Wall clock time and date at job start Wed Apr 1 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00457 * 2 1 4 4 H 1.07995 * 120.00522 * 202.72456 * 3 2 1 5 5 C 1.38813 * 119.99890 * 22.72027 * 3 2 1 6 6 N 1.31623 * 119.99890 * 11.66141 * 5 3 2 7 7 Si 1.86795 * 120.00310 * 191.66147 * 5 3 2 8 8 H 1.48508 * 109.47248 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47496 * 119.99942 * 7 5 3 10 10 H 1.48500 * 109.47041 * 240.00311 * 7 5 3 11 11 C 1.46504 * 119.99879 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47114 * 269.99961 * 11 2 1 13 13 O 1.42901 * 109.47418 * 64.99915 * 12 11 2 14 14 C 1.42897 * 114.00178 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47255 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47491 * 64.99709 * 15 14 13 17 17 C 1.46498 * 119.99834 * 270.00324 * 16 15 14 18 18 C 1.34773 * 119.99966 * 89.99970 * 16 15 14 19 19 O 1.21698 * 120.00318 * 5.09400 * 18 16 15 20 20 C 1.46676 * 119.99575 * 185.09871 * 18 16 15 21 21 C 1.40335 * 126.56131 * 321.02349 * 20 18 16 22 22 N 1.31000 * 108.78067 * 180.02562 * 21 20 18 23 23 N 1.39906 * 109.55636 * 0.02562 * 22 21 20 24 24 N 1.40018 * 132.51578 * 180.02562 * 23 22 21 25 25 C 1.30830 * 120.65860 * 179.97438 * 24 23 22 26 26 C 1.39732 * 120.97475 * 0.26895 * 25 24 23 27 27 C 1.36561 * 119.93937 * 359.42601 * 26 25 24 28 28 C 1.36752 * 107.87550 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.46641 * 275.15006 * 1 2 3 30 30 H 1.08999 * 109.47181 * 35.14609 * 1 2 3 31 31 H 1.09001 * 109.47649 * 155.14934 * 1 2 3 32 32 H 0.96998 * 119.99737 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47210 * 149.99690 * 11 2 1 34 34 H 1.09002 * 109.47093 * 29.99629 * 11 2 1 35 35 H 1.09005 * 109.46805 * 304.99899 * 12 11 2 36 36 H 1.08998 * 109.47186 * 185.00418 * 12 11 2 37 37 H 1.09004 * 109.47332 * 59.99351 * 14 13 12 38 38 H 1.09000 * 109.46897 * 299.99673 * 14 13 12 39 39 H 1.09000 * 109.47517 * 304.99804 * 15 14 13 40 40 H 1.08994 * 109.47450 * 184.99708 * 15 14 13 41 41 H 1.08997 * 109.47655 * 264.93298 * 17 16 15 42 42 H 1.09006 * 109.47199 * 24.93440 * 17 16 15 43 43 H 1.08997 * 109.47316 * 144.92922 * 17 16 15 44 44 H 1.07996 * 125.61067 * 0.04551 * 21 20 18 45 45 H 1.08007 * 119.51434 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.02754 * 179.69881 * 26 25 24 47 47 H 1.08006 * 120.44298 * 180.26732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1668 1.2222 -0.3613 5 6 1.5365 2.3414 0.4643 6 7 0.3936 2.2649 1.1126 7 14 2.3334 4.0049 0.1692 8 1 3.6040 3.8198 -0.5770 9 1 1.4139 4.8608 -0.6227 10 1 2.6163 4.6565 1.4733 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 8 1.2060 -1.9945 2.0805 14 6 1.3324 -2.4179 3.4395 15 6 -0.0565 -2.6925 4.0194 16 7 -0.6646 -3.8244 3.3156 17 6 -1.4787 -3.5918 2.1201 18 6 -0.4751 -5.0797 3.7681 19 8 0.1226 -5.2667 4.8116 20 6 -0.9890 -6.2205 3.0026 21 6 -2.2131 -6.2855 2.3195 22 7 -2.3199 -7.4636 1.7566 23 7 -1.1803 -8.2236 2.0411 24 7 -0.7972 -9.5232 1.6880 25 6 0.3469 -10.0140 2.0900 26 6 1.2135 -9.2594 2.8851 27 6 0.8749 -7.9859 3.2433 28 6 -0.3494 -7.4609 2.8144 29 1 -0.3633 0.0923 1.0236 30 1 -0.3633 0.8403 -0.5916 31 1 -0.3634 -0.9325 -0.4319 32 1 -0.0347 3.0724 1.4373 33 1 3.1499 -1.1383 -0.5144 34 1 1.6083 -2.0282 -0.5147 35 1 2.9642 -0.9140 1.9811 36 1 3.0732 -2.6070 1.4426 37 1 1.8208 -1.6353 4.0201 38 1 1.9300 -3.3285 3.4822 39 1 -0.6830 -1.8091 3.8960 40 1 0.0327 -2.9293 5.0795 41 1 -2.5304 -3.5385 2.4013 42 1 -1.1793 -2.6532 1.6536 43 1 -1.3320 -4.4105 1.4156 44 1 -2.9463 -5.4943 2.2662 45 1 0.6237 -11.0189 1.8071 46 1 2.1522 -9.6815 3.2125 47 1 1.5405 -7.3938 3.8540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656863244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:52 Heat of formation + Delta-G solvation = 102.557810 kcal Electronic energy + Delta-G solvation = -30716.547344 eV Core-core repulsion = 26518.607461 eV Total energy + Delta-G solvation = -4197.939883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -42.21218 -39.68358 -38.19528 -37.43703 -35.63279 -34.92247 -33.62711 -31.78237 -31.44110 -30.59265 -29.18415 -27.94446 -26.49694 -25.71620 -25.12077 -24.27856 -23.01074 -22.80279 -21.82774 -20.30381 -19.48756 -18.39610 -17.68532 -17.01659 -16.78265 -16.48914 -16.14336 -16.07120 -15.68719 -15.38678 -15.03548 -14.62742 -14.52399 -13.99891 -13.78469 -13.72175 -13.34746 -13.11731 -13.00216 -12.92826 -12.71666 -12.28219 -12.20115 -11.91489 -11.75881 -11.41547 -11.35925 -11.24492 -10.93479 -10.85735 -10.82875 -10.73248 -10.48893 -10.06177 -10.03056 -9.91964 -9.88708 -9.78033 -8.91408 -8.64766 -8.49334 -8.41520 -6.66443 -5.65640 -3.11500 -0.15942 0.60478 1.02774 1.89516 2.56118 2.87641 3.22835 3.39230 3.46580 3.48147 3.77609 3.94497 4.10390 4.15079 4.29622 4.48916 4.54527 4.72273 4.84940 4.91136 5.26526 5.33384 5.38196 5.40535 5.46054 5.48086 5.56882 5.60843 5.63951 5.72553 5.81828 5.89687 5.98530 6.02948 6.14115 6.21870 6.28371 6.56732 6.59097 6.79706 6.92986 6.93329 7.03913 7.40756 7.50015 7.83091 7.88954 7.95810 8.16137 8.46307 9.31105 9.94694 10.45050 11.38310 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.002333 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.341351 B =11996.831213 C =12093.850826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.903 5.903 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.366 6.366 14 C 0.049 3.951 15 C 0.121 3.879 16 N -0.594 5.594 17 C 0.074 3.926 18 C 0.594 3.406 19 O -0.550 6.550 20 C -0.256 4.256 21 C 0.094 3.906 22 N -0.253 5.253 23 N -0.174 5.174 24 N -0.215 5.215 25 C 0.117 3.883 26 C -0.159 4.159 27 C -0.025 4.025 28 C 0.098 3.902 29 H 0.034 0.966 30 H 0.034 0.966 31 H -0.007 1.007 32 H 0.250 0.750 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.021 0.979 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.211 0.789 45 H 0.207 0.793 46 H 0.160 0.840 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -23.134 4.794 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.732 3.268 8 H -0.205 1.205 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.285 6.285 14 C -0.030 4.030 15 C -0.001 4.001 16 N -0.326 5.326 17 C -0.069 4.069 18 C 0.382 3.618 19 O -0.429 6.429 20 C -0.273 4.273 21 C -0.086 4.086 22 N -0.077 5.077 23 N -0.041 5.041 24 N -0.028 5.028 25 C -0.075 4.075 26 C -0.184 4.184 27 C -0.053 4.053 28 C -0.027 4.027 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.227 0.773 45 H 0.224 0.776 46 H 0.178 0.822 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.307 -24.067 3.950 24.498 hybrid contribution 1.867 1.797 1.043 2.793 sum -0.440 -22.270 4.993 22.827 Atomic orbital electron populations 1.20692 0.82248 0.94593 0.99440 1.43877 1.02122 1.00204 1.85667 1.19236 0.98135 0.85631 1.35378 0.91612 1.25014 0.97818 0.98327 0.98503 1.70093 1.18208 1.26673 1.39843 0.86238 0.78619 0.84641 0.77347 1.20462 1.21697 1.21863 1.20875 0.96325 0.88792 0.91438 1.23440 0.85330 0.96641 0.98048 1.87930 1.30174 1.87229 1.23135 1.22764 0.96705 0.97891 0.85607 1.21591 0.93696 0.88372 0.96431 1.47546 1.50742 1.05516 1.28750 1.22088 0.93738 1.04429 0.86672 1.16975 0.78983 0.81861 0.83934 1.90773 1.43581 1.85322 1.23208 1.19784 0.98913 0.95297 1.13322 1.24513 0.96604 0.94776 0.92687 1.77722 1.00814 1.03940 1.25258 1.50914 1.13046 1.07718 1.32376 1.75861 1.17506 0.90552 1.18834 1.24300 0.88857 1.01200 0.93189 1.21714 1.02302 0.94644 0.99789 1.21066 0.93128 0.95345 0.95739 1.19678 0.93699 0.92551 0.96798 0.94786 0.94703 0.98817 0.94004 0.92555 0.93965 0.93475 0.96117 0.92807 0.94321 0.88953 0.88702 0.92740 0.88607 0.91355 0.77299 0.77629 0.82207 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.32 8.61 59.85 0.52 4.83 16 2 N -0.60 -14.98 2.89 -181.12 -0.52 -15.50 16 3 C -0.25 -6.95 9.67 -15.06 -0.15 -7.10 16 4 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 6 N -0.90 -26.14 10.62 55.49 0.59 -25.55 16 7 Si 0.90 21.83 29.57 -169.99 -5.03 16.80 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.15 3.17 6.11 -4.04 -0.02 3.14 16 12 C 0.04 0.86 6.28 37.16 0.23 1.09 16 13 O -0.37 -6.89 8.82 -35.23 -0.31 -7.20 16 14 C 0.05 0.77 6.28 37.15 0.23 1.01 16 15 C 0.12 1.70 5.83 -4.04 -0.02 1.68 16 16 N -0.59 -7.98 2.84 -183.13 -0.52 -8.50 16 17 C 0.07 0.86 8.83 59.85 0.53 1.39 16 18 C 0.59 8.46 7.55 -12.86 -0.10 8.36 16 19 O -0.55 -9.07 16.64 5.19 0.09 -8.99 16 20 C -0.26 -3.32 5.36 -104.73 -0.56 -3.88 16 21 C 0.09 1.08 9.67 -17.12 -0.17 0.92 16 22 N -0.25 -3.39 12.61 30.75 0.39 -3.00 16 23 N -0.17 -2.26 5.25 32.44 0.17 -2.09 16 24 N -0.22 -2.29 11.96 30.60 0.37 -1.92 16 25 C 0.12 0.69 11.28 -17.42 -0.20 0.49 16 26 C -0.16 -0.89 10.04 -39.63 -0.40 -1.29 16 27 C -0.03 -0.23 10.09 -39.55 -0.40 -0.63 16 28 C 0.10 1.22 6.85 -84.06 -0.58 0.64 16 29 H 0.03 0.90 7.35 -51.93 -0.38 0.52 16 30 H 0.03 0.93 7.29 -51.93 -0.38 0.55 16 31 H -0.01 -0.15 7.83 -51.93 -0.41 -0.55 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 34 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 40 H 0.09 1.27 7.36 -51.93 -0.38 0.89 16 41 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 42 H 0.10 1.33 7.22 -51.93 -0.37 0.96 16 43 H 0.07 0.76 5.90 -51.93 -0.31 0.46 16 44 H 0.21 1.70 6.38 -52.49 -0.33 1.36 16 45 H 0.21 0.18 8.06 -52.48 -0.42 -0.24 16 46 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 47 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -36.29 393.64 -6.71 -43.00 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.70 Total: -3.59 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.17 Total: 10.62 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.47 Total: -56.58 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.22 Total: -16.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.29 -6.71 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656863244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.561 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds