Wall clock time and date at job start Wed Apr 1 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00457 * 2 1 4 4 H 1.07995 * 120.00522 * 202.72456 * 3 2 1 5 5 C 1.38813 * 119.99890 * 22.72027 * 3 2 1 6 6 N 1.31623 * 119.99890 * 11.66141 * 5 3 2 7 7 Si 1.86795 * 120.00310 * 191.66147 * 5 3 2 8 8 H 1.48508 * 109.47248 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47496 * 119.99942 * 7 5 3 10 10 H 1.48500 * 109.47041 * 240.00311 * 7 5 3 11 11 C 1.46504 * 119.99879 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47114 * 269.99961 * 11 2 1 13 13 O 1.42901 * 109.47418 * 64.99915 * 12 11 2 14 14 C 1.42897 * 114.00178 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47255 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47491 * 64.99709 * 15 14 13 17 17 C 1.46498 * 119.99834 * 270.00324 * 16 15 14 18 18 C 1.34773 * 119.99966 * 89.99970 * 16 15 14 19 19 O 1.21698 * 120.00318 * 5.09400 * 18 16 15 20 20 C 1.46676 * 119.99575 * 185.09871 * 18 16 15 21 21 C 1.40335 * 126.56131 * 321.02349 * 20 18 16 22 22 N 1.31000 * 108.78067 * 180.02562 * 21 20 18 23 23 N 1.39906 * 109.55636 * 0.02562 * 22 21 20 24 24 N 1.40018 * 132.51578 * 180.02562 * 23 22 21 25 25 C 1.30830 * 120.65860 * 179.97438 * 24 23 22 26 26 C 1.39732 * 120.97475 * 0.26895 * 25 24 23 27 27 C 1.36561 * 119.93937 * 359.42601 * 26 25 24 28 28 C 1.36752 * 107.87550 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.46641 * 275.15006 * 1 2 3 30 30 H 1.08999 * 109.47181 * 35.14609 * 1 2 3 31 31 H 1.09001 * 109.47649 * 155.14934 * 1 2 3 32 32 H 0.96998 * 119.99737 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47210 * 149.99690 * 11 2 1 34 34 H 1.09002 * 109.47093 * 29.99629 * 11 2 1 35 35 H 1.09005 * 109.46805 * 304.99899 * 12 11 2 36 36 H 1.08998 * 109.47186 * 185.00418 * 12 11 2 37 37 H 1.09004 * 109.47332 * 59.99351 * 14 13 12 38 38 H 1.09000 * 109.46897 * 299.99673 * 14 13 12 39 39 H 1.09000 * 109.47517 * 304.99804 * 15 14 13 40 40 H 1.08994 * 109.47450 * 184.99708 * 15 14 13 41 41 H 1.08997 * 109.47655 * 264.93298 * 17 16 15 42 42 H 1.09006 * 109.47199 * 24.93440 * 17 16 15 43 43 H 1.08997 * 109.47316 * 144.92922 * 17 16 15 44 44 H 1.07996 * 125.61067 * 0.04551 * 21 20 18 45 45 H 1.08007 * 119.51434 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.02754 * 179.69881 * 26 25 24 47 47 H 1.08006 * 120.44298 * 180.26732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1668 1.2222 -0.3613 5 6 1.5365 2.3414 0.4643 6 7 0.3936 2.2649 1.1126 7 14 2.3334 4.0049 0.1692 8 1 3.6040 3.8198 -0.5770 9 1 1.4139 4.8608 -0.6227 10 1 2.6163 4.6565 1.4733 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7111 1.4417 13 8 1.2060 -1.9945 2.0805 14 6 1.3324 -2.4179 3.4395 15 6 -0.0565 -2.6925 4.0194 16 7 -0.6646 -3.8244 3.3156 17 6 -1.4787 -3.5918 2.1201 18 6 -0.4751 -5.0797 3.7681 19 8 0.1226 -5.2667 4.8116 20 6 -0.9890 -6.2205 3.0026 21 6 -2.2131 -6.2855 2.3195 22 7 -2.3199 -7.4636 1.7566 23 7 -1.1803 -8.2236 2.0411 24 7 -0.7972 -9.5232 1.6880 25 6 0.3469 -10.0140 2.0900 26 6 1.2135 -9.2594 2.8851 27 6 0.8749 -7.9859 3.2433 28 6 -0.3494 -7.4609 2.8144 29 1 -0.3633 0.0923 1.0236 30 1 -0.3633 0.8403 -0.5916 31 1 -0.3634 -0.9325 -0.4319 32 1 -0.0347 3.0724 1.4373 33 1 3.1499 -1.1383 -0.5144 34 1 1.6083 -2.0282 -0.5147 35 1 2.9642 -0.9140 1.9811 36 1 3.0732 -2.6070 1.4426 37 1 1.8208 -1.6353 4.0201 38 1 1.9300 -3.3285 3.4822 39 1 -0.6830 -1.8091 3.8960 40 1 0.0327 -2.9293 5.0795 41 1 -2.5304 -3.5385 2.4013 42 1 -1.1793 -2.6532 1.6536 43 1 -1.3320 -4.4105 1.4156 44 1 -2.9463 -5.4943 2.2662 45 1 0.6237 -11.0189 1.8071 46 1 2.1522 -9.6815 3.2125 47 1 1.5405 -7.3938 3.8540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656863244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:51 Heat of formation + Delta-G solvation = 77.453272 kcal Electronic energy + Delta-G solvation = -30717.635958 eV Core-core repulsion = 26518.607461 eV Total energy + Delta-G solvation = -4199.028498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -43.00327 -40.72707 -39.03592 -38.79217 -37.20922 -36.34440 -34.32688 -33.46517 -32.44931 -31.72542 -30.34360 -29.44336 -27.77897 -27.52678 -25.79382 -25.23993 -24.75317 -23.76559 -22.81957 -22.10810 -20.44984 -19.22922 -18.73829 -18.34926 -17.91013 -17.59082 -17.15499 -17.10113 -16.85862 -16.72200 -16.38513 -16.16989 -15.36003 -15.29324 -15.15961 -15.12338 -14.58381 -14.43429 -14.07894 -13.83976 -13.70420 -13.54045 -13.47148 -13.17030 -12.98544 -12.87805 -12.70631 -12.60000 -12.56769 -12.41159 -12.24156 -11.97739 -11.96318 -11.75974 -11.68452 -11.54304 -11.03090 -10.79308 -10.60091 -10.36980 -9.70959 -9.26747 -8.70005 -7.75384 -5.23160 -0.81083 -0.05919 0.31121 0.99692 1.47278 1.48914 1.58438 1.76951 1.98878 2.26799 2.54206 2.92718 3.10613 3.29160 3.37124 3.43364 3.57496 3.77780 3.78890 3.99966 4.11362 4.17071 4.20494 4.31223 4.34795 4.44153 4.53745 4.55364 4.62969 4.66562 4.68830 4.78439 4.84666 4.87598 4.94981 5.00472 5.07532 5.08391 5.15393 5.18373 5.42962 5.49870 5.69897 5.89558 6.14590 6.32384 6.35358 6.39112 6.48934 7.09617 7.22550 7.95139 8.40139 9.27135 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.002333 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.341351 B =11996.831213 C =12093.850826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.612 5.612 3 C -0.261 4.261 4 H 0.070 0.930 5 C -0.053 4.053 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.267 1.267 9 H -0.293 1.293 10 H -0.295 1.295 11 C 0.150 3.850 12 C 0.053 3.947 13 O -0.381 6.381 14 C 0.051 3.949 15 C 0.127 3.873 16 N -0.595 5.595 17 C 0.077 3.923 18 C 0.598 3.402 19 O -0.580 6.580 20 C -0.291 4.291 21 C 0.105 3.895 22 N -0.291 5.291 23 N -0.189 5.189 24 N -0.256 5.256 25 C 0.133 3.867 26 C -0.118 4.118 27 C -0.065 4.065 28 C 0.095 3.905 29 H 0.009 0.991 30 H 0.006 0.994 31 H 0.021 0.979 32 H 0.245 0.755 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.234 0.766 45 H 0.263 0.737 46 H 0.210 0.790 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -25.590 4.366 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.335 5.335 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.248 4.248 6 N -0.579 5.579 7 Si 0.793 3.207 8 H -0.192 1.192 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.024 3.976 12 C -0.026 4.026 13 O -0.300 6.300 14 C -0.027 4.027 15 C 0.004 3.996 16 N -0.325 5.325 17 C -0.065 4.065 18 C 0.388 3.612 19 O -0.462 6.462 20 C -0.308 4.308 21 C -0.075 4.075 22 N -0.116 5.116 23 N -0.054 5.054 24 N -0.069 5.069 25 C -0.058 4.058 26 C -0.143 4.143 27 C -0.093 4.093 28 C -0.032 4.032 29 H 0.027 0.973 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.250 0.750 45 H 0.278 0.722 46 H 0.227 0.773 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.706 -26.551 3.492 26.788 hybrid contribution 1.508 2.289 1.162 2.977 sum 0.803 -24.262 4.653 24.717 Atomic orbital electron populations 1.20376 0.82472 0.94680 0.97575 1.44093 1.02341 1.01263 1.85814 1.19556 0.98307 0.86732 1.34502 0.91245 1.25746 0.98595 1.01555 0.98917 1.70257 1.19516 1.27019 1.41085 0.85250 0.78067 0.80511 0.76881 1.19164 1.21993 1.22190 1.21048 0.96656 0.87267 0.92644 1.23199 0.85698 0.97094 0.96591 1.87912 1.30158 1.87383 1.24540 1.22835 0.97907 0.97696 0.84229 1.21489 0.92764 0.88650 0.96702 1.47587 1.50736 1.05194 1.29002 1.22124 0.94981 1.03272 0.86153 1.17119 0.78359 0.82176 0.83546 1.90737 1.45180 1.85743 1.24496 1.19714 1.00173 0.95547 1.15334 1.24840 0.96490 0.94755 0.91451 1.77592 1.02258 1.04794 1.26917 1.51072 1.12985 1.08612 1.32745 1.75914 1.20138 0.89881 1.20948 1.25376 0.86863 1.02745 0.90823 1.22337 1.03136 0.92559 0.96258 1.21286 0.92672 0.97382 0.97944 1.20113 0.94581 0.92375 0.96119 0.97250 0.97538 0.96017 0.94576 0.91383 0.92393 0.96007 0.93051 0.93236 0.93953 0.89210 0.88119 0.89934 0.90840 0.90860 0.75025 0.72207 0.77271 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.68 8.61 127.77 1.10 10.78 16 2 N -0.61 -30.66 2.89 -726.94 -2.10 -32.76 16 3 C -0.26 -14.25 9.67 84.03 0.81 -13.44 16 4 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.05 -2.97 5.13 84.86 0.44 -2.53 16 6 N -0.93 -55.09 10.62 21.65 0.23 -54.86 16 7 Si 0.96 45.20 29.57 68.60 2.03 47.23 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 11 C 0.15 6.01 6.11 86.38 0.53 6.53 16 12 C 0.05 1.99 6.28 71.98 0.45 2.45 16 13 O -0.38 -14.29 8.82 -148.98 -1.31 -15.60 16 14 C 0.05 1.64 6.28 71.98 0.45 2.09 16 15 C 0.13 3.60 5.83 86.38 0.50 4.10 16 16 N -0.59 -16.04 2.84 -851.52 -2.42 -18.46 16 17 C 0.08 1.78 8.83 127.77 1.13 2.91 16 18 C 0.60 17.24 7.55 86.45 0.65 17.89 16 19 O -0.58 -19.49 16.64 -4.34 -0.07 -19.56 16 20 C -0.29 -7.63 5.36 -19.93 -0.11 -7.73 16 21 C 0.10 2.43 9.67 85.33 0.83 3.25 16 22 N -0.29 -7.93 12.61 -56.63 -0.71 -8.65 16 23 N -0.19 -4.85 5.25 -51.29 -0.27 -5.12 16 24 N -0.26 -5.00 11.96 -57.11 -0.68 -5.69 16 25 C 0.13 1.03 11.28 85.20 0.96 1.99 16 26 C -0.12 -0.84 10.04 22.24 0.22 -0.61 16 27 C -0.07 -1.10 10.09 22.29 0.22 -0.87 16 28 C 0.10 2.33 6.85 39.42 0.27 2.60 16 29 H 0.01 0.50 7.35 -2.39 -0.02 0.49 16 30 H 0.01 0.32 7.29 -2.39 -0.02 0.31 16 31 H 0.02 0.93 7.83 -2.39 -0.02 0.91 16 32 H 0.24 14.11 8.31 -92.71 -0.77 13.33 16 33 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 34 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 35 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 2.59 8.07 -2.39 -0.02 2.57 16 40 H 0.10 2.74 7.36 -2.39 -0.02 2.72 16 41 H 0.08 1.42 7.35 -2.39 -0.02 1.40 16 42 H 0.07 2.06 7.22 -2.38 -0.02 2.04 16 43 H 0.07 1.63 5.90 -2.39 -0.01 1.61 16 44 H 0.23 3.69 6.38 -2.91 -0.02 3.68 16 45 H 0.26 -1.12 8.06 -2.91 -0.02 -1.15 16 46 H 0.21 -0.61 8.06 -2.91 -0.02 -0.63 16 47 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -81.95 393.64 4.14 -77.82 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.98 Total: 6.23 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 8.46 Total: 29.42 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.95 Total: -125.53 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.39 Total: -35.16 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -81.95 4.14 -77.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656863244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.271 kcal (2) G-P(sol) polarization free energy of solvation -81.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds