Wall clock time and date at job start Wed Apr 1 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29109 * 126.00676 * 2 1 4 4 N 1.29024 * 110.25583 * 180.09472 * 3 2 1 5 5 C 1.32902 * 108.63610 * 0.02562 * 4 3 2 6 6 C 1.34399 * 126.00724 * 180.02562 * 2 1 3 7 7 C 1.50531 * 129.25554 * 359.80648 * 6 2 1 8 8 C 1.53438 * 108.32603 * 196.49935 * 7 6 2 9 9 H 1.09002 * 109.45330 * 70.30171 * 8 7 6 10 10 C 1.50703 * 109.44250 * 190.25658 * 8 7 6 11 11 O 1.21282 * 120.00044 * 6.95367 * 10 8 7 12 12 N 1.34781 * 119.99694 * 186.95024 * 10 8 7 13 13 C 1.46961 * 120.59286 * 3.17092 * 12 10 8 14 14 C 1.53812 * 108.39962 * 124.75508 * 13 12 10 15 15 N 1.46961 * 108.57938 * 49.63607 * 14 13 12 16 16 C 1.34772 * 120.59636 * 124.66830 * 15 14 13 17 17 O 1.21689 * 120.00198 * 185.15737 * 16 15 14 18 18 C 1.46371 * 120.00010 * 5.15645 * 16 15 14 19 19 H 1.07996 * 120.00029 * 354.93577 * 18 16 15 20 20 C 1.40054 * 120.00204 * 174.93177 * 18 16 15 21 21 N 1.30669 * 120.00137 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 120.00127 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47092 * 89.99804 * 22 20 18 24 24 H 1.48505 * 109.46699 * 209.99902 * 22 20 18 25 25 H 1.48494 * 109.46912 * 329.99630 * 22 20 18 26 26 C 1.46966 * 118.81032 * 304.64525 * 15 14 13 27 27 C 1.46960 * 120.59160 * 183.44067 * 12 10 8 28 28 C 1.53103 * 109.55456 * 310.27473 * 8 7 6 29 29 C 1.50604 * 129.16271 * 179.88980 * 5 4 3 30 30 H 1.09000 * 109.46870 * 269.97395 * 1 2 3 31 31 H 1.09001 * 109.47189 * 29.97333 * 1 2 3 32 32 H 1.08996 * 109.47220 * 149.97595 * 1 2 3 33 33 H 1.09002 * 109.69200 * 76.79400 * 7 6 2 34 34 H 1.09005 * 109.72909 * 316.23406 * 7 6 2 35 35 H 1.09003 * 109.60863 * 244.53946 * 13 12 10 36 36 H 1.09004 * 109.61428 * 5.04298 * 13 12 10 37 37 H 1.09000 * 109.74229 * 289.84474 * 14 13 12 38 38 H 1.09000 * 109.53051 * 169.29830 * 14 13 12 39 39 H 0.96994 * 120.00491 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.61084 * 295.48171 * 26 15 14 41 41 H 1.08997 * 109.75146 * 175.05569 * 26 15 14 42 42 H 1.09001 * 109.61141 * 354.95597 * 27 12 10 43 43 H 1.09000 * 109.60609 * 115.46268 * 27 12 10 44 44 H 1.08997 * 109.45621 * 310.01902 * 28 8 7 45 45 H 1.09002 * 109.44971 * 190.07812 * 28 8 7 46 46 H 1.08996 * 109.69067 * 76.82942 * 29 5 4 47 47 H 1.09003 * 109.69049 * 316.25161 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0020 5 6 3.5327 -0.6332 -0.0039 6 6 2.2551 -1.0872 -0.0005 7 6 1.8722 -2.5430 0.0028 8 6 3.1012 -3.3642 0.4144 9 1 3.3135 -3.1956 1.4702 10 6 2.8261 -4.8281 0.1851 11 8 1.8088 -5.1730 -0.3778 12 7 3.7108 -5.7539 0.6056 13 6 4.9137 -5.3553 1.3500 14 6 4.9403 -6.1283 2.6794 15 7 4.7224 -7.5539 2.3966 16 6 5.6070 -8.4797 2.8170 17 8 5.4661 -9.6453 2.4973 18 6 6.7373 -8.0831 3.6583 19 1 6.9092 -7.0391 3.8747 20 6 7.5958 -9.0575 4.1828 21 7 7.3875 -10.3207 3.9215 22 14 9.0378 -8.5513 5.2570 23 1 8.6091 -8.5197 6.6784 24 1 10.1431 -9.5298 5.0949 25 1 9.5075 -7.2023 4.8515 26 6 3.5224 -7.9520 1.6474 27 6 3.4928 -7.1795 0.3228 28 6 4.3085 -2.9348 -0.4236 29 6 4.7468 -1.5243 -0.0089 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.5493 -2.8401 -0.9950 34 1 1.0639 -2.7093 0.7150 35 1 5.8019 -5.5961 0.7658 36 1 4.8828 -4.2839 1.5485 37 1 4.1510 -5.7606 3.3350 38 1 5.9098 -5.9946 3.1593 39 1 7.9822 -10.9955 4.2844 40 1 2.6320 -7.7141 2.2296 41 1 3.5523 -9.0227 1.4458 42 1 2.5234 -7.3131 -0.1571 43 1 4.2822 -7.5472 -0.3328 44 1 4.0363 -2.9346 -1.4790 45 1 5.1299 -3.6326 -0.2609 46 1 5.1844 -1.5544 0.9889 47 1 5.4793 -1.1430 -0.7204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645915583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:52 Heat of formation + Delta-G solvation = 10.906668 kcal Electronic energy + Delta-G solvation = -31105.219979 eV Core-core repulsion = 26903.305804 eV Total energy + Delta-G solvation = -4201.914175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.41646 -41.53245 -39.76927 -37.77942 -37.43762 -35.85814 -34.80391 -34.41641 -32.68887 -31.53210 -31.20518 -29.09534 -28.71116 -27.83293 -25.78939 -24.46348 -24.42272 -23.25334 -22.36698 -21.61845 -20.65760 -19.82324 -18.80610 -18.02018 -17.95634 -17.69236 -17.33406 -16.97319 -16.36916 -16.18012 -15.89356 -15.68362 -15.53490 -15.03542 -14.97812 -14.82215 -14.68037 -14.43626 -14.15323 -14.02860 -13.67183 -13.52892 -13.38014 -13.14177 -13.12383 -13.00788 -12.75155 -12.70593 -12.58574 -12.29551 -12.27304 -12.08273 -11.96332 -11.91252 -11.89539 -11.53554 -10.92553 -10.90281 -10.73035 -10.02599 -9.84797 -9.75281 -8.95762 -8.25865 -6.80042 0.55287 1.44119 1.45349 1.45765 1.49884 1.58237 1.61024 1.90686 2.27482 2.49940 2.85061 3.11532 3.33733 3.62495 3.66431 3.75377 3.79323 3.86353 3.98943 4.00938 4.10712 4.22460 4.26010 4.27957 4.37083 4.45753 4.51436 4.52433 4.58183 4.61511 4.68252 4.73887 4.81190 4.90757 4.91117 4.92525 5.04763 5.09815 5.13520 5.22376 5.35727 5.39342 5.46758 5.63455 5.76182 6.16368 6.34044 6.45538 6.92141 7.11299 7.43968 7.47058 8.49510 8.70473 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002524 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.974182 B =11092.207842 C =12215.239107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.129 5.129 4 N -0.299 5.299 5 C -0.031 4.031 6 C -0.014 4.014 7 C -0.017 4.017 8 C -0.094 4.094 9 H 0.125 0.875 10 C 0.525 3.475 11 O -0.578 6.578 12 N -0.602 5.602 13 C 0.093 3.907 14 C 0.100 3.900 15 N -0.645 5.645 16 C 0.541 3.459 17 O -0.633 6.633 18 C -0.563 4.563 19 H 0.102 0.898 20 C 0.028 3.972 21 N -0.825 5.825 22 Si 0.993 3.007 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.240 1.240 26 C 0.110 3.890 27 C 0.113 3.887 28 C -0.109 4.109 29 C -0.027 4.027 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.272 0.728 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 20.473 -6.033 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.070 5.070 3 N -0.107 5.107 4 N -0.162 5.162 5 C -0.172 4.172 6 C -0.149 4.149 7 C -0.056 4.056 8 C -0.116 4.116 9 H 0.143 0.857 10 C 0.315 3.685 11 O -0.458 6.458 12 N -0.334 5.334 13 C -0.030 4.030 14 C -0.023 4.023 15 N -0.382 5.382 16 C 0.348 3.652 17 O -0.520 6.520 18 C -0.600 4.600 19 H 0.120 0.880 20 C -0.186 4.186 21 N -0.455 5.455 22 Si 0.813 3.187 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.163 1.163 26 C -0.015 4.015 27 C -0.012 4.012 28 C -0.147 4.147 29 C -0.066 4.066 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.946 21.104 -6.487 24.216 hybrid contribution 0.123 -1.518 0.401 1.575 sum -9.823 19.586 -6.086 22.741 Atomic orbital electron populations 1.22733 0.70198 1.07589 1.06829 1.47202 1.10649 1.03932 1.45255 1.78508 0.96426 1.12457 1.23302 1.74747 1.10297 1.13449 1.17717 1.22226 0.96482 0.90947 1.07578 1.21979 0.91077 0.92646 1.09185 1.19874 0.97736 0.83624 1.04401 1.21312 0.97104 0.88969 1.04191 0.85735 1.20849 0.81964 0.88465 0.77243 1.90665 1.27792 1.82711 1.44630 1.48083 1.23851 1.06307 1.55184 1.22611 0.86796 1.01379 0.92187 1.22172 1.03483 0.80089 0.96571 1.48026 1.23447 1.07392 1.59332 1.18715 0.82796 0.83778 0.79923 1.90556 1.77897 1.21012 1.62574 1.21504 1.10972 0.95574 1.31902 0.87998 1.26988 1.01106 0.94065 0.96488 1.70192 1.35639 1.02551 1.37083 0.85081 0.76024 0.79680 0.77957 1.18997 1.20564 1.16294 1.21500 0.88205 0.99354 0.92445 1.21775 1.02713 0.80441 0.96224 1.21723 0.96630 0.96537 0.99819 1.20044 0.91693 0.90237 1.04616 0.87151 0.86852 0.86246 0.88824 0.88458 0.90380 0.84816 0.91762 0.87831 0.91785 0.92649 0.91841 0.88468 0.91935 0.91096 0.88120 0.87703 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.27 127.77 1.44 1.89 16 2 N -0.28 -4.82 3.73 -356.42 -1.33 -6.15 16 3 N -0.13 -3.14 13.19 37.02 0.49 -2.65 16 4 N -0.30 -7.73 12.40 -48.99 -0.61 -8.34 16 5 C -0.03 -0.62 7.11 41.75 0.30 -0.32 16 6 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.24 4.75 29.94 0.14 -0.10 16 8 C -0.09 -1.36 1.65 -11.36 -0.02 -1.38 16 9 H 0.12 1.39 7.18 -2.39 -0.02 1.38 16 10 C 0.53 11.59 7.00 87.66 0.61 12.20 16 11 O -0.58 -16.52 15.18 -3.04 -0.05 -16.56 16 12 N -0.60 -14.51 2.94 -817.16 -2.40 -16.92 16 13 C 0.09 1.93 5.10 86.57 0.44 2.37 16 14 C 0.10 2.92 6.50 86.57 0.56 3.49 16 15 N -0.65 -26.64 2.95 -822.26 -2.42 -29.07 16 16 C 0.54 29.45 7.62 86.36 0.66 30.11 16 17 O -0.63 -40.95 14.46 -4.31 -0.06 -41.02 16 18 C -0.56 -29.20 8.86 24.83 0.22 -28.98 16 19 H 0.10 4.50 5.67 -2.91 -0.02 4.48 16 20 C 0.03 1.50 5.50 85.31 0.47 1.97 16 21 N -0.82 -48.86 11.84 21.84 0.26 -48.60 16 22 Si 0.99 38.24 29.56 68.60 2.03 40.27 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 24 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 26 C 0.11 4.08 6.59 86.41 0.57 4.65 16 27 C 0.11 3.38 6.59 86.42 0.57 3.95 16 28 C -0.11 -1.35 4.71 30.77 0.14 -1.21 16 29 C -0.03 -0.36 6.30 29.96 0.19 -0.17 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.37 7.96 -2.39 -0.02 0.35 16 33 H 0.09 1.48 7.67 -2.39 -0.02 1.46 16 34 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.13 1.61 4.97 -2.39 -0.01 1.59 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 3.08 5.34 -2.39 -0.01 3.07 16 39 H 0.27 14.72 8.29 -92.71 -0.77 13.95 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 2.77 7.00 -2.39 -0.02 2.75 16 42 H 0.10 2.85 6.99 -2.39 -0.02 2.83 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 45 H 0.10 1.07 5.95 -2.39 -0.01 1.06 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -85.34 372.30 3.50 -81.84 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.01 Total: 18.65 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 6.58 Total: 28.53 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -6.02 Total: -111.72 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -0.11 Total: -57.58 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -85.34 3.50 -81.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645915583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.751 kcal (2) G-P(sol) polarization free energy of solvation -85.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds