Wall clock time and date at job start Wed Apr 1 2020 05:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46659 * 2 1 4 4 C 1.35720 * 116.99884 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.40328 * 179.97438 * 4 3 2 6 6 N 1.34095 * 107.80246 * 179.97438 * 5 4 3 7 7 C 1.31398 * 108.69860 * 359.97438 * 6 5 4 8 8 C 1.47052 * 125.69397 * 179.97438 * 7 6 5 9 9 N 1.31531 * 126.50402 * 180.02562 * 8 7 6 10 10 N 1.28512 * 109.89955 * 180.02562 * 9 8 7 11 11 C 1.31452 * 110.13951 * 359.97438 * 10 9 8 12 12 N 1.38332 * 126.34316 * 179.97438 * 11 10 9 13 13 C 1.46847 * 111.00115 * 35.89574 * 12 11 10 14 14 C 1.53034 * 109.52392 * 174.16330 * 13 12 11 15 15 C 1.53127 * 109.28042 * 59.17885 * 14 13 12 16 16 C 1.50698 * 109.52145 * 182.44473 * 15 14 13 17 17 H 1.07992 * 120.00266 * 119.68536 * 16 15 14 18 18 C 1.37875 * 119.99717 * 299.67589 * 16 15 14 19 19 N 1.31515 * 120.00416 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46783 * 59.99971 * 20 18 16 22 22 H 1.48498 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46830 * 300.00497 * 20 18 16 24 24 C 1.53117 * 109.15770 * 302.34711 * 15 14 13 25 25 C 1.46855 * 110.99831 * 271.68811 * 12 11 10 26 26 N 1.36459 * 107.31059 * 0.24387 * 11 10 9 27 27 C 1.46506 * 127.16967 * 179.75736 * 26 11 10 28 28 O 1.34760 * 108.61555 * 0.26528 * 7 6 5 29 29 H 1.09006 * 109.46792 * 60.00729 * 1 2 3 30 30 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47808 * 299.99835 * 1 2 3 32 32 H 1.08994 * 109.47321 * 239.99959 * 2 1 3 33 33 H 1.08996 * 109.46895 * 119.99347 * 2 1 3 34 34 H 1.07998 * 126.09422 * 359.97438 * 5 4 3 35 35 H 1.08999 * 109.46069 * 294.17560 * 13 12 11 36 36 H 1.08996 * 109.46194 * 54.14209 * 13 12 11 37 37 H 1.08998 * 109.50386 * 179.12153 * 14 13 12 38 38 H 1.08997 * 109.50263 * 299.24060 * 14 13 12 39 39 H 1.08998 * 109.52111 * 62.25112 * 15 14 13 40 40 H 0.96998 * 120.00228 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.50574 * 297.70992 * 24 15 14 42 42 H 1.09004 * 109.50201 * 177.59578 * 24 15 14 43 43 H 1.08998 * 109.45741 * 305.85688 * 25 12 11 44 44 H 1.09003 * 109.46012 * 65.82176 * 25 12 11 45 45 H 1.09001 * 109.46963 * 95.53404 * 27 26 11 46 46 H 1.09003 * 109.47137 * 215.53467 * 27 26 11 47 47 H 1.09001 * 109.47338 * 335.53726 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3517 1.5252 0.0005 5 6 4.0051 2.7102 0.0002 6 7 5.3211 2.4527 0.0015 7 6 5.4956 1.1504 0.0033 8 6 6.7932 0.4586 0.0046 9 7 6.9862 -0.8425 0.0059 10 7 8.2457 -1.0978 0.0074 11 6 8.9345 0.0218 0.0066 12 7 10.3131 0.1362 0.0082 13 6 10.9305 -0.9282 -0.7932 14 6 12.4386 -0.6870 -0.8889 15 6 13.0383 -0.6701 0.5200 16 6 14.5134 -0.3733 0.4358 17 1 14.9170 0.5013 0.9241 18 6 15.3478 -1.2185 -0.2644 19 7 14.8563 -2.2835 -0.8594 20 14 17.1764 -0.8511 -0.3682 21 1 17.7549 -0.8277 0.9993 22 1 17.8479 -1.9035 -1.1724 23 1 17.3798 0.4704 -1.0144 24 6 12.3446 0.4148 1.3484 25 6 10.8391 0.1416 1.3793 26 7 8.0376 1.0503 0.0100 27 6 8.3357 2.4847 0.0155 28 8 4.2869 0.5545 -0.0029 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.5481 3.6887 -0.0010 35 1 10.7462 -1.8925 -0.3197 36 1 10.4981 -0.9267 -1.7938 37 1 12.8987 -1.4857 -1.4707 38 1 12.6238 0.2709 -1.3747 39 1 12.8875 -1.6410 0.9917 40 1 15.4433 -2.8779 -1.3523 41 1 12.5283 1.3901 0.8977 42 1 12.7374 0.4032 2.3651 43 1 10.3404 0.9202 1.9564 44 1 10.6553 -0.8278 1.8425 45 1 8.3131 2.8644 -1.0060 46 1 7.5906 3.0084 0.6144 47 1 9.3253 2.6485 0.4421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647675644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:02 Heat of formation + Delta-G solvation = 80.681317 kcal Electronic energy + Delta-G solvation = -30151.349374 eV Core-core repulsion = 25952.460855 eV Total energy + Delta-G solvation = -4198.888519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.82253 -42.88795 -39.27683 -38.44157 -35.57696 -34.81859 -34.14320 -32.59607 -31.79021 -30.57630 -29.98688 -28.31687 -27.62865 -25.79650 -24.61515 -23.42369 -23.05054 -22.57435 -22.29626 -21.11584 -20.75145 -19.29549 -18.71011 -17.85831 -17.75647 -16.55936 -16.51604 -16.43688 -16.02186 -15.86077 -15.51595 -14.81299 -14.57853 -14.23062 -13.85143 -13.67933 -13.44606 -13.29091 -13.17231 -12.86974 -12.83806 -12.56278 -12.53220 -12.26277 -11.96662 -11.77765 -11.63636 -11.52779 -11.24618 -11.07087 -10.90608 -10.72435 -10.60379 -10.35653 -10.26913 -10.21668 -9.73252 -9.57307 -9.12488 -8.85251 -8.57886 -8.34367 -8.09482 -6.00774 -4.06777 0.53181 1.26869 1.67994 2.17332 2.26825 2.71958 2.89589 3.31451 3.32050 3.36835 3.38838 3.94463 4.32762 4.33482 4.38741 4.42611 4.64825 4.69368 4.72027 4.98688 5.11233 5.15872 5.18237 5.19384 5.29550 5.36491 5.43582 5.49233 5.57935 5.67526 5.73296 5.79471 5.91306 6.03359 6.15709 6.31620 6.40455 6.43239 6.44981 6.68778 6.83896 6.97422 7.16068 7.26907 7.33703 7.48634 7.72015 7.95235 8.06748 8.41008 8.55607 8.96301 9.58174 11.05569 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035140 B = 0.001916 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.618361 B =14613.781717 C =15069.222581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.254 6.254 4 C 0.165 3.835 5 C -0.052 4.052 6 N -0.433 5.433 7 C 0.271 3.729 8 C 0.227 3.773 9 N -0.239 5.239 10 N -0.306 5.306 11 C 0.391 3.609 12 N -0.462 5.462 13 C 0.071 3.929 14 C -0.105 4.105 15 C 0.046 3.954 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.105 4.105 25 C 0.067 3.933 26 N -0.444 5.444 27 C 0.080 3.920 28 O -0.200 6.200 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.200 0.800 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.425 9.112 1.660 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.167 6.167 4 C 0.067 3.933 5 C -0.193 4.193 6 N -0.164 5.164 7 C 0.066 3.934 8 C -0.038 4.038 9 N -0.086 5.086 10 N -0.153 5.153 11 C 0.036 3.964 12 N -0.188 5.188 13 C -0.055 4.055 14 C -0.143 4.143 15 C 0.027 3.973 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.143 4.143 25 C -0.059 4.059 26 N -0.138 5.138 27 C -0.063 4.063 28 O -0.089 6.089 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.217 0.783 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.117 0.883 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.188 8.490 1.338 26.614 hybrid contribution 0.346 0.175 0.121 0.406 sum -24.842 8.665 1.459 26.350 Atomic orbital electron populations 1.21803 0.91578 1.03633 1.03834 1.23008 0.96685 0.80118 1.03147 1.86491 1.10527 1.30351 1.89374 1.21538 0.81594 0.87126 1.03088 1.22424 0.87015 0.97437 1.12444 1.70691 1.17651 1.11660 1.16417 1.20290 0.81356 0.85129 1.06576 1.19498 0.81811 0.89635 1.12812 1.74539 1.10242 1.08814 1.14982 1.74855 0.97212 1.21649 1.21623 1.22810 0.91226 0.82772 0.99615 1.58931 0.94760 1.49818 1.15298 1.22402 0.97781 0.90251 0.95026 1.21780 0.88216 1.02572 1.01756 1.18726 0.94078 0.93390 0.91073 1.21102 0.92068 1.09375 1.32598 0.92672 1.24965 0.98517 0.94980 0.95455 1.69844 1.35163 1.13627 1.34239 0.86681 0.85498 0.77894 0.78040 1.20359 1.21361 1.20327 1.21737 0.90059 1.01628 1.00862 1.22323 0.98321 1.00396 0.84880 1.45987 1.04257 1.09505 1.54056 1.22247 1.04227 0.74954 1.04833 1.84465 1.15742 1.37231 1.71455 0.91155 0.89625 0.91153 0.90914 0.90922 0.78313 0.93046 0.91963 0.87971 0.93491 0.95530 0.92879 0.92063 0.92123 0.92196 0.93566 0.89683 0.88306 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.28 37.16 0.38 -0.22 16 2 C 0.04 0.29 6.44 37.16 0.24 0.53 16 3 O -0.25 -2.17 10.21 -41.90 -0.43 -2.60 16 4 C 0.17 1.71 7.93 29.69 0.24 1.94 16 5 C -0.05 -0.50 11.91 -17.61 -0.21 -0.71 16 6 N -0.43 -5.15 9.63 -11.68 -0.11 -5.26 16 7 C 0.27 3.69 8.14 -14.17 -0.12 3.58 16 8 C 0.23 3.56 7.98 -153.68 -1.23 2.33 16 9 N -0.24 -4.32 12.24 32.49 0.40 -3.93 16 10 N -0.31 -5.85 11.66 30.31 0.35 -5.50 16 11 C 0.39 6.79 6.70 -318.93 -2.14 4.65 16 12 N -0.46 -8.16 4.62 -174.56 -0.81 -8.97 16 13 C 0.07 1.39 5.08 -3.84 -0.02 1.37 16 14 C -0.10 -2.35 5.12 -26.65 -0.14 -2.48 16 15 C 0.05 1.08 2.16 -91.65 -0.20 0.88 16 16 C -0.51 -13.43 8.56 -34.44 -0.29 -13.73 16 17 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 19 N -0.89 -24.63 11.37 55.43 0.63 -24.00 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.10 -2.01 5.32 -26.65 -0.14 -2.15 16 25 C 0.07 1.15 5.39 -3.83 -0.02 1.13 16 26 N -0.44 -6.61 3.24 -122.21 -0.40 -7.01 16 27 C 0.08 0.87 10.69 59.85 0.64 1.51 16 28 O -0.20 -2.54 10.35 -19.95 -0.21 -2.75 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.10 2.57 6.17 -51.93 -0.32 2.25 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.98 6.97 -51.93 -0.36 0.61 16 47 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -30.18 390.36 -9.78 -39.96 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.98 Total: -1.75 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.10 Total: 0.20 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.07 Total: -54.66 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.63 Total: -5.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.18 -9.78 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647675644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.643 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds