Wall clock time and date at job start Wed Apr 1 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 120.00005 * 2 1 4 4 N 1.34781 * 119.99764 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99407 * 179.72304 * 4 2 1 6 6 C 1.52997 * 109.47244 * 300.27547 * 5 4 2 7 7 C 1.53000 * 109.47185 * 60.27957 * 5 4 2 8 8 C 1.50706 * 109.46836 * 180.27869 * 5 4 2 9 9 O 1.21275 * 120.00022 * 145.00140 * 8 5 4 10 10 N 1.34776 * 119.99861 * 324.99916 * 8 5 4 11 11 C 1.46507 * 119.99982 * 180.02562 * 10 8 5 12 12 C 1.52994 * 109.46861 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.50306 * 304.99778 * 12 11 10 14 14 C 1.53192 * 109.50005 * 65.06679 * 12 11 10 15 15 N 1.46929 * 108.77409 * 174.58384 * 14 12 11 16 16 C 1.36935 * 120.62725 * 126.37073 * 15 14 12 17 17 H 1.08003 * 120.00446 * 331.82527 * 16 15 14 18 18 C 1.38820 * 119.99884 * 151.83241 * 16 15 14 19 19 N 1.31619 * 119.99740 * 343.07924 * 18 16 15 20 20 Si 1.86798 * 119.99931 * 163.08177 * 18 16 15 21 21 H 1.48500 * 109.46955 * 89.99855 * 20 18 16 22 22 H 1.48501 * 109.47157 * 209.99474 * 20 18 16 23 23 H 1.48502 * 109.47507 * 329.99814 * 20 18 16 24 24 C 1.46919 * 118.74114 * 306.39077 * 15 14 12 25 25 C 1.53190 * 108.77560 * 53.60706 * 24 15 14 26 26 C 1.53033 * 109.34188 * 305.38113 * 25 24 15 27 27 F 1.39896 * 109.43755 * 301.31410 * 26 25 24 28 28 F 1.39897 * 109.48617 * 181.35169 * 26 25 24 29 29 H 1.09002 * 109.46971 * 239.99533 * 1 2 3 30 30 H 1.08999 * 109.47153 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.46936 * 120.00262 * 1 2 3 32 32 H 0.96991 * 120.00262 * 0.02562 * 4 2 1 33 33 H 1.09005 * 109.47073 * 60.00749 * 6 5 4 34 34 H 1.09007 * 109.46975 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47205 * 299.99753 * 6 5 4 36 36 H 1.09006 * 109.46992 * 59.99833 * 7 5 4 37 37 H 1.09001 * 109.47218 * 179.97438 * 7 5 4 38 38 H 1.08998 * 109.47192 * 299.99775 * 7 5 4 39 39 H 0.96999 * 120.00150 * 0.02562 * 10 8 5 40 40 H 1.09000 * 109.46850 * 300.00272 * 11 10 8 41 41 H 1.09000 * 109.47050 * 60.00294 * 11 10 8 42 42 H 1.09005 * 109.58565 * 294.37035 * 14 12 11 43 43 H 1.08999 * 109.59067 * 54.79707 * 14 12 11 44 44 H 0.97001 * 119.99939 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.58899 * 173.40013 * 24 15 14 46 46 H 1.09008 * 109.58813 * 293.82354 * 24 15 14 47 47 H 1.09000 * 109.49655 * 65.32401 * 25 24 15 48 48 H 1.09009 * 109.49903 * 185.41478 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 -0.0056 6 6 4.1507 -0.4435 -1.2555 7 6 4.1611 -0.4484 1.2429 8 6 4.1482 -2.5880 -0.0106 9 8 5.1590 -2.8718 -0.6178 10 7 3.4742 -3.5434 0.6599 11 6 3.9629 -4.9246 0.6555 12 6 3.0219 -5.8010 1.4845 13 1 2.9190 -5.3798 2.4846 14 6 1.6479 -5.8569 0.8094 15 7 0.7979 -6.8033 1.5447 16 6 -0.4330 -6.4214 2.0075 17 1 -0.6196 -5.3869 2.2554 18 6 -1.4410 -7.3639 2.1581 19 7 -1.3436 -8.5327 1.5609 20 14 -2.9356 -6.9732 3.2083 21 1 -3.9854 -6.3500 2.3629 22 1 -3.4614 -8.2265 3.8068 23 1 -2.5483 -6.0325 4.2902 24 6 1.2938 -8.1671 1.7744 25 6 2.6718 -8.0853 2.4386 26 6 3.5962 -7.2162 1.5829 27 9 3.6989 -7.7676 0.3013 28 9 4.8645 -7.1646 2.1709 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 1.6959 -2.0072 0.0005 33 1 3.7874 0.5842 -1.2519 34 1 5.2407 -0.4431 -1.2598 35 1 3.7837 -0.9556 -2.1450 36 1 3.8015 -0.9641 2.1334 37 1 5.2511 -0.4488 1.2386 38 1 3.7978 0.5792 1.2465 39 1 2.6656 -3.3166 1.1452 40 1 3.9957 -5.2951 -0.3690 41 1 4.9638 -4.9572 1.0860 42 1 1.1919 -4.8670 0.8262 43 1 1.7606 -6.1921 -0.2217 44 1 -2.0481 -9.1912 1.6659 45 1 0.6043 -8.7015 2.4279 46 1 1.3778 -8.6907 0.8220 47 1 2.5721 -7.6431 3.4299 48 1 3.0931 -9.0867 2.5272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671971766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:52 Heat of formation + Delta-G solvation = -177.058673 kcal Electronic energy + Delta-G solvation = -32801.770908 eV Core-core repulsion = 28141.016758 eV Total energy + Delta-G solvation = -4660.754150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -49.98592 -47.94224 -41.87139 -40.27573 -38.97552 -36.63728 -36.51491 -34.36441 -33.14511 -32.34180 -31.94442 -29.81680 -28.36938 -27.52251 -26.95433 -24.77587 -23.92201 -22.84312 -21.92641 -21.14903 -20.58771 -19.50429 -18.77798 -18.29199 -17.90400 -17.38613 -17.08336 -16.94599 -16.69727 -16.34236 -16.19952 -16.12025 -15.60773 -15.37564 -15.08399 -14.80774 -14.77478 -14.60378 -14.51172 -14.26169 -14.00395 -13.79931 -13.52816 -13.39999 -13.24521 -13.22392 -13.17044 -13.03571 -13.01896 -12.97703 -12.75412 -12.53954 -12.34543 -12.28929 -12.16860 -11.88216 -11.62835 -11.43468 -11.16597 -10.57817 -10.53536 -10.33372 -10.26570 -8.77046 -7.87687 -5.34186 1.27412 1.52833 1.56975 1.64005 1.64198 1.81154 2.14353 2.52277 2.79516 3.16282 3.23927 3.28328 3.42693 3.53531 3.62133 3.80229 3.87402 3.93131 3.96880 4.08883 4.26280 4.49814 4.52354 4.56716 4.63275 4.66129 4.67797 4.71071 4.72718 4.77242 4.78084 4.84956 4.89860 5.05054 5.13247 5.16077 5.17864 5.21877 5.31607 5.32616 5.61731 5.70219 6.26952 6.37021 6.46146 6.95738 7.11281 7.20535 7.79668 8.32423 9.20557 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009296 B = 0.003911 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.327046 B = 7157.220088 C = 9624.543917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.574 6.574 4 N -0.721 5.721 5 C 0.166 3.834 6 C -0.146 4.146 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.561 6.561 10 N -0.707 5.707 11 C 0.134 3.866 12 C -0.140 4.140 13 H 0.120 0.880 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.260 4.260 17 H 0.085 0.915 18 C -0.045 4.045 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.265 1.265 24 C 0.178 3.822 25 C -0.169 4.169 26 C 0.298 3.702 27 F -0.210 7.210 28 F -0.208 7.208 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.414 0.586 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.018 0.982 44 H 0.250 0.750 45 H 0.073 0.927 46 H 0.003 0.997 47 H 0.099 0.901 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 12.421 0.904 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.306 3.694 3 O -0.454 6.454 4 N -0.378 5.378 5 C 0.077 3.923 6 C -0.204 4.204 7 C -0.213 4.213 8 C 0.306 3.694 9 O -0.438 6.438 10 N -0.360 5.360 11 C 0.009 3.991 12 C -0.161 4.161 13 H 0.138 0.862 14 C 0.028 3.972 15 N -0.326 5.326 16 C -0.390 4.390 17 H 0.103 0.897 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.189 1.189 24 C 0.051 3.949 25 C -0.209 4.209 26 C 0.262 3.738 27 F -0.191 7.191 28 F -0.189 7.189 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.250 0.750 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.252 0.748 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.118 0.882 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.876 12.804 0.461 14.541 hybrid contribution -1.129 -0.970 0.330 1.525 sum 5.747 11.833 0.792 13.179 Atomic orbital electron populations 1.21986 0.88451 1.06287 1.06381 1.21405 0.91867 0.82470 0.73649 1.90654 1.71483 1.32581 1.50660 1.46216 1.05200 1.10075 1.76282 1.20450 0.81520 0.91123 0.99223 1.21995 1.02096 1.01361 0.94979 1.22140 1.02020 1.02292 0.94846 1.20718 0.83771 0.86974 0.77921 1.90729 1.26348 1.82448 1.44311 1.45883 1.29642 1.07790 1.52692 1.21160 0.97043 0.80564 1.00335 1.22805 0.97666 0.91918 1.03705 0.86163 1.21006 0.87963 0.95404 0.92859 1.44293 1.16250 1.08995 1.63082 1.19562 0.87738 0.95292 1.36389 0.89712 1.25790 1.00151 0.97355 1.00814 1.70169 1.34891 1.08279 1.44744 0.85336 0.79697 0.76656 0.79048 1.21328 1.22880 1.18921 1.20541 0.90525 0.86900 0.96884 1.23103 0.97019 1.00400 1.00370 1.21081 0.79806 0.95463 0.77488 1.92956 1.96411 1.87644 1.42108 1.92971 1.44283 1.97414 1.84214 0.87201 0.88782 0.87618 0.75017 0.90095 0.91056 0.92644 0.90833 0.90952 0.89816 0.74789 0.91701 0.90913 0.89293 0.96441 0.94125 0.90904 0.97875 0.88212 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.32 71.24 0.74 -1.13 16 2 C 0.52 9.19 7.36 87.66 0.65 9.83 16 3 O -0.57 -14.35 13.29 -3.03 -0.04 -14.39 16 4 N -0.72 -11.65 4.86 -426.31 -2.07 -13.72 16 5 C 0.17 3.37 0.98 2.86 0.00 3.38 16 6 C -0.15 -3.26 7.93 71.98 0.57 -2.69 16 7 C -0.15 -2.94 8.39 71.98 0.60 -2.34 16 8 C 0.52 12.47 6.65 87.66 0.58 13.05 16 9 O -0.56 -17.81 16.10 -3.02 -0.05 -17.86 16 10 N -0.71 -14.66 5.03 -463.05 -2.33 -16.99 16 11 C 0.13 3.41 4.83 86.38 0.42 3.82 16 12 C -0.14 -3.84 2.03 -10.72 -0.02 -3.86 16 13 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 14 C 0.15 5.04 5.40 86.36 0.47 5.50 16 15 N -0.60 -25.42 2.99 -699.09 -2.09 -27.51 16 16 C -0.26 -11.96 9.58 84.04 0.81 -11.15 16 17 H 0.09 3.56 7.89 -2.91 -0.02 3.53 16 18 C -0.05 -2.23 4.92 84.86 0.42 -1.81 16 19 N -0.94 -50.48 11.20 21.65 0.24 -50.24 16 20 Si 0.96 39.72 29.59 68.60 2.03 41.75 16 21 H -0.29 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 C 0.18 7.61 5.10 86.36 0.44 8.05 16 25 C -0.17 -5.63 5.62 30.67 0.17 -5.46 16 26 C 0.30 9.43 1.63 30.62 0.05 9.48 16 27 F -0.21 -7.52 15.73 44.97 0.71 -6.81 16 28 F -0.21 -6.36 16.41 44.97 0.74 -5.62 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.41 5.16 7.24 -92.71 -0.67 4.49 16 33 H 0.08 1.90 6.16 -2.38 -0.01 1.89 16 34 H 0.07 1.64 7.87 -2.38 -0.02 1.62 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.78 6.18 -2.39 -0.01 1.77 16 39 H 0.41 6.61 6.44 -92.71 -0.60 6.01 16 40 H 0.06 1.87 7.97 -2.39 -0.02 1.85 16 41 H 0.07 1.95 7.63 -2.39 -0.02 1.93 16 42 H 0.09 2.42 7.14 -2.38 -0.02 2.41 16 43 H 0.02 0.64 7.92 -2.39 -0.02 0.62 16 44 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 45 H 0.07 3.54 6.06 -2.39 -0.01 3.52 16 46 H 0.00 0.15 7.92 -2.38 -0.02 0.13 16 47 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -64.81 385.22 2.75 -62.05 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.27 Total: 24.65 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 5.89 Total: 24.68 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -6.25 Total: -108.46 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.09 Total: -32.25 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 1.45 Total: -12.43 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -64.81 2.75 -62.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671971766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.006 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds