Wall clock time and date at job start Wed Apr 1 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52996 * 109.47198 * 270.00278 * 3 2 1 5 5 N 1.46902 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.46961 * 111.00019 * 293.79772 * 5 4 3 7 7 C 1.53049 * 109.36601 * 176.81288 * 6 5 4 8 8 N 1.46959 * 109.36366 * 58.40081 * 7 6 5 9 9 C 1.46902 * 110.99891 * 176.81354 * 8 7 6 10 10 C 1.53001 * 109.47060 * 293.80067 * 9 8 7 11 11 C 1.53000 * 109.47222 * 179.97438 * 10 9 8 12 12 F 1.39894 * 109.47076 * 179.97438 * 11 10 9 13 13 C 1.46961 * 110.88036 * 300.68079 * 8 7 6 14 14 C 1.46959 * 111.00089 * 170.00248 * 5 4 3 15 15 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 16 16 O 1.21283 * 119.99649 * 179.97438 * 15 2 1 17 17 C 1.50697 * 119.99774 * 359.72768 * 15 2 1 18 18 S 1.81008 * 109.46759 * 180.02562 * 17 15 2 19 19 C 1.76198 * 99.99946 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00327 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99735 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47351 * 90.00094 * 23 21 19 25 25 H 1.48496 * 109.47299 * 210.00069 * 23 21 19 26 26 H 1.48507 * 109.47281 * 330.00181 * 23 21 19 27 27 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 28 28 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 29 29 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 30 30 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 31 31 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 32 32 H 1.08997 * 109.47172 * 299.99762 * 4 3 2 33 33 H 1.08998 * 109.47554 * 59.99767 * 4 3 2 34 34 H 1.09001 * 109.49042 * 296.78273 * 6 5 4 35 35 H 1.09002 * 109.48513 * 56.84349 * 6 5 4 36 36 H 1.09003 * 109.48897 * 298.43393 * 7 6 5 37 37 H 1.08992 * 109.48766 * 178.36977 * 7 6 5 38 38 H 1.09002 * 109.46938 * 53.79770 * 9 8 7 39 39 H 1.08995 * 109.46765 * 173.79990 * 9 8 7 40 40 H 1.09001 * 109.47233 * 300.00412 * 10 9 8 41 41 H 1.08999 * 109.47402 * 59.99805 * 10 9 8 42 42 H 1.08995 * 109.47050 * 300.00182 * 11 10 9 43 43 H 1.09008 * 109.46847 * 59.99813 * 11 10 9 44 44 H 1.09006 * 109.48720 * 299.35373 * 13 8 7 45 45 H 1.09002 * 109.48513 * 179.29000 * 13 8 7 46 46 H 1.09000 * 109.48354 * 303.15662 * 14 5 4 47 47 H 1.08997 * 109.48718 * 63.21854 * 14 5 4 48 48 H 1.09001 * 109.46809 * 299.99238 * 17 15 2 49 49 H 1.08993 * 109.47525 * 59.99679 * 17 15 2 50 50 H 0.97000 * 120.00223 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 2.3622 4.0664 -0.8889 7 6 3.1875 5.3540 -0.8327 8 7 3.6572 5.6911 -2.1838 9 6 4.3912 6.9636 -2.1837 10 6 3.4325 8.1053 -1.8398 11 6 4.1971 9.4306 -1.8391 12 9 3.3204 10.4745 -1.5251 13 6 4.4815 4.6076 -2.7373 14 6 3.6561 3.3201 -2.7935 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 0.0051 18 16 2.5616 -3.8481 0.0037 19 6 1.4416 -5.2082 0.0116 20 1 0.3763 -5.0305 0.0159 21 6 1.9283 -6.5081 0.0122 22 7 1.0916 -7.5242 0.0176 23 14 3.7708 -6.8155 0.0055 24 1 4.2647 -6.8941 1.4037 25 1 4.0568 -8.0942 -0.6931 26 1 4.4558 -5.7023 -0.6995 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 3.0415 0.9508 -1.9563 33 1 1.5001 1.8408 -1.9563 34 1 1.4901 4.2208 -1.5244 35 1 2.0370 3.7986 0.1165 36 1 4.0449 5.2080 -0.1755 37 1 2.5693 6.1657 -0.4495 38 1 5.1888 6.9229 -1.4418 39 1 4.8212 7.1350 -3.1705 40 1 2.6349 8.1459 -2.5815 41 1 3.0025 7.9339 -0.8530 42 1 4.9944 9.3896 -1.0970 43 1 4.6275 9.6022 -2.8258 44 1 5.3536 4.4532 -2.1017 45 1 4.8067 4.8754 -3.7426 46 1 4.2743 2.5082 -3.1767 47 1 2.7988 3.4661 -3.4506 48 1 0.7625 -2.5283 0.8979 49 1 0.7550 -2.5318 -0.8821 50 1 1.4317 -8.4326 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664763875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:32 Heat of formation + Delta-G solvation = -98.722579 kcal Electronic energy + Delta-G solvation = -27826.476697 eV Core-core repulsion = 23735.332631 eV Total energy + Delta-G solvation = -4091.144066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.55855 -41.03515 -40.29101 -37.60390 -36.37620 -34.67509 -33.78732 -31.98909 -31.82869 -29.90289 -27.99968 -27.86148 -26.83610 -24.99899 -24.80617 -23.04181 -22.15617 -20.78553 -20.65031 -19.55908 -18.15539 -17.74083 -17.32141 -17.21466 -17.01843 -16.87653 -16.54933 -16.24258 -16.04105 -15.89103 -15.71625 -15.50182 -15.17510 -14.95860 -14.79913 -14.69840 -14.44339 -14.16262 -13.93152 -13.62237 -13.35874 -13.26063 -13.13857 -13.12657 -13.01099 -12.68006 -12.62441 -12.46959 -12.28535 -12.08805 -12.03508 -11.87187 -11.72635 -11.58176 -11.38310 -11.17387 -10.95452 -10.52653 -9.79625 -9.44347 -9.27657 -9.00715 -8.51794 -6.22776 0.97500 1.30976 1.45624 1.51540 1.53796 2.03216 2.24802 2.67572 2.77899 2.86564 2.94510 3.57246 3.71741 3.82621 3.88189 3.90083 4.02045 4.05965 4.13473 4.15098 4.21840 4.28428 4.32227 4.37179 4.38806 4.41853 4.43987 4.48430 4.55461 4.66250 4.67539 4.75789 4.81576 4.83242 4.88949 4.91896 4.94755 4.98287 5.02717 5.10633 5.26306 5.49448 5.70498 5.89428 5.93885 6.10675 6.10962 6.12869 6.22965 6.93567 7.08394 8.60511 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.031761 B = 0.001589 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.372516 B =17616.037328 C =18137.860671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.126 3.874 4 C 0.054 3.946 5 N -0.548 5.548 6 C 0.054 3.946 7 C 0.056 3.944 8 N -0.548 5.548 9 C 0.060 3.940 10 C -0.143 4.143 11 C 0.058 3.942 12 F -0.239 7.239 13 C 0.063 3.937 14 C 0.059 3.941 15 C 0.531 3.469 16 O -0.559 6.559 17 C -0.106 4.106 18 S -0.179 6.179 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.048 3.952 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.238 1.238 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 34.816 -4.573 35.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.003 3.997 4 C -0.075 4.075 5 N -0.273 5.273 6 C -0.074 4.074 7 C -0.072 4.072 8 N -0.273 5.273 9 C -0.068 4.068 10 C -0.181 4.181 11 C 0.003 3.997 12 F -0.220 7.220 13 C -0.065 4.065 14 C -0.069 4.069 15 C 0.318 3.682 16 O -0.437 6.437 17 C -0.257 4.257 18 S 0.048 5.952 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.162 1.162 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.054 0.946 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.129 0.871 49 H 0.130 0.870 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.063 34.662 -4.572 35.197 hybrid contribution -1.070 -0.943 0.031 1.427 sum 2.993 33.718 -4.541 34.154 Atomic orbital electron populations 1.22122 0.76766 1.04728 1.03581 1.47811 1.08538 1.04688 1.73345 1.21411 0.97707 0.84054 0.96542 1.22245 0.96828 0.91163 0.97262 1.62053 1.39812 1.02480 1.22978 1.22289 0.94458 0.90004 1.00622 1.22224 0.98814 0.96890 0.89253 1.62158 1.39759 1.02924 1.22430 1.21974 0.94562 0.87951 1.02313 1.22078 0.99435 0.93223 1.03384 1.22120 0.90919 0.83029 1.03629 1.92734 1.72974 1.61249 1.95061 1.22113 0.94035 0.89703 1.00619 1.22142 0.98761 0.97250 0.88797 1.20067 0.87294 0.85386 0.75453 1.90688 1.15354 1.87406 1.50301 1.23288 1.01731 0.93570 1.07069 1.84738 1.13898 0.99015 1.97565 1.22442 0.94374 0.92466 1.58283 0.91896 1.25528 1.02632 0.94755 0.92872 1.70009 1.36734 0.99521 1.49125 0.85887 0.80335 0.80060 0.80214 1.18728 1.18269 1.16198 0.90769 0.88290 0.90737 0.87496 0.91566 0.92963 0.93529 0.93924 0.89044 0.94561 0.88825 0.93971 0.89292 0.90725 0.91068 0.89413 0.89045 0.94563 0.88786 0.90759 0.94108 0.87069 0.86982 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.24 127.77 1.31 2.43 16 2 N -0.61 -14.95 2.87 -846.76 -2.43 -17.38 16 3 C 0.13 2.67 5.34 86.38 0.46 3.13 16 4 C 0.05 1.12 5.28 86.30 0.46 1.57 16 5 N -0.55 -10.05 4.71 -895.72 -4.22 -14.27 16 6 C 0.05 0.75 5.41 86.31 0.47 1.21 16 7 C 0.06 0.70 5.41 86.31 0.47 1.16 16 8 N -0.55 -6.77 4.71 -895.70 -4.22 -10.99 16 9 C 0.06 0.49 4.96 86.30 0.43 0.92 16 10 C -0.14 -1.15 5.60 30.59 0.17 -0.98 16 11 C 0.06 0.41 7.55 71.98 0.54 0.96 16 12 F -0.24 -3.48 17.36 44.97 0.78 -2.70 16 13 C 0.06 0.86 5.61 86.31 0.48 1.34 16 14 C 0.06 0.98 5.61 86.31 0.48 1.47 16 15 C 0.53 18.70 7.69 87.65 0.67 19.38 16 16 O -0.56 -24.41 15.44 -3.04 -0.05 -24.46 16 17 C -0.11 -4.03 4.71 71.24 0.34 -3.69 16 18 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 19 C -0.53 -30.76 10.04 67.95 0.68 -30.08 16 20 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 21 C 0.05 2.80 5.50 84.86 0.47 3.26 16 22 N -0.92 -55.66 13.97 21.65 0.30 -55.36 16 23 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 29 H 0.07 1.27 6.44 -2.38 -0.02 1.26 16 30 H 0.11 1.56 6.42 -2.39 -0.02 1.54 16 31 H 0.07 1.81 7.42 -2.39 -0.02 1.79 16 32 H 0.05 1.40 8.03 -2.39 -0.02 1.38 16 33 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 1.06 6.34 -2.39 -0.02 1.05 16 36 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.92 6.34 -2.39 -0.02 0.91 16 38 H 0.04 0.34 8.12 -2.39 -0.02 0.32 16 39 H 0.09 0.56 8.03 -2.39 -0.02 0.54 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.63 6.49 -2.39 -0.02 0.62 16 42 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.09 1.00 8.07 -2.39 -0.02 0.98 16 46 H 0.07 1.34 8.07 -2.39 -0.02 1.32 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 49 H 0.11 3.92 7.39 -2.40 -0.02 3.90 16 50 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -75.21 408.20 -0.68 -75.89 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.87 Total: 10.30 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 7.43 Total: 2.08 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -10.57 Total: -98.00 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -75.21 -0.68 -75.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664763875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.832 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds