Wall clock time and date at job start Wed Apr 1 2020 06:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 113.99870 * 2 1 4 4 C 1.52997 * 109.47216 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46741 * 185.26162 * 4 3 2 6 6 C 1.37532 * 127.17520 * 275.99683 * 5 4 3 7 7 C 1.47882 * 126.47510 * 359.97438 * 6 5 4 8 8 C 1.35787 * 126.39657 * 180.30845 * 7 6 5 9 9 O 1.34651 * 106.94657 * 179.97438 * 8 7 6 10 10 C 1.33955 * 108.13129 * 0.02562 * 9 8 7 11 11 N 1.30086 * 109.17650 * 359.75563 * 10 9 8 12 12 N 1.31254 * 107.04405 * 180.26692 * 6 5 4 13 13 N 1.28506 * 109.95390 * 359.74165 * 12 6 5 14 14 C 1.31260 * 110.10749 * 359.97438 * 13 12 6 15 15 N 1.38538 * 126.37582 * 180.02562 * 14 13 12 16 16 C 1.46848 * 110.99589 * 101.03991 * 15 14 13 17 17 C 1.53044 * 109.51730 * 174.16194 * 16 15 14 18 18 C 1.53117 * 109.28033 * 59.17917 * 17 16 15 19 19 C 1.53118 * 109.15847 * 302.34371 * 18 17 16 20 20 H 1.08996 * 109.50670 * 297.67078 * 19 18 17 21 21 C 1.50709 * 109.49869 * 177.59464 * 19 18 17 22 22 H 1.08001 * 119.99944 * 240.07600 * 21 19 18 23 23 C 1.37876 * 119.99737 * 60.35965 * 21 19 18 24 24 N 1.31510 * 120.00167 * 359.71821 * 23 21 19 25 25 Si 1.86804 * 119.99806 * 179.72314 * 23 21 19 26 26 H 1.48507 * 109.46854 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47092 * 119.99742 * 25 23 21 28 28 H 1.48503 * 109.47135 * 240.00019 * 25 23 21 29 29 C 1.46847 * 110.99482 * 336.78870 * 15 14 13 30 30 H 1.09002 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47219 * 299.99476 * 1 2 3 32 32 H 1.08997 * 109.47242 * 60.00530 * 1 2 3 33 33 H 1.09003 * 109.46743 * 60.00156 * 3 2 1 34 34 H 1.08996 * 109.46867 * 300.00127 * 3 2 1 35 35 H 1.08992 * 109.47183 * 65.25916 * 4 3 2 36 36 H 1.09001 * 109.47239 * 305.25943 * 4 3 2 37 37 H 1.08004 * 126.52530 * 359.93904 * 8 7 6 38 38 H 1.07990 * 125.41266 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.46458 * 54.15058 * 16 15 14 40 40 H 1.08997 * 109.46028 * 294.17063 * 16 15 14 41 41 H 1.09000 * 109.50222 * 299.23693 * 17 16 15 42 42 H 1.09000 * 109.50337 * 179.12335 * 17 16 15 43 43 H 1.09002 * 109.52402 * 182.44240 * 18 17 16 44 44 H 1.09001 * 109.57542 * 62.28136 * 18 17 16 45 45 H 0.97004 * 119.99907 * 180.02562 * 24 23 21 46 46 H 1.08998 * 109.43200 * 65.80903 * 29 15 14 47 47 H 1.08999 * 109.49552 * 305.83709 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1306 2.5175 0.1273 6 6 4.3720 3.4193 -0.8827 7 6 4.0787 3.2292 -2.3196 8 6 4.3230 4.1184 -3.3163 9 8 3.9059 3.5478 -4.4623 10 6 3.4166 2.3355 -4.1704 11 7 3.5188 2.1304 -2.8899 12 7 4.9177 4.4779 -0.3309 13 7 5.0273 4.3040 0.9376 14 6 4.5583 3.1250 1.2736 15 7 4.5115 2.5932 2.5520 16 6 3.1627 2.7093 3.1211 17 6 3.1122 1.9850 4.4684 18 6 4.1414 2.6074 5.4159 19 6 5.5306 2.5170 4.7782 20 1 5.7995 1.4701 4.6385 21 6 6.5413 3.1803 5.6781 22 1 7.1144 4.0221 5.3184 23 6 6.7385 2.7088 6.9586 24 7 6.0407 1.6838 7.3967 25 14 7.9968 3.5261 8.0715 26 1 8.6439 4.6488 7.3461 27 1 7.3195 4.0460 9.2863 28 1 9.0277 2.5327 8.4662 29 6 5.5118 3.2252 3.4217 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8640 0.7272 -0.9324 36 1 3.8504 0.5649 0.8400 37 1 4.7669 5.0973 -3.2099 38 1 3.0061 1.6376 -4.8850 39 1 2.4410 2.2591 2.4396 40 1 2.9187 3.7617 3.2652 41 1 3.3427 0.9296 4.3231 42 1 2.1153 2.0845 4.8978 43 1 4.1392 2.0666 6.3622 44 1 3.8893 3.6529 5.5932 45 1 6.1791 1.3523 8.2977 46 1 5.2571 4.2754 3.5638 47 1 6.4958 3.1497 2.9589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646819798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:31 Heat of formation + Delta-G solvation = 72.316520 kcal Electronic energy + Delta-G solvation = -31326.871008 eV Core-core repulsion = 27127.619764 eV Total energy + Delta-G solvation = -4199.251244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.68789 -42.76088 -38.43467 -38.20317 -35.57332 -34.93894 -33.83814 -32.15292 -31.17368 -30.02955 -29.91603 -28.42016 -26.58714 -25.11066 -24.26390 -23.98165 -23.35371 -22.97305 -21.69825 -20.82944 -20.47561 -18.74931 -18.24328 -17.39271 -17.00830 -16.71312 -16.35772 -16.21719 -15.85316 -15.60878 -15.56526 -14.96323 -14.81335 -14.50975 -14.08058 -13.89539 -13.74809 -13.36478 -12.96453 -12.61351 -12.58090 -12.51246 -12.05491 -11.88868 -11.73686 -11.61242 -11.45223 -11.09995 -10.97363 -10.83604 -10.70791 -10.50713 -10.26855 -10.20959 -10.02132 -9.91787 -9.86055 -9.59221 -9.26284 -8.98009 -8.71764 -8.33758 -7.93310 -6.00633 -4.06220 0.83829 1.57570 2.08659 2.40648 2.45548 3.10957 3.30993 3.38444 3.39202 3.44051 3.54759 4.09596 4.34759 4.46016 4.47858 4.62666 4.71679 4.95402 5.06091 5.11837 5.14393 5.16591 5.29634 5.33419 5.35350 5.39936 5.40782 5.53438 5.55839 5.74236 5.77945 5.85516 5.96697 6.12836 6.32404 6.34874 6.49602 6.58562 6.68902 6.81521 6.84500 6.99855 7.19175 7.24475 7.34510 7.61490 7.73336 7.98285 8.09278 8.40976 8.78175 8.97366 9.58560 11.05811 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002937 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.847481 B = 9530.781959 C =11080.419835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.055 3.945 4 C 0.117 3.883 5 N -0.460 5.460 6 C 0.232 3.768 7 C 0.055 3.945 8 C -0.010 4.010 9 O -0.200 6.200 10 C 0.183 3.817 11 N -0.478 5.478 12 N -0.262 5.262 13 N -0.311 5.311 14 C 0.386 3.614 15 N -0.460 5.460 16 C 0.067 3.933 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.055 3.945 20 H 0.036 0.964 21 C -0.513 4.513 22 H 0.058 0.942 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.272 1.272 27 H -0.285 1.285 28 H -0.284 1.284 29 C 0.082 3.918 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.230 0.770 38 H 0.254 0.746 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.036 0.964 45 H 0.260 0.740 46 H 0.046 0.954 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -1.696 -21.855 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.022 4.022 4 C -0.006 4.006 5 N -0.155 5.155 6 C -0.033 4.033 7 C -0.064 4.064 8 C -0.084 4.084 9 O -0.085 6.085 10 C -0.045 4.045 11 N -0.208 5.208 12 N -0.105 5.105 13 N -0.156 5.156 14 C 0.031 3.969 15 N -0.185 5.185 16 C -0.059 4.059 17 C -0.154 4.154 18 C -0.152 4.152 19 C 0.036 3.964 20 H 0.054 0.946 21 C -0.551 4.551 22 H 0.076 0.924 23 C -0.138 4.138 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.043 4.043 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.247 0.753 38 H 0.270 0.730 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.171 -1.698 -21.252 24.069 hybrid contribution -0.138 0.515 0.246 0.587 sum -11.309 -1.184 -21.005 23.885 Atomic orbital electron populations 1.22755 0.80405 1.02976 1.00075 1.87816 1.20109 1.26565 1.95471 1.22727 0.93034 0.85576 1.00912 1.21598 0.92033 0.80395 1.06570 1.46060 1.47762 1.15533 1.06151 1.20942 1.05767 0.89170 0.87410 1.18415 1.05835 0.92271 0.89894 1.25101 1.01722 1.00386 0.81207 1.84518 1.59895 1.29046 1.35073 1.28043 0.98260 0.85058 0.93183 1.70682 1.17689 1.25216 1.07196 1.74277 1.15276 1.19349 1.01614 1.74755 1.23546 1.12371 1.04933 1.22916 0.97629 0.88130 0.88263 1.58873 1.08375 1.54510 0.96692 1.22289 0.86425 0.99865 0.97372 1.21719 0.99941 1.00295 0.93429 1.21719 0.94378 0.98909 1.00175 1.18744 0.93303 0.96563 0.87784 0.94553 1.21122 1.20744 1.15597 0.97668 0.92395 1.24914 0.96030 0.94886 0.97929 1.69888 1.40547 1.24753 1.17579 0.86534 0.81404 0.79489 0.80589 1.19691 1.21071 1.21060 1.22442 0.91421 0.96805 0.93598 0.89217 0.93867 0.94121 0.92961 0.92423 0.87011 0.87079 0.75347 0.73021 0.92215 0.93931 0.91600 0.92554 0.88568 0.94552 0.93053 0.93552 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.50 10.70 -35.23 -0.38 -4.88 16 3 C 0.06 0.67 6.21 37.16 0.23 0.90 16 4 C 0.12 1.57 5.98 -4.04 -0.02 1.54 16 5 N -0.46 -7.25 2.83 -114.63 -0.32 -7.58 16 6 C 0.23 3.58 7.93 -153.79 -1.22 2.36 16 7 C 0.06 0.67 6.96 -83.01 -0.58 0.09 16 8 C -0.01 -0.09 12.14 29.85 0.36 0.27 16 9 O -0.20 -1.54 10.74 5.68 0.06 -1.48 16 10 C 0.18 1.22 13.20 52.02 0.69 1.91 16 11 N -0.48 -4.99 9.66 -11.45 -0.11 -5.10 16 12 N -0.26 -4.65 12.20 32.59 0.40 -4.25 16 13 N -0.31 -6.16 11.47 30.34 0.35 -5.81 16 14 C 0.39 7.12 6.85 -318.68 -2.18 4.94 16 15 N -0.46 -8.77 4.63 -174.51 -0.81 -9.57 16 16 C 0.07 1.16 5.40 -3.83 -0.02 1.14 16 17 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 18 C -0.11 -2.57 5.03 -26.61 -0.13 -2.71 16 19 C 0.06 1.34 2.26 -91.69 -0.21 1.14 16 20 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 23 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 24 N -0.89 -24.79 11.36 55.43 0.63 -24.16 16 25 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.08 1.81 4.15 -3.83 -0.02 1.79 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.66 5.81 -51.93 -0.30 0.36 16 34 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 35 H 0.11 1.43 7.00 -51.93 -0.36 1.07 16 36 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 37 H 0.23 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.25 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.06 0.91 5.63 -51.93 -0.29 0.61 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 47 H 0.07 1.57 8.10 -51.93 -0.42 1.15 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -32.16 385.79 -8.66 -40.82 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.73 Total: 0.08 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.54 Total: -0.04 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.13 Total: -56.47 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.32 Total: -6.36 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.16 -8.66 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.139 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds