Wall clock time and date at job start Wed Apr 1 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00275 * 2 1 4 4 C 1.52998 * 109.47312 * 270.00537 * 3 2 1 5 5 N 1.46906 * 109.47222 * 180.02562 * 4 3 2 6 6 C 1.46895 * 111.00057 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99956 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99958 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00052 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99831 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99932 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99480 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 120.00191 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47434 * 89.99875 * 14 12 10 16 16 H 1.48499 * 109.47119 * 209.99643 * 14 12 10 17 17 H 1.48498 * 109.47025 * 329.99328 * 14 12 10 18 18 C 1.34777 * 119.99858 * 180.02562 * 2 1 3 19 19 O 1.21279 * 120.00166 * 180.02562 * 18 2 1 20 20 C 1.50706 * 120.00142 * 359.97438 * 18 2 1 21 21 H 1.08993 * 109.46700 * 59.99973 * 20 18 2 22 22 C 1.52997 * 109.47051 * 300.00187 * 20 18 2 23 23 C 1.52996 * 109.47131 * 179.97438 * 22 20 18 24 24 C 1.53002 * 109.46972 * 60.00459 * 23 22 20 25 25 C 1.52997 * 109.46817 * 299.99733 * 24 23 22 26 26 C 1.52999 * 109.46957 * 180.02562 * 20 18 2 27 27 F 1.39897 * 109.47437 * 60.00211 * 26 20 18 28 28 F 1.39903 * 109.47051 * 299.99385 * 26 20 18 29 29 H 1.08999 * 109.46510 * 269.99790 * 1 2 3 30 30 H 1.08994 * 109.46914 * 29.99478 * 1 2 3 31 31 H 1.08996 * 109.47264 * 149.99614 * 1 2 3 32 32 H 1.09002 * 109.47055 * 30.00737 * 3 2 1 33 33 H 1.09004 * 109.47419 * 150.00116 * 3 2 1 34 34 H 1.09002 * 109.46880 * 299.99202 * 4 3 2 35 35 H 1.08996 * 109.47025 * 60.00079 * 4 3 2 36 36 H 1.00905 * 110.99495 * 303.94802 * 5 4 3 37 37 H 1.08998 * 109.46888 * 299.99673 * 6 5 4 38 38 H 1.09004 * 109.47349 * 59.99307 * 6 5 4 39 39 H 0.96999 * 120.00372 * 0.02562 * 9 7 6 40 40 H 0.97008 * 119.99827 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.47289 * 59.99688 * 22 20 18 42 42 H 1.09000 * 109.47611 * 300.00260 * 22 20 18 43 43 H 1.08996 * 109.47452 * 300.00000 * 23 22 20 44 44 H 1.09000 * 109.47054 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.47070 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47407 * 59.99513 * 24 23 22 47 47 H 1.09001 * 109.47502 * 300.00518 * 25 24 23 48 48 H 1.09001 * 109.47289 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9823 -1.4424 6 6 3.4503 3.4386 -2.8138 7 6 4.2036 4.7432 -2.7736 8 8 4.4928 5.2438 -1.7073 9 7 4.5559 5.3535 -3.9224 10 6 5.2408 6.5407 -3.8858 11 1 5.4983 6.9865 -2.9364 12 6 5.6045 7.1697 -5.0701 13 7 6.2605 8.3078 -5.0350 14 14 5.1598 6.3983 -6.7122 15 1 3.8295 6.8939 -7.1478 16 1 6.1812 6.7668 -7.7250 17 1 5.1151 4.9209 -6.5691 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1673 -0.0001 20 6 1.3854 -2.4724 -0.0005 21 1 0.7584 -2.5298 -0.8902 22 6 0.5062 -2.5537 1.2490 23 6 -0.2593 -3.8784 1.2487 24 6 0.7346 -5.0416 1.2479 25 6 1.6137 -4.9604 -0.0016 26 6 2.3796 -3.6353 -0.0005 27 9 3.1839 -3.5612 1.1417 28 9 3.1838 -3.5612 -1.1429 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 1.6086 2.0283 0.5140 33 1 3.1500 1.1383 0.5138 34 1 3.0416 0.9508 -1.9563 35 1 1.5001 1.8408 -1.9562 36 1 2.6920 3.6863 -0.9162 37 1 4.0456 2.6909 -3.3377 38 1 2.5045 3.5815 -3.3366 39 1 4.3243 4.9534 -4.7751 40 1 6.5142 8.7472 -5.8618 41 1 -0.2021 -1.7251 1.2495 42 1 1.1331 -2.4961 2.1388 43 1 -0.8863 -3.9355 0.3590 44 1 -0.8859 -3.9361 2.1387 45 1 0.1892 -5.9854 1.2481 46 1 1.3616 -4.9845 2.1376 47 1 0.9868 -5.0174 -0.8914 48 1 2.3215 -5.7893 -0.0025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664093699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:15 Heat of formation + Delta-G solvation = -166.103922 kcal Electronic energy + Delta-G solvation = -31094.615292 eV Core-core repulsion = 26434.336175 eV Total energy + Delta-G solvation = -4660.279116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.14956 -47.10672 -40.54335 -38.48369 -37.86641 -36.51480 -35.12459 -33.86919 -32.27076 -31.63874 -30.54244 -29.69183 -27.33483 -26.23111 -24.42506 -23.63948 -23.14222 -22.17711 -20.66423 -19.79860 -19.32407 -18.32000 -17.69719 -17.61570 -17.16784 -16.53765 -16.36543 -15.96335 -15.63958 -15.55027 -14.98798 -14.84836 -14.61448 -14.35762 -14.01399 -13.85660 -13.80147 -13.69781 -13.60560 -13.40664 -13.25117 -13.06692 -12.97840 -12.60143 -12.56419 -12.41291 -12.32995 -12.07050 -11.97977 -11.88558 -11.64214 -11.44816 -11.33733 -11.22561 -11.06528 -10.76635 -10.57711 -9.98882 -9.95434 -9.55326 -9.05753 -8.56394 -8.18640 -8.13189 -6.29100 -3.80421 2.26273 2.48002 3.05038 3.08057 3.16535 3.31016 3.49918 3.75890 3.76853 3.83017 4.11726 4.18793 4.23539 4.35447 4.37229 4.47405 4.55285 4.62350 4.74111 4.81774 4.83614 4.96534 4.99621 5.05437 5.11035 5.15385 5.24086 5.27544 5.30523 5.32791 5.36503 5.45077 5.48592 5.60423 5.68607 5.75659 5.83139 5.88357 5.97466 6.17490 6.95740 7.06396 7.56592 7.60416 7.82312 8.16547 8.61866 8.96947 9.44465 9.84725 10.84030 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.001844 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.013616 B =15180.917083 C =15582.081779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.613 5.613 3 C 0.117 3.883 4 C 0.047 3.953 5 N -0.665 5.665 6 C 0.051 3.949 7 C 0.450 3.550 8 O -0.564 6.564 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.515 3.485 19 O -0.509 6.509 20 C -0.150 4.150 21 H 0.122 0.878 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.159 4.159 26 C 0.313 3.687 27 F -0.188 7.188 28 F -0.192 7.192 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.350 0.650 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.095 0.905 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.115 -29.397 9.809 37.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C -0.005 4.005 4 C -0.083 4.083 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.236 3.764 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C 0.301 3.699 19 O -0.382 6.382 20 C -0.172 4.172 21 H 0.140 0.860 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.197 4.197 26 C 0.276 3.724 27 F -0.169 7.169 28 F -0.172 7.172 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.169 0.831 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.481 -29.149 10.495 36.596 hybrid contribution -1.049 -0.086 -1.940 2.207 sum -20.529 -29.235 8.555 36.733 Atomic orbital electron populations 1.22026 0.79606 1.03468 1.01964 1.47712 1.06886 1.05996 1.74145 1.21445 0.98471 0.83508 0.97126 1.22271 0.96141 0.93203 0.96723 1.59919 1.51368 1.04993 1.13495 1.21690 0.99123 0.97077 0.90338 1.19687 0.85214 0.86718 0.84773 1.90566 1.58071 1.66627 1.29285 1.42203 1.52275 1.22338 1.06210 1.19440 1.30994 0.96080 0.96810 0.86256 1.25040 0.97104 0.96022 0.98045 1.69626 1.38262 1.15955 1.28301 0.86664 0.79170 0.79342 0.84192 1.19690 1.20148 1.19458 1.20185 0.87997 0.84824 0.76865 1.90836 1.13259 1.86762 1.47362 1.22452 0.98330 0.92748 1.03678 0.85972 1.21850 0.98707 0.99772 0.95921 1.21610 0.97763 0.93364 1.03165 1.21559 0.97646 0.99447 0.97326 1.22580 1.00249 0.95338 1.01551 1.20578 0.83315 0.96092 0.72433 1.93022 1.75813 1.97312 1.50765 1.93054 1.76024 1.97322 1.50849 0.91842 0.90597 0.90888 0.90206 0.88410 0.90703 0.95590 0.83080 0.89413 0.93790 0.79692 0.91632 0.88906 0.90173 0.91137 0.90437 0.90226 0.90641 0.88684 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 8.80 59.85 0.53 0.86 16 2 N -0.61 -5.62 2.87 -181.57 -0.52 -6.14 16 3 C 0.12 1.31 5.67 -4.04 -0.02 1.28 16 4 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 5 N -0.66 -10.79 6.13 -115.06 -0.71 -11.49 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.45 10.55 7.82 -10.99 -0.09 10.46 16 8 O -0.56 -15.52 15.78 5.54 0.09 -15.43 16 9 N -0.59 -14.44 5.09 -10.96 -0.06 -14.50 16 10 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 11 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.10 13.96 55.50 0.77 -25.32 16 14 Si 0.88 19.70 27.74 -169.99 -4.71 14.99 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 18 C 0.52 5.89 6.84 -10.98 -0.08 5.82 16 19 O -0.51 -8.41 14.41 5.56 0.08 -8.33 16 20 C -0.15 -1.13 1.38 -91.77 -0.13 -1.26 16 21 H 0.12 0.62 7.40 -51.93 -0.38 0.24 16 22 C -0.13 -0.60 4.72 -26.73 -0.13 -0.73 16 23 C -0.12 -0.35 5.92 -26.73 -0.16 -0.51 16 24 C -0.12 -0.47 5.80 -26.73 -0.16 -0.62 16 25 C -0.16 -0.87 5.46 -26.71 -0.15 -1.01 16 26 C 0.31 2.98 1.37 -26.71 -0.04 2.95 16 27 F -0.19 -2.32 15.11 2.25 0.03 -2.29 16 28 F -0.19 -2.46 16.14 2.25 0.04 -2.42 16 29 H 0.06 0.20 6.95 -51.93 -0.36 -0.16 16 30 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.07 0.21 6.01 -51.93 -0.31 -0.11 16 32 H 0.08 0.72 8.07 -51.93 -0.42 0.31 16 33 H 0.10 1.37 7.42 -51.93 -0.39 0.99 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.37 7.95 5.76 -40.82 -0.24 7.72 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.29 4.53 -51.93 -0.24 0.05 16 42 H 0.08 0.52 7.80 -51.93 -0.41 0.11 16 43 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.37 7.80 -51.93 -0.41 -0.04 16 47 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -37.86 386.79 -7.12 -44.98 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.25 Total: 9.37 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.71 Total: 10.77 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.51 Total: -57.46 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.86 -7.12 -44.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664093699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.129 kcal (2) G-P(sol) polarization free energy of solvation -37.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds