Wall clock time and date at job start Wed Apr 1 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 120.00275 * 2 1 4 4 C 1.52998 * 109.47312 * 270.00537 * 3 2 1 5 5 N 1.46906 * 109.47222 * 180.02562 * 4 3 2 6 6 C 1.46895 * 111.00057 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99956 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99958 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00052 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99831 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99932 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99480 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 120.00191 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47434 * 89.99875 * 14 12 10 16 16 H 1.48499 * 109.47119 * 209.99643 * 14 12 10 17 17 H 1.48498 * 109.47025 * 329.99328 * 14 12 10 18 18 C 1.34777 * 119.99858 * 180.02562 * 2 1 3 19 19 O 1.21279 * 120.00166 * 180.02562 * 18 2 1 20 20 C 1.50706 * 120.00142 * 359.97438 * 18 2 1 21 21 H 1.08993 * 109.46700 * 59.99973 * 20 18 2 22 22 C 1.52997 * 109.47051 * 300.00187 * 20 18 2 23 23 C 1.52996 * 109.47131 * 179.97438 * 22 20 18 24 24 C 1.53002 * 109.46972 * 60.00459 * 23 22 20 25 25 C 1.52997 * 109.46817 * 299.99733 * 24 23 22 26 26 C 1.52999 * 109.46957 * 180.02562 * 20 18 2 27 27 F 1.39897 * 109.47437 * 60.00211 * 26 20 18 28 28 F 1.39903 * 109.47051 * 299.99385 * 26 20 18 29 29 H 1.08999 * 109.46510 * 269.99790 * 1 2 3 30 30 H 1.08994 * 109.46914 * 29.99478 * 1 2 3 31 31 H 1.08996 * 109.47264 * 149.99614 * 1 2 3 32 32 H 1.09002 * 109.47055 * 30.00737 * 3 2 1 33 33 H 1.09004 * 109.47419 * 150.00116 * 3 2 1 34 34 H 1.09002 * 109.46880 * 299.99202 * 4 3 2 35 35 H 1.08996 * 109.47025 * 60.00079 * 4 3 2 36 36 H 1.00905 * 110.99495 * 303.94802 * 5 4 3 37 37 H 1.08998 * 109.46888 * 299.99673 * 6 5 4 38 38 H 1.09004 * 109.47349 * 59.99307 * 6 5 4 39 39 H 0.96999 * 120.00372 * 0.02562 * 9 7 6 40 40 H 0.97008 * 119.99827 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.47289 * 59.99688 * 22 20 18 42 42 H 1.09000 * 109.47611 * 300.00260 * 22 20 18 43 43 H 1.08996 * 109.47452 * 300.00000 * 23 22 20 44 44 H 1.09000 * 109.47054 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.47070 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47407 * 59.99513 * 24 23 22 47 47 H 1.09001 * 109.47502 * 300.00518 * 25 24 23 48 48 H 1.09001 * 109.47289 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9823 -1.4424 6 6 3.4503 3.4386 -2.8138 7 6 4.2036 4.7432 -2.7736 8 8 4.4928 5.2438 -1.7073 9 7 4.5559 5.3535 -3.9224 10 6 5.2408 6.5407 -3.8858 11 1 5.4983 6.9865 -2.9364 12 6 5.6045 7.1697 -5.0701 13 7 6.2605 8.3078 -5.0350 14 14 5.1598 6.3983 -6.7122 15 1 3.8295 6.8939 -7.1478 16 1 6.1812 6.7668 -7.7250 17 1 5.1151 4.9209 -6.5691 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1673 -0.0001 20 6 1.3854 -2.4724 -0.0005 21 1 0.7584 -2.5298 -0.8902 22 6 0.5062 -2.5537 1.2490 23 6 -0.2593 -3.8784 1.2487 24 6 0.7346 -5.0416 1.2479 25 6 1.6137 -4.9604 -0.0016 26 6 2.3796 -3.6353 -0.0005 27 9 3.1839 -3.5612 1.1417 28 9 3.1838 -3.5612 -1.1429 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 1.6086 2.0283 0.5140 33 1 3.1500 1.1383 0.5138 34 1 3.0416 0.9508 -1.9563 35 1 1.5001 1.8408 -1.9562 36 1 2.6920 3.6863 -0.9162 37 1 4.0456 2.6909 -3.3377 38 1 2.5045 3.5815 -3.3366 39 1 4.3243 4.9534 -4.7751 40 1 6.5142 8.7472 -5.8618 41 1 -0.2021 -1.7251 1.2495 42 1 1.1331 -2.4961 2.1388 43 1 -0.8863 -3.9355 0.3590 44 1 -0.8859 -3.9361 2.1387 45 1 0.1892 -5.9854 1.2481 46 1 1.3616 -4.9845 2.1376 47 1 0.9868 -5.0174 -0.8914 48 1 2.3215 -5.7893 -0.0025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664093699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:12 Heat of formation + Delta-G solvation = -196.088482 kcal Electronic energy + Delta-G solvation = -31095.915520 eV Core-core repulsion = 26434.336175 eV Total energy + Delta-G solvation = -4661.579344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.94811 -47.95046 -41.31200 -40.33739 -38.36865 -37.57910 -36.31912 -35.78935 -33.78098 -32.85456 -30.98327 -30.69139 -28.24122 -27.43642 -25.75385 -24.50694 -23.81312 -23.07833 -21.36888 -21.09264 -20.57241 -20.20156 -18.38976 -18.33179 -17.94766 -17.89260 -17.29298 -16.99640 -16.93898 -16.66336 -16.31141 -15.75524 -15.38529 -15.30056 -15.27476 -14.85757 -14.77982 -14.76662 -14.39125 -14.28579 -14.25364 -14.16971 -14.03194 -13.81202 -13.57538 -13.41764 -13.18214 -12.99992 -12.96734 -12.77501 -12.52491 -12.44617 -12.43740 -12.10670 -11.99972 -11.85239 -11.58503 -11.53667 -11.25500 -10.74974 -10.51171 -10.27660 -9.78613 -9.40266 -8.43342 -6.04637 1.29263 1.33660 1.43273 1.46079 1.75822 1.91236 2.21380 2.68858 2.73099 2.97568 3.12625 3.22336 3.31855 3.44928 3.71099 3.91286 3.98533 4.02326 4.05392 4.07321 4.12066 4.23174 4.29434 4.32022 4.36858 4.41308 4.50850 4.55438 4.66614 4.72198 4.80718 4.83906 4.92022 4.95190 5.00240 5.07351 5.20187 5.26467 5.39763 5.44492 5.50486 5.84421 5.96877 6.23952 6.36097 6.56853 6.84850 7.03537 7.36153 7.92184 8.74231 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.001844 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.013616 B =15180.917083 C =15582.081779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.606 5.606 3 C 0.120 3.880 4 C 0.058 3.942 5 N -0.689 5.689 6 C 0.065 3.935 7 C 0.448 3.552 8 O -0.614 6.614 9 N -0.589 5.589 10 C -0.331 4.331 11 H 0.055 0.945 12 C -0.015 4.015 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.253 1.253 16 H -0.275 1.275 17 H -0.235 1.235 18 C 0.504 3.496 19 O -0.576 6.576 20 C -0.141 4.141 21 H 0.156 0.844 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.152 4.152 26 C 0.289 3.711 27 F -0.214 7.214 28 F -0.218 7.218 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.351 0.649 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.390 0.610 40 H 0.280 0.720 41 H 0.117 0.883 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.121 0.879 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.738 -32.151 7.706 41.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.339 5.339 3 C -0.003 4.003 4 C -0.071 4.071 5 N -0.323 5.323 6 C -0.067 4.067 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.231 5.231 10 C -0.460 4.460 11 H 0.073 0.927 12 C -0.214 4.214 13 N -0.573 5.573 14 Si 0.786 3.214 15 H -0.177 1.177 16 H -0.200 1.200 17 H -0.158 1.158 18 C 0.292 3.708 19 O -0.454 6.454 20 C -0.163 4.163 21 H 0.173 0.827 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.190 4.190 26 C 0.253 3.747 27 F -0.195 7.195 28 F -0.199 7.199 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.170 0.830 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.075 0.925 47 H 0.139 0.861 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.174 -31.927 8.406 40.919 hybrid contribution 0.429 0.837 -1.132 1.472 sum -23.745 -31.090 7.274 39.791 Atomic orbital electron populations 1.22431 0.76226 1.05489 1.03922 1.47807 1.08817 1.04530 1.72724 1.21272 0.97694 0.85194 0.96183 1.22188 0.96628 0.90685 0.97644 1.59851 1.53103 1.06249 1.13077 1.21583 1.00114 0.93304 0.91714 1.20920 0.83895 0.88049 0.83578 1.90543 1.59652 1.68413 1.31191 1.42020 1.52236 1.21229 1.07621 1.19020 1.33452 0.98446 0.95075 0.92656 1.26137 0.96027 0.96203 1.03034 1.69807 1.39371 1.17922 1.30213 0.85348 0.79417 0.80092 0.76566 1.17685 1.19971 1.15830 1.20997 0.87575 0.86597 0.75648 1.90804 1.16273 1.87795 1.50546 1.22544 0.97865 0.89380 1.06470 0.82667 1.21915 0.98344 1.02225 0.93326 1.21637 0.97348 0.91149 1.05148 1.21610 0.97552 1.01265 0.95547 1.22633 1.00206 0.92503 1.03615 1.21438 0.83204 0.99355 0.70727 1.92962 1.76818 1.97606 1.52110 1.92991 1.77076 1.97623 1.52191 0.89886 0.89299 0.88250 0.87752 0.92397 0.92785 0.92339 0.83000 0.87882 0.89712 0.77446 0.91075 0.86516 0.92667 0.88573 0.88942 0.87968 0.92537 0.86108 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 8.80 127.77 1.12 1.42 16 2 N -0.61 -10.05 2.87 -846.76 -2.43 -12.48 16 3 C 0.12 2.60 5.67 86.38 0.49 3.09 16 4 C 0.06 1.38 6.01 86.30 0.52 1.90 16 5 N -0.69 -21.71 6.13 -517.94 -3.17 -24.88 16 6 C 0.07 2.12 6.17 85.56 0.53 2.65 16 7 C 0.45 21.03 7.82 87.66 0.69 21.72 16 8 O -0.61 -35.18 15.78 -3.07 -0.05 -35.23 16 9 N -0.59 -28.67 5.09 -306.99 -1.56 -30.23 16 10 C -0.33 -19.84 10.16 84.04 0.85 -18.99 16 11 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 12 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 13 N -0.93 -57.01 13.96 21.66 0.30 -56.71 16 14 Si 0.97 39.47 27.74 68.60 1.90 41.37 16 15 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 18 C 0.50 11.38 6.84 87.66 0.60 11.98 16 19 O -0.58 -20.28 14.41 -3.03 -0.04 -20.32 16 20 C -0.14 -1.87 1.38 -11.54 -0.02 -1.88 16 21 H 0.16 0.96 7.40 -2.39 -0.02 0.94 16 22 C -0.12 -0.83 4.72 30.59 0.14 -0.68 16 23 C -0.12 -0.19 5.92 30.59 0.18 -0.01 16 24 C -0.12 -0.63 5.80 30.59 0.18 -0.45 16 25 C -0.15 -1.39 5.46 30.61 0.17 -1.22 16 26 C 0.29 5.48 1.37 30.61 0.04 5.53 16 27 F -0.21 -5.67 15.11 44.97 0.68 -4.99 16 28 F -0.22 -5.78 16.14 44.97 0.73 -5.06 16 29 H 0.08 0.15 6.95 -2.39 -0.02 0.13 16 30 H 0.09 0.29 8.07 -2.39 -0.02 0.27 16 31 H 0.10 0.01 6.01 -2.39 -0.01 0.00 16 32 H 0.10 1.71 8.07 -2.39 -0.02 1.69 16 33 H 0.06 1.73 7.42 -2.38 -0.02 1.71 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.35 10.89 8.43 -89.69 -0.76 10.14 16 37 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.39 15.70 5.76 -92.71 -0.53 15.17 16 40 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 41 H 0.12 0.21 4.53 -2.39 -0.01 0.20 16 42 H 0.05 0.68 7.80 -2.39 -0.02 0.66 16 43 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.06 0.51 7.80 -2.39 -0.02 0.49 16 47 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -93.86 386.79 1.96 -91.90 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.35 Total: 31.98 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 5.96 Total: 24.66 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -6.87 Total: -124.31 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -0.09 Total: -55.55 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 1.41 Total: -10.05 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.90 Total: 41.37 kcal Total: -93.86 1.96 -91.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664093699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.189 kcal (2) G-P(sol) polarization free energy of solvation -93.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds