Wall clock time and date at job start Wed Apr 1 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 120.00005 * 2 1 4 4 N 1.34781 * 119.99764 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99407 * 179.72304 * 4 2 1 6 6 C 1.52997 * 109.47244 * 300.27547 * 5 4 2 7 7 C 1.53000 * 109.47185 * 60.27957 * 5 4 2 8 8 C 1.50706 * 109.46836 * 180.27869 * 5 4 2 9 9 O 1.21275 * 120.00022 * 145.00140 * 8 5 4 10 10 N 1.34776 * 119.99861 * 324.99916 * 8 5 4 11 11 C 1.46507 * 119.99982 * 180.02562 * 10 8 5 12 12 C 1.52994 * 109.46861 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.50306 * 304.99778 * 12 11 10 14 14 C 1.53192 * 109.50005 * 65.06679 * 12 11 10 15 15 N 1.46929 * 108.77409 * 174.58384 * 14 12 11 16 16 C 1.36935 * 120.62725 * 126.37073 * 15 14 12 17 17 H 1.08003 * 120.00446 * 331.82527 * 16 15 14 18 18 C 1.38820 * 119.99884 * 151.83241 * 16 15 14 19 19 N 1.31619 * 119.99740 * 343.07924 * 18 16 15 20 20 Si 1.86798 * 119.99931 * 163.08177 * 18 16 15 21 21 H 1.48500 * 109.46955 * 89.99855 * 20 18 16 22 22 H 1.48501 * 109.47157 * 209.99474 * 20 18 16 23 23 H 1.48502 * 109.47507 * 329.99814 * 20 18 16 24 24 C 1.46919 * 118.74114 * 306.39077 * 15 14 12 25 25 C 1.53190 * 108.77560 * 53.60706 * 24 15 14 26 26 C 1.53033 * 109.34188 * 305.38113 * 25 24 15 27 27 F 1.39896 * 109.43755 * 301.31410 * 26 25 24 28 28 F 1.39897 * 109.48617 * 181.35169 * 26 25 24 29 29 H 1.09002 * 109.46971 * 239.99533 * 1 2 3 30 30 H 1.08999 * 109.47153 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.46936 * 120.00262 * 1 2 3 32 32 H 0.96991 * 120.00262 * 0.02562 * 4 2 1 33 33 H 1.09005 * 109.47073 * 60.00749 * 6 5 4 34 34 H 1.09007 * 109.46975 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47205 * 299.99753 * 6 5 4 36 36 H 1.09006 * 109.46992 * 59.99833 * 7 5 4 37 37 H 1.09001 * 109.47218 * 179.97438 * 7 5 4 38 38 H 1.08998 * 109.47192 * 299.99775 * 7 5 4 39 39 H 0.96999 * 120.00150 * 0.02562 * 10 8 5 40 40 H 1.09000 * 109.46850 * 300.00272 * 11 10 8 41 41 H 1.09000 * 109.47050 * 60.00294 * 11 10 8 42 42 H 1.09005 * 109.58565 * 294.37035 * 14 12 11 43 43 H 1.08999 * 109.59067 * 54.79707 * 14 12 11 44 44 H 0.97001 * 119.99939 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.58899 * 173.40013 * 24 15 14 46 46 H 1.09008 * 109.58813 * 293.82354 * 24 15 14 47 47 H 1.09000 * 109.49655 * 65.32401 * 25 24 15 48 48 H 1.09009 * 109.49903 * 185.41478 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 -0.0056 6 6 4.1507 -0.4435 -1.2555 7 6 4.1611 -0.4484 1.2429 8 6 4.1482 -2.5880 -0.0106 9 8 5.1590 -2.8718 -0.6178 10 7 3.4742 -3.5434 0.6599 11 6 3.9629 -4.9246 0.6555 12 6 3.0219 -5.8010 1.4845 13 1 2.9190 -5.3798 2.4846 14 6 1.6479 -5.8569 0.8094 15 7 0.7979 -6.8033 1.5447 16 6 -0.4330 -6.4214 2.0075 17 1 -0.6196 -5.3869 2.2554 18 6 -1.4410 -7.3639 2.1581 19 7 -1.3436 -8.5327 1.5609 20 14 -2.9356 -6.9732 3.2083 21 1 -3.9854 -6.3500 2.3629 22 1 -3.4614 -8.2265 3.8068 23 1 -2.5483 -6.0325 4.2902 24 6 1.2938 -8.1671 1.7744 25 6 2.6718 -8.0853 2.4386 26 6 3.5962 -7.2162 1.5829 27 9 3.6989 -7.7676 0.3013 28 9 4.8645 -7.1646 2.1709 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6959 -2.0072 0.0005 33 1 3.7874 0.5842 -1.2519 34 1 5.2407 -0.4431 -1.2598 35 1 3.7837 -0.9556 -2.1450 36 1 3.8015 -0.9641 2.1334 37 1 5.2511 -0.4488 1.2386 38 1 3.7978 0.5792 1.2465 39 1 2.6656 -3.3166 1.1452 40 1 3.9957 -5.2951 -0.3690 41 1 4.9638 -4.9572 1.0860 42 1 1.1919 -4.8670 0.8262 43 1 1.7606 -6.1921 -0.2217 44 1 -2.0481 -9.1912 1.6659 45 1 0.6043 -8.7015 2.4279 46 1 1.3778 -8.6907 0.8220 47 1 2.5721 -7.6431 3.4299 48 1 3.0931 -9.0867 2.5272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671971766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:54 Heat of formation + Delta-G solvation = -157.450022 kcal Electronic energy + Delta-G solvation = -32800.920613 eV Core-core repulsion = 28141.016758 eV Total energy + Delta-G solvation = -4659.903855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -48.60651 -46.55688 -40.92343 -39.31842 -37.52104 -35.70427 -35.21045 -32.77613 -32.33816 -30.95916 -30.30311 -29.18187 -27.47017 -26.22350 -25.28511 -23.64636 -22.44674 -21.47793 -20.98626 -19.83608 -19.55555 -18.52850 -17.17551 -16.95125 -16.84452 -16.28050 -15.74296 -15.63624 -15.44312 -15.30131 -15.12975 -14.86109 -14.28740 -14.08500 -13.95371 -13.65271 -13.43774 -13.35935 -13.19718 -12.91075 -12.86653 -12.83382 -12.60468 -12.41516 -12.30539 -12.17688 -11.95748 -11.77463 -11.69292 -11.63925 -11.48165 -11.32081 -10.89521 -10.73003 -10.63547 -10.31868 -10.16203 -10.02060 -9.83667 -9.60516 -9.47097 -9.21155 -8.69909 -6.98906 -6.02488 -3.47882 2.26278 2.41621 2.85310 2.96627 3.22855 3.31480 3.32192 4.09605 4.27823 4.33883 4.51123 4.57938 4.59636 4.75149 4.78078 4.80609 5.06897 5.11178 5.18758 5.19139 5.31766 5.39404 5.44085 5.51121 5.53371 5.56316 5.67847 5.69263 5.80357 5.88582 5.97173 6.05243 6.08908 6.14611 6.16665 6.20148 6.24096 6.33037 6.57012 7.01814 7.15706 7.27593 7.36844 7.55544 7.91257 8.00693 8.17597 8.93407 9.56168 10.11429 11.06550 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009296 B = 0.003911 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.327046 B = 7157.220088 C = 9624.543917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.519 3.481 3 O -0.540 6.540 4 N -0.729 5.729 5 C 0.162 3.838 6 C -0.150 4.150 7 C -0.160 4.160 8 C 0.516 3.484 9 O -0.525 6.525 10 N -0.720 5.720 11 C 0.123 3.877 12 C -0.156 4.156 13 H 0.102 0.898 14 C 0.154 3.846 15 N -0.589 5.589 16 C -0.265 4.265 17 H 0.068 0.932 18 C 0.009 3.991 19 N -0.897 5.897 20 Si 0.904 3.096 21 H -0.285 1.285 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.301 3.699 27 F -0.199 7.199 28 F -0.213 7.213 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.404 0.596 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.402 0.598 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.257 0.743 45 H 0.101 0.899 46 H 0.033 0.967 47 H 0.086 0.914 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 10.921 -0.279 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.307 3.693 3 O -0.417 6.417 4 N -0.385 5.385 5 C 0.073 3.927 6 C -0.208 4.208 7 C -0.218 4.218 8 C 0.300 3.700 9 O -0.400 6.400 10 N -0.373 5.373 11 C -0.001 4.001 12 C -0.178 4.178 13 H 0.120 0.880 14 C 0.026 3.974 15 N -0.311 5.311 16 C -0.394 4.394 17 H 0.086 0.914 18 C -0.191 4.191 19 N -0.540 5.540 20 Si 0.733 3.267 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.264 3.736 27 F -0.180 7.180 28 F -0.194 7.194 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.239 0.761 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.237 0.763 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.119 0.881 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.127 11.286 -0.738 13.368 hybrid contribution -1.252 -0.501 0.749 1.543 sum 5.875 10.785 0.011 12.281 Atomic orbital electron populations 1.21967 0.91147 1.05695 1.04911 1.20826 0.90658 0.83090 0.74705 1.90660 1.70580 1.31392 1.49053 1.46289 1.06040 1.09583 1.76607 1.20582 0.80419 0.92590 0.99157 1.22052 1.02357 1.01660 0.94753 1.22185 1.01966 1.02792 0.94853 1.20474 0.84402 0.86377 0.78718 1.90736 1.24687 1.81824 1.42766 1.46052 1.29434 1.08812 1.52988 1.21391 0.97412 0.79888 1.01393 1.22993 0.99267 0.92644 1.02892 0.87974 1.20900 0.87256 0.95240 0.93966 1.44069 1.16128 1.08542 1.62366 1.19101 0.87352 0.94769 1.38136 0.91383 1.25091 0.97475 0.97220 0.99294 1.70010 1.34174 1.07204 1.42630 0.86290 0.82616 0.77453 0.80323 1.21208 1.21414 1.20352 1.20841 0.88973 0.87121 0.98630 1.23277 0.99321 0.99099 1.00200 1.21012 0.79716 0.94742 0.78138 1.92969 1.96358 1.87347 1.41307 1.92961 1.44679 1.97407 1.84357 0.88896 0.88835 0.89073 0.76069 0.89630 0.90614 0.92232 0.91998 0.90987 0.89025 0.76264 0.90392 0.90788 0.91866 0.94873 0.93244 0.88127 0.94917 0.89565 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 10.32 36.01 0.37 -0.84 16 2 C 0.52 5.16 7.36 -10.98 -0.08 5.08 16 3 O -0.54 -7.07 13.29 5.56 0.07 -6.99 16 4 N -0.73 -6.74 4.86 -48.68 -0.24 -6.98 16 5 C 0.16 1.77 0.98 -132.97 -0.13 1.64 16 6 C -0.15 -1.73 7.93 37.16 0.29 -1.43 16 7 C -0.16 -1.66 8.39 37.16 0.31 -1.35 16 8 C 0.52 6.64 6.65 -10.98 -0.07 6.57 16 9 O -0.53 -8.61 16.10 5.56 0.09 -8.52 16 10 N -0.72 -8.42 5.03 -60.29 -0.30 -8.72 16 11 C 0.12 1.71 4.83 -4.04 -0.02 1.69 16 12 C -0.16 -2.35 2.03 -90.50 -0.18 -2.53 16 13 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.15 2.68 5.40 -3.71 -0.02 2.66 16 15 N -0.59 -12.76 2.99 -172.32 -0.52 -13.28 16 16 C -0.26 -6.31 9.58 -15.06 -0.14 -6.45 16 17 H 0.07 1.54 7.89 -52.48 -0.41 1.13 16 18 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 19 N -0.90 -23.78 11.20 55.49 0.62 -23.16 16 20 Si 0.90 19.57 29.59 -169.99 -5.03 14.54 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.17 3.64 5.10 -3.72 -0.02 3.62 16 25 C -0.18 -3.10 5.62 -26.62 -0.15 -3.25 16 26 C 0.30 5.02 1.63 -26.69 -0.04 4.98 16 27 F -0.20 -3.63 15.73 2.25 0.04 -3.59 16 28 F -0.21 -3.51 16.41 2.25 0.04 -3.48 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.40 3.15 7.24 -40.82 -0.30 2.86 16 33 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 34 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.03 6.18 -51.93 -0.32 0.71 16 39 H 0.40 3.93 6.44 -40.82 -0.26 3.67 16 40 H 0.08 1.18 7.97 -51.93 -0.41 0.77 16 41 H 0.07 1.08 7.63 -51.93 -0.40 0.68 16 42 H 0.06 0.97 7.14 -51.93 -0.37 0.60 16 43 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 44 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 45 H 0.10 2.40 6.06 -51.93 -0.31 2.08 16 46 H 0.03 0.76 7.92 -51.92 -0.41 0.35 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -29.91 385.22 -6.67 -36.58 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.28 Total: 7.28 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 0.03 Total: 10.51 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.43 Total: -52.13 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.16 Total: -15.51 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.07 Total: -7.07 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.91 -6.67 -36.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671971766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.869 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds