Wall clock time and date at job start Wed Apr 1 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46659 * 2 1 4 4 C 1.35720 * 116.99884 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.40328 * 179.97438 * 4 3 2 6 6 N 1.34095 * 107.80246 * 179.97438 * 5 4 3 7 7 C 1.31398 * 108.69860 * 359.97438 * 6 5 4 8 8 C 1.47052 * 125.69397 * 179.97438 * 7 6 5 9 9 N 1.31531 * 126.50402 * 180.02562 * 8 7 6 10 10 N 1.28512 * 109.89955 * 180.02562 * 9 8 7 11 11 C 1.31452 * 110.13951 * 359.97438 * 10 9 8 12 12 N 1.38332 * 126.34316 * 179.97438 * 11 10 9 13 13 C 1.46847 * 111.00115 * 35.89574 * 12 11 10 14 14 C 1.53034 * 109.52392 * 174.16330 * 13 12 11 15 15 C 1.53127 * 109.28042 * 59.17885 * 14 13 12 16 16 C 1.50698 * 109.52145 * 182.44473 * 15 14 13 17 17 H 1.07992 * 120.00266 * 119.68536 * 16 15 14 18 18 C 1.37875 * 119.99717 * 299.67589 * 16 15 14 19 19 N 1.31515 * 120.00416 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46783 * 59.99971 * 20 18 16 22 22 H 1.48498 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46830 * 300.00497 * 20 18 16 24 24 C 1.53117 * 109.15770 * 302.34711 * 15 14 13 25 25 C 1.46855 * 110.99831 * 271.68811 * 12 11 10 26 26 N 1.36459 * 107.31059 * 0.24387 * 11 10 9 27 27 C 1.46506 * 127.16967 * 179.75736 * 26 11 10 28 28 O 1.34760 * 108.61555 * 0.26528 * 7 6 5 29 29 H 1.09006 * 109.46792 * 60.00729 * 1 2 3 30 30 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47808 * 299.99835 * 1 2 3 32 32 H 1.08994 * 109.47321 * 239.99959 * 2 1 3 33 33 H 1.08996 * 109.46895 * 119.99347 * 2 1 3 34 34 H 1.07998 * 126.09422 * 359.97438 * 5 4 3 35 35 H 1.08999 * 109.46069 * 294.17560 * 13 12 11 36 36 H 1.08996 * 109.46194 * 54.14209 * 13 12 11 37 37 H 1.08998 * 109.50386 * 179.12153 * 14 13 12 38 38 H 1.08997 * 109.50263 * 299.24060 * 14 13 12 39 39 H 1.08998 * 109.52111 * 62.25112 * 15 14 13 40 40 H 0.96998 * 120.00228 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.50574 * 297.70992 * 24 15 14 42 42 H 1.09004 * 109.50201 * 177.59578 * 24 15 14 43 43 H 1.08998 * 109.45741 * 305.85688 * 25 12 11 44 44 H 1.09003 * 109.46012 * 65.82176 * 25 12 11 45 45 H 1.09001 * 109.46963 * 95.53404 * 27 26 11 46 46 H 1.09003 * 109.47137 * 215.53467 * 27 26 11 47 47 H 1.09001 * 109.47338 * 335.53726 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3517 1.5252 0.0005 5 6 4.0051 2.7102 0.0002 6 7 5.3211 2.4527 0.0015 7 6 5.4956 1.1504 0.0033 8 6 6.7932 0.4586 0.0046 9 7 6.9862 -0.8425 0.0059 10 7 8.2457 -1.0978 0.0074 11 6 8.9345 0.0218 0.0066 12 7 10.3131 0.1362 0.0082 13 6 10.9305 -0.9282 -0.7932 14 6 12.4386 -0.6870 -0.8889 15 6 13.0383 -0.6701 0.5200 16 6 14.5134 -0.3733 0.4358 17 1 14.9170 0.5013 0.9241 18 6 15.3478 -1.2185 -0.2644 19 7 14.8563 -2.2835 -0.8594 20 14 17.1764 -0.8511 -0.3682 21 1 17.7549 -0.8277 0.9993 22 1 17.8479 -1.9035 -1.1724 23 1 17.3798 0.4704 -1.0144 24 6 12.3446 0.4148 1.3484 25 6 10.8391 0.1416 1.3793 26 7 8.0376 1.0503 0.0100 27 6 8.3357 2.4847 0.0155 28 8 4.2869 0.5545 -0.0029 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.5481 3.6887 -0.0010 35 1 10.7462 -1.8925 -0.3197 36 1 10.4981 -0.9267 -1.7938 37 1 12.8987 -1.4857 -1.4707 38 1 12.6238 0.2709 -1.3747 39 1 12.8875 -1.6410 0.9917 40 1 15.4433 -2.8779 -1.3523 41 1 12.5283 1.3901 0.8977 42 1 12.7374 0.4032 2.3651 43 1 10.3404 0.9202 1.9564 44 1 10.6553 -0.8278 1.8425 45 1 8.3131 2.8644 -1.0060 46 1 7.5906 3.0084 0.6144 47 1 9.3253 2.6485 0.4421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647675644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:59 Heat of formation + Delta-G solvation = 63.711453 kcal Electronic energy + Delta-G solvation = -30152.085243 eV Core-core repulsion = 25952.460855 eV Total energy + Delta-G solvation = -4199.624388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -44.74261 -44.11934 -40.03657 -39.91059 -36.59483 -36.05648 -35.70079 -33.64417 -33.01293 -31.79886 -31.58761 -29.42564 -28.66647 -27.54949 -25.48293 -24.59483 -24.13531 -23.82982 -23.62194 -22.22215 -22.06584 -20.41747 -20.03393 -18.91747 -18.71943 -18.38321 -17.66188 -17.59446 -17.30033 -16.62568 -16.50993 -16.37849 -15.75885 -15.57168 -15.13776 -14.64601 -14.53460 -14.45468 -14.37876 -14.17796 -13.89134 -13.75959 -13.57026 -13.25238 -13.02364 -12.90498 -12.88436 -12.73376 -12.69041 -12.46246 -12.23189 -12.13999 -12.02986 -11.97079 -11.88411 -11.39384 -11.37572 -11.03002 -10.89870 -10.67730 -10.36429 -9.89777 -9.19909 -8.04134 -6.17060 -0.50195 0.28025 0.65046 1.19583 1.23104 1.46868 1.47108 1.54596 1.73980 1.85438 2.35530 2.47775 2.65036 3.23861 3.50719 3.59677 3.74937 3.86801 3.87531 3.89520 4.00121 4.12377 4.22655 4.29043 4.33243 4.36203 4.47052 4.48722 4.54763 4.68580 4.72889 4.73564 4.78745 4.84919 4.87877 4.97198 5.00694 5.12346 5.16387 5.21573 5.30820 5.54688 5.60925 5.62167 5.72250 5.99136 6.09446 6.16773 6.28624 6.41464 6.94407 7.27825 7.51168 9.00636 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035140 B = 0.001916 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.618361 B =14613.781717 C =15069.222581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.036 3.964 3 O -0.250 6.250 4 C 0.172 3.828 5 C -0.047 4.047 6 N -0.420 5.420 7 C 0.236 3.764 8 C 0.246 3.754 9 N -0.275 5.275 10 N -0.337 5.337 11 C 0.379 3.621 12 N -0.452 5.452 13 C 0.087 3.913 14 C -0.092 4.092 15 C 0.041 3.959 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.270 1.270 24 C -0.094 4.094 25 C 0.073 3.927 26 N -0.437 5.437 27 C 0.075 3.925 28 O -0.212 6.212 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.236 0.764 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.044 0.956 39 H -0.008 1.008 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.032 0.968 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.213 11.876 2.091 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 O -0.164 6.164 4 C 0.073 3.927 5 C -0.189 4.189 6 N -0.152 5.152 7 C 0.033 3.967 8 C -0.020 4.020 9 N -0.121 5.121 10 N -0.184 5.184 11 C 0.023 3.977 12 N -0.178 5.178 13 C -0.040 4.040 14 C -0.130 4.130 15 C 0.022 3.978 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.778 3.222 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.195 1.195 24 C -0.131 4.131 25 C -0.053 4.053 26 N -0.130 5.130 27 C -0.066 4.066 28 O -0.101 6.101 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.010 0.990 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.051 0.949 45 H 0.116 0.884 46 H 0.131 0.869 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.981 11.257 1.780 29.289 hybrid contribution 0.662 -0.618 -0.001 0.905 sum -26.319 10.639 1.779 28.443 Atomic orbital electron populations 1.21830 0.89451 1.04827 1.04187 1.23269 0.98348 0.79113 1.03055 1.86526 1.09380 1.31631 1.88839 1.21915 0.82037 0.87029 1.01687 1.23060 0.86033 0.98619 1.11209 1.70670 1.18982 1.10655 1.14893 1.19967 0.80934 0.85597 1.10242 1.19788 0.82887 0.89161 1.10168 1.74460 1.09838 1.10458 1.17364 1.74745 0.97974 1.23144 1.22531 1.22581 0.90885 0.83295 1.00958 1.58855 0.95195 1.48445 1.15269 1.22054 0.96118 0.90175 0.95656 1.21495 0.89859 1.01078 1.00610 1.18708 0.93769 0.93206 0.92119 1.21505 0.93597 1.09315 1.32231 0.92385 1.25726 1.02594 0.94928 0.95350 1.70000 1.36349 1.14474 1.34949 0.85713 0.80671 0.77765 0.78080 1.19797 1.21510 1.19542 1.21563 0.91004 1.00113 1.00460 1.22273 0.97194 1.00846 0.85010 1.46114 1.03376 1.10401 1.53071 1.22556 1.05220 0.72725 1.06077 1.84441 1.15942 1.38233 1.71464 0.90803 0.88023 0.90759 0.91090 0.91028 0.74744 0.94840 0.91432 0.91161 0.93677 0.99023 0.93145 0.91257 0.91261 0.88862 0.94945 0.88414 0.86867 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 71.98 0.74 -0.11 16 2 C 0.04 0.41 6.44 71.98 0.46 0.87 16 3 O -0.25 -3.73 10.21 -68.40 -0.70 -4.42 16 4 C 0.17 3.19 7.93 67.14 0.53 3.72 16 5 C -0.05 -0.75 11.91 83.67 1.00 0.24 16 6 N -0.42 -8.91 9.63 -304.67 -2.93 -11.85 16 7 C 0.24 6.11 8.14 87.07 0.71 6.82 16 8 C 0.25 7.58 7.98 135.83 1.08 8.66 16 9 N -0.28 -10.13 12.24 -51.12 -0.63 -10.75 16 10 N -0.34 -13.15 11.66 -58.03 -0.68 -13.83 16 11 C 0.38 13.05 6.70 260.13 1.74 14.79 16 12 N -0.45 -15.79 4.62 -706.19 -3.26 -19.05 16 13 C 0.09 3.49 5.08 86.32 0.44 3.93 16 14 C -0.09 -4.24 5.12 30.65 0.16 -4.09 16 15 C 0.04 1.95 2.16 -11.46 -0.02 1.92 16 16 C -0.53 -27.96 8.56 25.60 0.22 -27.74 16 17 H 0.06 2.97 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.68 5.31 84.65 0.45 1.13 16 19 N -0.92 -52.39 11.37 21.45 0.24 -52.15 16 20 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C -0.09 -3.52 5.32 30.65 0.16 -3.36 16 25 C 0.07 2.44 5.39 86.32 0.47 2.91 16 26 N -0.44 -12.44 3.24 -540.57 -1.75 -14.19 16 27 C 0.07 1.45 10.69 127.77 1.37 2.81 16 28 O -0.21 -5.16 10.35 10.15 0.11 -5.06 16 29 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.24 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.03 1.46 8.05 -2.39 -0.02 1.44 16 36 H 0.07 2.63 8.10 -2.39 -0.02 2.61 16 37 H 0.07 3.71 6.17 -2.39 -0.01 3.69 16 38 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.09 2.54 8.10 -2.39 -0.02 2.52 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.11 1.89 6.97 -2.39 -0.02 1.88 16 47 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -67.09 390.36 2.91 -64.18 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.98 Total: 9.81 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 9.50 Total: 12.52 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -9.01 Total: -121.83 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.59 Total: -9.48 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.09 2.91 -64.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647675644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.889 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds