -14.81396 -14.58312 -14.36306 -14.30325 -14.15393 -14.09431 -13.97012 -13.85610 -13.60622 -13.19993 -12.92716 -12.70388 -12.46088 -12.24720 -12.01369 -11.82507 -11.68726 -11.49810 -11.41826 -11.30092 -11.18842 -11.06582 -11.00307 -10.84098 -10.74951 -10.31578 -10.22515 -10.15543 -9.70126 -9.08907 -8.98167 -8.73509 -7.71612 -7.33110 -6.30399 -4.76638 1.29237 2.02759 2.30382 2.56589 2.95525 3.07127 3.14703 3.17076 3.82596 3.99021 4.07362 4.26896 4.37477 4.40979 4.45486 4.48112 4.54433 4.56672 4.79435 4.84207 4.88023 5.10506 5.13044 5.20292 5.22270 5.30141 5.44265 5.51280 5.53368 5.54736 5.57457 5.69602 5.74668 5.84651 5.86230 5.89111 5.97066 6.01620 6.21125 6.28118 6.28962 6.44933 6.63263 7.34113 7.41850 7.45462 7.98265 8.13283 8.20415 8.26431 8.91192 9.28127 10.45316 10.63816 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002524 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.974182 B =11092.207842 C =12215.239107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.100 5.100 4 N -0.261 5.261 5 C -0.020 4.020 6 C -0.015 4.015 7 C -0.024 4.024 8 C -0.101 4.101 9 H 0.105 0.895 10 C 0.521 3.479 11 O -0.550 6.550 12 N -0.600 5.600 13 C 0.084 3.916 14 C 0.108 3.892 15 N -0.643 5.643 16 C 0.559 3.441 17 O -0.575 6.575 18 C -0.545 4.545 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.766 5.766 22 Si 0.907 3.093 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.108 3.892 27 C 0.099 3.901 28 C -0.116 4.116 29 C -0.031 4.031 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.107 0.893 39 H 0.270 0.730 40 H 0.046 0.954 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 17.752 -6.721 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.077 5.077 4 N -0.126 5.126 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.064 4.064 8 C -0.123 4.123 9 H 0.123 0.877 10 C 0.309 3.691 11 O -0.429 6.429 12 N -0.332 5.332 13 C -0.040 4.040 14 C -0.017 4.017 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.457 6.457 18 C -0.581 4.581 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.394 5.394 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.017 4.017 27 C -0.024 4.024 28 C -0.154 4.154 29 C -0.070 4.070 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.243 18.276 -7.160 22.141 hybrid contribution 0.402 -0.684 0.662 1.033 sum -9.842 17.592 -6.498 21.179 Atomic orbital electron populations 1.22296 0.72716 1.06033 1.05176 1.46824 1.09199 1.04598 1.47015 1.78586 0.96141 1.11273 1.21742 1.74797 1.09578 1.11967 1.16217 1.21705 0.95007 0.91350 1.07930 1.21824 0.91262 0.92230 1.09592 1.19916 0.97599 0.84588 1.04283 1.21299 0.96402 0.91826 1.02796 0.87723 1.20316 0.82965 0.87438 0.78422 1.90667 1.26597 1.82056 1.43531 1.48063 1.23134 1.07248 1.54790 1.22574 0.87293 0.99573 0.94541 1.21890 1.03053 0.82795 0.93984 1.48190 1.24039 1.05835 1.60102 1.18294 0.81621 0.83760 0.79829 1.90604 1.76262 1.18316 1.60551 1.20938 1.10959 0.93995 1.32217 0.90857 1.25732 0.97826 0.94427 0.95266 1.69997 1.33764 1.00701 1.34972 0.86383 0.80769 0.79293 0.80426 1.19722 1.20416 1.18772 1.21494 0.88800 1.00589 0.90836 1.22110 1.02696 0.79157 0.98475 1.21759 0.96932 0.96438 1.00280 1.19958 0.92546 0.91006 1.03473 0.88907 0.87931 0.88141 0.88383 0.89604 0.90434 0.89303 0.93428 0.87551 0.91951 0.93561 0.88584 0.88943 0.91162 0.90613 0.89200 0.89344 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.27 59.85 0.67 1.04 16 2 N -0.28 -2.74 3.73 -64.01 -0.24 -2.98 16 3 N -0.10 -1.26 13.19 60.35 0.80 -0.46 16 4 N -0.26 -3.52 12.40 33.16 0.41 -3.11 16 5 C -0.02 -0.22 7.11 -83.12 -0.59 -0.81 16 6 C -0.01 -0.15 6.76 -82.50 -0.56 -0.71 16 7 C -0.02 -0.21 4.75 -27.74 -0.13 -0.34 16 8 C -0.10 -0.93 1.65 -91.49 -0.15 -1.08 16 9 H 0.10 0.86 7.18 -51.93 -0.37 0.49 16 10 C 0.52 6.53 7.00 -10.98 -0.08 6.45 16 11 O -0.55 -8.47 15.18 5.56 0.08 -8.38 16 12 N -0.60 -8.00 2.94 -172.22 -0.51 -8.50 16 13 C 0.08 1.02 5.10 -3.37 -0.02 1.00 16 14 C 0.11 1.71 6.50 -3.37 -0.02 1.69 16 15 N -0.64 -13.30 2.95 -173.88 -0.51 -13.81 16 16 C 0.56 14.82 7.62 -12.99 -0.10 14.72 16 17 O -0.58 -17.68 14.46 5.20 0.08 -17.60 16 18 C -0.54 -14.14 8.86 -35.63 -0.32 -14.46 16 19 H 0.07 1.69 5.67 -52.49 -0.30 1.39 16 20 C 0.09 2.31 5.50 -17.37 -0.10 2.21 16 21 N -0.77 -21.94 11.84 55.55 0.66 -21.29 16 22 Si 0.91 18.92 29.56 -169.99 -5.02 13.89 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 C 0.11 1.97 6.59 -3.60 -0.02 1.95 16 27 C 0.10 1.51 6.59 -3.60 -0.02 1.49 16 28 C -0.12 -0.93 4.71 -26.46 -0.12 -1.06 16 29 C -0.03 -0.25 6.30 -27.71 -0.17 -0.43 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.30 7.96 -51.93 -0.41 -0.12 16 33 H 0.10 0.90 7.67 -51.93 -0.40 0.51 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.77 4.97 -51.93 -0.26 0.51 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.73 5.34 -51.93 -0.28 1.45 16 39 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.97 7.00 -51.93 -0.36 1.61 16 42 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.09 0.68 5.95 -51.93 -0.31 0.37 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -37.02 372.30 -6.79 -43.81 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.41 Total: 1.16 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -1.73 Total: 11.67 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.61 Total: -50.15 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.16 Total: -25.99 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.02 -6.79 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645915583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.441 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds