Wall clock time and date at job start Wed Apr 1 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 113.99870 * 2 1 4 4 C 1.52997 * 109.47216 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46741 * 185.26162 * 4 3 2 6 6 C 1.37532 * 127.17520 * 275.99683 * 5 4 3 7 7 C 1.47882 * 126.47510 * 359.97438 * 6 5 4 8 8 C 1.35787 * 126.39657 * 180.30845 * 7 6 5 9 9 O 1.34651 * 106.94657 * 179.97438 * 8 7 6 10 10 C 1.33955 * 108.13129 * 0.02562 * 9 8 7 11 11 N 1.30086 * 109.17650 * 359.75563 * 10 9 8 12 12 N 1.31254 * 107.04405 * 180.26692 * 6 5 4 13 13 N 1.28506 * 109.95390 * 359.74165 * 12 6 5 14 14 C 1.31260 * 110.10749 * 359.97438 * 13 12 6 15 15 N 1.38538 * 126.37582 * 180.02562 * 14 13 12 16 16 C 1.46848 * 110.99589 * 101.03991 * 15 14 13 17 17 C 1.53044 * 109.51730 * 174.16194 * 16 15 14 18 18 C 1.53117 * 109.28033 * 59.17917 * 17 16 15 19 19 C 1.53118 * 109.15847 * 302.34371 * 18 17 16 20 20 H 1.08996 * 109.50670 * 297.67078 * 19 18 17 21 21 C 1.50709 * 109.49869 * 177.59464 * 19 18 17 22 22 H 1.08001 * 119.99944 * 240.07600 * 21 19 18 23 23 C 1.37876 * 119.99737 * 60.35965 * 21 19 18 24 24 N 1.31510 * 120.00167 * 359.71821 * 23 21 19 25 25 Si 1.86804 * 119.99806 * 179.72314 * 23 21 19 26 26 H 1.48507 * 109.46854 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47092 * 119.99742 * 25 23 21 28 28 H 1.48503 * 109.47135 * 240.00019 * 25 23 21 29 29 C 1.46847 * 110.99482 * 336.78870 * 15 14 13 30 30 H 1.09002 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47219 * 299.99476 * 1 2 3 32 32 H 1.08997 * 109.47242 * 60.00530 * 1 2 3 33 33 H 1.09003 * 109.46743 * 60.00156 * 3 2 1 34 34 H 1.08996 * 109.46867 * 300.00127 * 3 2 1 35 35 H 1.08992 * 109.47183 * 65.25916 * 4 3 2 36 36 H 1.09001 * 109.47239 * 305.25943 * 4 3 2 37 37 H 1.08004 * 126.52530 * 359.93904 * 8 7 6 38 38 H 1.07990 * 125.41266 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.46458 * 54.15058 * 16 15 14 40 40 H 1.08997 * 109.46028 * 294.17063 * 16 15 14 41 41 H 1.09000 * 109.50222 * 299.23693 * 17 16 15 42 42 H 1.09000 * 109.50337 * 179.12335 * 17 16 15 43 43 H 1.09002 * 109.52402 * 182.44240 * 18 17 16 44 44 H 1.09001 * 109.57542 * 62.28136 * 18 17 16 45 45 H 0.97004 * 119.99907 * 180.02562 * 24 23 21 46 46 H 1.08998 * 109.43200 * 65.80903 * 29 15 14 47 47 H 1.08999 * 109.49552 * 305.83709 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1306 2.5175 0.1273 6 6 4.3720 3.4193 -0.8827 7 6 4.0787 3.2292 -2.3196 8 6 4.3230 4.1184 -3.3163 9 8 3.9059 3.5478 -4.4623 10 6 3.4166 2.3355 -4.1704 11 7 3.5188 2.1304 -2.8899 12 7 4.9177 4.4779 -0.3309 13 7 5.0273 4.3040 0.9376 14 6 4.5583 3.1250 1.2736 15 7 4.5115 2.5932 2.5520 16 6 3.1627 2.7093 3.1211 17 6 3.1122 1.9850 4.4684 18 6 4.1414 2.6074 5.4159 19 6 5.5306 2.5170 4.7782 20 1 5.7995 1.4701 4.6385 21 6 6.5413 3.1803 5.6781 22 1 7.1144 4.0221 5.3184 23 6 6.7385 2.7088 6.9586 24 7 6.0407 1.6838 7.3967 25 14 7.9968 3.5261 8.0715 26 1 8.6439 4.6488 7.3461 27 1 7.3195 4.0460 9.2863 28 1 9.0277 2.5327 8.4662 29 6 5.5118 3.2252 3.4217 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8640 0.7272 -0.9324 36 1 3.8504 0.5649 0.8400 37 1 4.7669 5.0973 -3.2099 38 1 3.0061 1.6376 -4.8850 39 1 2.4410 2.2591 2.4396 40 1 2.9187 3.7617 3.2652 41 1 3.3427 0.9296 4.3231 42 1 2.1153 2.0845 4.8978 43 1 4.1392 2.0666 6.3622 44 1 3.8893 3.6529 5.5932 45 1 6.1791 1.3523 8.2977 46 1 5.2571 4.2754 3.5638 47 1 6.4958 3.1497 2.9589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646819798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:29 Heat of formation + Delta-G solvation = 51.393675 kcal Electronic energy + Delta-G solvation = -31327.778290 eV Core-core repulsion = 27127.619764 eV Total energy + Delta-G solvation = -4200.158526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.45003 -43.97335 -40.02900 -39.10901 -36.55693 -36.09186 -35.44674 -33.79182 -32.19687 -31.86353 -30.95956 -29.58424 -27.35499 -27.06976 -25.56565 -25.22894 -24.42377 -23.71577 -23.31409 -22.03974 -21.68577 -20.42403 -19.26501 -18.64057 -18.17164 -17.82590 -17.46212 -17.21089 -17.10138 -16.82128 -16.57161 -16.33188 -15.94664 -15.70493 -15.41801 -15.33530 -14.68410 -14.58963 -14.47832 -14.36116 -14.22624 -13.60099 -13.46101 -12.92316 -12.88700 -12.86022 -12.73755 -12.58538 -12.55318 -12.33625 -11.98710 -11.92282 -11.84626 -11.71643 -11.43727 -11.37344 -11.12385 -11.10332 -10.76729 -10.70585 -10.41066 -10.06864 -9.29522 -8.09888 -6.22769 -0.07125 0.74266 0.88725 1.29982 1.41038 1.43513 1.54959 1.81786 2.00548 2.36321 2.49544 2.59192 2.98139 3.18116 3.43342 3.54260 3.63981 3.77807 3.83420 3.97835 4.04682 4.11758 4.23511 4.29541 4.37396 4.39384 4.46955 4.50355 4.52561 4.60029 4.64495 4.70984 4.74855 4.82826 4.84341 4.89587 4.96482 5.02391 5.16996 5.24098 5.35186 5.50095 5.62891 5.66203 5.97213 6.00450 6.10506 6.13910 6.36836 6.53731 6.86068 7.44724 7.45844 8.95364 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002937 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.847481 B = 9530.781959 C =11080.419835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.069 3.931 4 C 0.119 3.881 5 N -0.457 5.457 6 C 0.255 3.745 7 C 0.013 3.987 8 C 0.015 3.985 9 O -0.195 6.195 10 C 0.210 3.790 11 N -0.509 5.509 12 N -0.291 5.291 13 N -0.343 5.343 14 C 0.369 3.631 15 N -0.460 5.460 16 C 0.071 3.929 17 C -0.105 4.105 18 C -0.106 4.106 19 C 0.057 3.943 20 H 0.006 0.994 21 C -0.536 4.536 22 H 0.048 0.952 23 C 0.020 3.980 24 N -0.910 5.910 25 Si 0.953 3.047 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.280 1.280 29 C 0.104 3.896 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.304 0.696 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.262 0.738 46 H 0.034 0.966 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 -2.093 -24.351 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.009 4.009 4 C -0.003 4.003 5 N -0.151 5.151 6 C -0.011 4.011 7 C -0.105 4.105 8 C -0.061 4.061 9 O -0.080 6.080 10 C -0.018 4.018 11 N -0.238 5.238 12 N -0.132 5.132 13 N -0.188 5.188 14 C 0.012 3.988 15 N -0.184 5.184 16 C -0.055 4.055 17 C -0.143 4.143 18 C -0.144 4.144 19 C 0.038 3.962 20 H 0.024 0.976 21 C -0.575 4.575 22 H 0.067 0.933 23 C -0.179 4.179 24 N -0.550 5.550 25 Si 0.778 3.222 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.206 1.206 29 C -0.023 4.023 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.263 0.737 38 H 0.318 0.682 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.776 -2.103 -23.751 27.051 hybrid contribution 0.299 0.575 0.794 1.025 sum -12.476 -1.528 -22.957 26.173 Atomic orbital electron populations 1.22985 0.78604 1.04405 1.00867 1.87797 1.22049 1.26156 1.95567 1.22507 0.91788 0.85877 1.00724 1.21689 0.93156 0.79064 1.06424 1.46138 1.47506 1.16162 1.05319 1.21532 1.02898 0.87911 0.88757 1.18365 1.09123 0.94368 0.88604 1.25419 0.99487 1.00290 0.80861 1.84583 1.59726 1.29520 1.34183 1.29163 0.95339 0.84588 0.92733 1.70635 1.19130 1.25146 1.08893 1.74191 1.17439 1.20706 1.00907 1.74639 1.24393 1.13483 1.06320 1.22710 0.99156 0.88501 0.88390 1.58772 1.08568 1.54231 0.96868 1.22311 0.86126 0.99738 0.97300 1.21602 0.99994 0.99662 0.93016 1.21509 0.94682 0.98353 0.99880 1.18619 0.93980 0.94595 0.88981 0.97583 1.21424 1.21677 1.15736 0.98669 0.93345 1.25616 0.97724 0.95434 0.99114 1.70001 1.41459 1.25553 1.17944 0.85589 0.79207 0.78567 0.78797 1.19613 1.20309 1.20560 1.21962 0.91669 0.95798 0.92830 0.87550 0.93532 0.92858 0.93602 0.91998 0.86284 0.88088 0.73668 0.68168 0.89490 0.94318 0.91867 0.89529 0.91248 0.95300 0.92862 0.94774 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.61 10.70 -148.98 -1.59 -10.21 16 3 C 0.07 1.55 6.21 71.98 0.45 2.00 16 4 C 0.12 3.10 5.98 86.38 0.52 3.62 16 5 N -0.46 -14.36 2.83 -516.59 -1.46 -15.82 16 6 C 0.25 7.78 7.93 136.24 1.08 8.86 16 7 C 0.01 0.30 6.96 40.51 0.28 0.58 16 8 C 0.01 0.24 12.14 67.25 0.82 1.05 16 9 O -0.20 -2.29 10.74 -2.60 -0.03 -2.32 16 10 C 0.21 1.95 13.20 130.50 1.72 3.67 16 11 N -0.51 -9.26 9.66 -305.03 -2.95 -12.21 16 12 N -0.29 -10.45 12.20 -50.80 -0.62 -11.07 16 13 N -0.34 -14.05 11.47 -57.92 -0.66 -14.71 16 14 C 0.37 13.92 6.85 260.04 1.78 15.70 16 15 N -0.46 -18.01 4.63 -706.02 -3.27 -21.28 16 16 C 0.07 2.44 5.40 86.33 0.47 2.91 16 17 C -0.10 -3.80 6.09 30.65 0.19 -3.62 16 18 C -0.11 -4.94 5.03 30.67 0.15 -4.78 16 19 C 0.06 2.93 2.26 -11.49 -0.03 2.90 16 20 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 21 C -0.54 -30.21 8.56 25.60 0.22 -29.99 16 22 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 23 C 0.02 1.14 5.31 84.66 0.45 1.59 16 24 N -0.91 -51.97 11.36 21.45 0.24 -51.73 16 25 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 C 0.10 4.78 4.15 86.33 0.36 5.13 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.08 5.81 -2.39 -0.01 1.07 16 34 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 35 H 0.12 2.93 7.00 -2.39 -0.02 2.91 16 36 H 0.10 2.84 8.10 -2.39 -0.02 2.82 16 37 H 0.25 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.30 -0.80 8.06 -2.92 -0.02 -0.83 16 39 H 0.09 2.53 5.63 -2.39 -0.01 2.52 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.07 3.61 6.17 -2.39 -0.01 3.60 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 47 H 0.05 2.50 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -72.98 385.79 2.38 -70.61 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.99 Total: 11.25 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 9.70 Total: 11.27 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -8.72 Total: -126.82 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -1.62 Total: -12.53 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -72.98 2.38 -70.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.000 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds