Wall clock time and date at job start Wed Apr 1 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00163 * 2 1 4 4 C 1.34773 * 119.99992 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00263 * 4.05469 * 4 2 1 6 6 C 1.47602 * 120.00189 * 184.05332 * 4 2 1 7 7 C 1.40287 * 120.48402 * 131.09670 * 6 4 2 8 8 C 1.36930 * 118.48670 * 180.02562 * 7 6 4 9 9 C 1.39278 * 119.37929 * 0.02562 * 8 7 6 10 10 N 1.38930 * 119.52867 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00388 * 22.00725 * 10 9 8 12 12 O 1.21566 * 119.99791 * 357.34420 * 11 10 9 13 13 N 1.34780 * 120.00193 * 177.33423 * 11 10 9 14 14 C 1.46962 * 120.59381 * 4.97000 * 13 11 10 15 15 C 1.53812 * 108.39744 * 124.75152 * 14 13 11 16 16 N 1.46970 * 108.57400 * 49.63947 * 15 14 13 17 17 C 1.36945 * 120.59154 * 124.62698 * 16 15 14 18 18 H 1.07997 * 119.99699 * 212.33311 * 17 16 15 19 19 C 1.38810 * 119.99860 * 32.32923 * 17 16 15 20 20 N 1.31612 * 120.00299 * 11.46323 * 19 17 16 21 21 Si 1.86807 * 119.99374 * 191.46373 * 19 17 16 22 22 H 1.48499 * 109.47248 * 90.00170 * 21 19 17 23 23 H 1.48503 * 109.46576 * 209.99762 * 21 19 17 24 24 H 1.48502 * 109.47252 * 329.99464 * 21 19 17 25 25 C 1.46960 * 118.81462 * 304.64080 * 16 15 14 26 26 C 1.46962 * 120.58986 * 185.24886 * 13 11 10 27 27 N 1.32533 * 120.93744 * 0.27123 * 9 8 7 28 28 C 1.31673 * 121.64936 * 359.43536 * 27 9 8 29 29 H 1.08997 * 109.47612 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47068 * 300.00047 * 1 2 3 31 31 H 1.09003 * 109.47429 * 59.99411 * 1 2 3 32 32 H 1.08994 * 109.47047 * 266.37253 * 3 2 1 33 33 H 1.08996 * 109.46814 * 26.37296 * 3 2 1 34 34 H 1.09002 * 109.46774 * 146.37292 * 3 2 1 35 35 H 1.08001 * 120.75630 * 0.02562 * 7 6 4 36 36 H 1.07999 * 120.31140 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99911 * 202.28702 * 10 9 8 38 38 H 1.08996 * 109.61120 * 244.54103 * 14 13 11 39 39 H 1.09004 * 109.60827 * 5.05499 * 14 13 11 40 40 H 1.09003 * 109.74722 * 289.85445 * 15 14 13 41 41 H 1.08995 * 109.53303 * 169.30163 * 15 14 13 42 42 H 0.97006 * 119.99824 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.61309 * 295.48572 * 25 16 15 44 44 H 1.09004 * 109.75335 * 175.05377 * 25 16 15 45 45 H 1.08995 * 109.61198 * 354.94945 * 26 13 11 46 46 H 1.08998 * 109.60712 * 115.29241 * 26 13 11 47 47 H 1.08004 * 119.74223 * 180.26356 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5332 -2.2189 -0.0754 6 6 3.6120 -1.1689 0.0898 7 6 4.2674 -1.9964 1.0137 8 6 5.6355 -1.9650 1.0631 9 6 6.3310 -1.1192 0.2025 10 7 7.7191 -1.0852 0.2496 11 6 8.4018 -2.1278 0.7628 12 8 7.8019 -3.0770 1.2286 13 7 9.7495 -2.1181 0.7595 14 6 10.4879 -0.9334 0.3000 15 6 11.4508 -0.4979 1.4176 16 7 12.2083 -1.6741 1.8677 17 6 13.5777 -1.6646 1.8635 18 1 14.1235 -2.5777 1.6773 19 6 14.2642 -0.4813 2.0987 20 7 13.6198 0.5758 2.5453 21 14 16.1028 -0.3893 1.7810 22 1 16.3422 0.0405 0.3799 23 1 16.7173 0.5914 2.7115 24 1 16.7104 -1.7267 1.9994 25 6 11.4700 -2.8608 2.3219 26 6 10.5070 -3.2943 1.2096 27 7 5.6873 -0.3428 -0.6574 28 6 4.3733 -0.3461 -0.7416 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.4355 1.5509 -1.0255 33 1 1.5818 2.0437 0.4565 34 1 3.1202 1.1555 0.5691 35 1 3.7058 -2.6436 1.6711 36 1 6.1702 -2.5902 1.7628 37 1 8.1968 -0.3093 -0.0832 38 1 11.0536 -1.1806 -0.5983 39 1 9.7873 -0.1268 0.0839 40 1 10.8837 -0.0865 2.2527 41 1 12.1387 0.2551 1.0331 42 1 14.0996 1.4028 2.7093 43 1 10.9043 -2.6177 3.2213 44 1 12.1686 -3.6696 2.5366 45 1 9.8191 -4.0473 1.5941 46 1 11.0717 -3.7075 0.3738 47 1 3.8805 0.2962 -1.4565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673573424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:53 Heat of formation + Delta-G solvation = 40.251229 kcal Electronic energy + Delta-G solvation = -30199.900776 eV Core-core repulsion = 25999.259077 eV Total energy + Delta-G solvation = -4200.641699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.33275 -40.34397 -39.10180 -37.13709 -35.90096 -35.03885 -34.06747 -32.69236 -31.62998 -30.62115 -30.23468 -28.25555 -27.16372 -26.50391 -24.35817 -23.85901 -23.45749 -22.78421 -21.14105 -20.14878 -19.48294 -18.69540 -17.81779 -17.58106 -16.85173 -16.54686 -16.27580 -15.71021 -15.49413 -15.38540 -14.83436 -14.62543 -14.33135 -14.16794 -13.90161 -13.67020 -13.48961 -13.44641 -13.40373 -13.29135 -13.01204 -12.95433 -12.72780 -12.60877 -12.39419 -11.75495 -11.38079 -10.92877 -10.87764 -10.85372 -10.64046 -10.55574 -10.35384 -10.16188 -10.05519 -9.93990 -9.78113 -9.57886 -9.10375 -8.71935 -8.61151 -8.24163 -6.75739 -5.93969 -3.44506 0.60598 1.14700 2.35557 2.38838 2.63908 3.07719 3.28704 3.36293 3.37143 3.70370 3.74677 4.17520 4.29358 4.36651 4.63411 4.69193 4.78963 4.88401 4.95917 5.03877 5.14049 5.20082 5.25374 5.27924 5.44172 5.59009 5.61675 5.70504 5.72506 5.75009 5.87299 5.96522 6.01130 6.07037 6.14035 6.19412 6.31913 6.57326 6.69292 6.76737 6.86169 6.90557 7.10458 7.34979 7.58588 7.65935 7.79220 7.96582 8.30169 8.48293 9.04223 9.64548 10.23020 11.13727 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.001990 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.594114 B =14066.717858 C =14693.883910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.619 5.619 3 C 0.074 3.926 4 C 0.572 3.428 5 O -0.534 6.534 6 C -0.224 4.224 7 C -0.007 4.007 8 C -0.188 4.188 9 C 0.401 3.599 10 N -0.665 5.665 11 C 0.708 3.292 12 O -0.578 6.578 13 N -0.601 5.601 14 C 0.080 3.920 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.258 4.258 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.131 3.869 26 C 0.111 3.889 27 N -0.521 5.521 28 C 0.161 3.839 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.182 0.818 37 H 0.415 0.585 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.101 0.899 42 H 0.256 0.744 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 2.789 -5.687 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.353 5.353 3 C -0.069 4.069 4 C 0.360 3.640 5 O -0.411 6.411 6 C -0.231 4.231 7 C -0.033 4.033 8 C -0.211 4.211 9 C 0.169 3.831 10 N -0.314 5.314 11 C 0.410 3.590 12 O -0.457 6.457 13 N -0.336 5.336 14 C -0.045 4.045 15 C 0.033 3.967 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.004 3.996 26 C -0.013 4.013 27 N -0.236 5.236 28 C 0.002 3.998 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.159 0.841 36 H 0.199 0.801 37 H 0.255 0.745 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.119 0.881 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.724 2.231 -5.858 21.652 hybrid contribution 0.745 0.353 0.072 0.827 sum -19.980 2.583 -5.786 20.961 Atomic orbital electron populations 1.21708 0.78767 1.04369 1.01384 1.47634 1.07233 1.06307 1.74106 1.21988 0.97786 0.84978 1.02160 1.18155 0.86867 0.83336 0.75619 1.90792 1.69753 1.31066 1.49462 1.20639 0.93752 1.04229 1.04448 1.21249 0.93902 0.93476 0.94666 1.22500 0.94169 1.02441 1.01980 1.18254 0.83912 0.91509 0.89401 1.42588 1.03850 1.21356 1.63613 1.15684 0.82392 0.81764 0.79164 1.90738 1.67019 1.35643 1.52297 1.47333 1.02307 1.17859 1.66092 1.22829 0.95396 0.85491 1.00762 1.21249 0.92387 0.90814 0.92201 1.43914 1.02265 1.11453 1.73643 1.19197 0.81065 0.95548 1.42927 0.91504 1.25215 0.98177 0.97380 0.98488 1.69946 1.35335 1.02381 1.47093 0.86219 0.84839 0.77591 0.77652 1.21293 1.21633 1.20302 1.21341 0.93469 0.91572 0.93260 1.22242 0.94220 0.86013 0.98836 1.67112 1.10419 1.25135 1.20898 1.22619 0.87713 0.93992 0.95519 0.89415 0.92059 0.92076 0.92055 0.90609 0.90559 0.84072 0.80141 0.74502 0.91155 0.91975 0.95627 0.88067 0.93374 0.95644 0.91221 0.89553 0.91640 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.67 59.84 0.64 1.15 16 2 N -0.62 -5.11 3.27 -190.74 -0.62 -5.74 16 3 C 0.07 0.40 9.11 59.85 0.55 0.94 16 4 C 0.57 6.62 7.25 -12.44 -0.09 6.53 16 5 O -0.53 -8.02 16.37 5.28 0.09 -7.93 16 6 C -0.22 -2.56 4.89 -104.82 -0.51 -3.08 16 7 C -0.01 -0.08 9.82 -39.29 -0.39 -0.47 16 8 C -0.19 -2.62 8.78 -39.67 -0.35 -2.97 16 9 C 0.40 5.64 7.48 -154.92 -1.16 4.48 16 10 N -0.67 -9.46 5.31 -15.83 -0.08 -9.54 16 11 C 0.71 11.74 8.18 -86.91 -0.71 11.03 16 12 O -0.58 -10.60 12.46 5.31 0.07 -10.53 16 13 N -0.60 -10.11 2.94 -177.95 -0.52 -10.64 16 14 C 0.08 1.31 6.58 -3.37 -0.02 1.29 16 15 C 0.16 3.41 5.47 -3.36 -0.02 3.39 16 16 N -0.59 -13.61 2.95 -171.76 -0.51 -14.12 16 17 C -0.26 -6.57 9.57 -15.06 -0.14 -6.71 16 18 H 0.07 1.68 7.85 -52.49 -0.41 1.26 16 19 C 0.01 0.17 5.02 -17.43 -0.09 0.08 16 20 N -0.90 -24.53 11.14 55.49 0.62 -23.91 16 21 Si 0.91 20.48 29.57 -169.99 -5.03 15.46 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.13 2.57 6.67 -3.59 -0.02 2.54 16 26 C 0.11 1.89 6.60 -3.59 -0.02 1.86 16 27 N -0.52 -6.61 10.39 -12.07 -0.13 -6.74 16 28 C 0.16 1.70 8.94 -17.13 -0.15 1.55 16 29 H 0.09 0.71 6.91 -51.93 -0.36 0.36 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.25 7.16 -51.93 -0.37 -0.12 16 33 H 0.08 0.27 8.04 -51.93 -0.42 -0.15 16 34 H 0.08 0.47 6.19 -51.93 -0.32 0.15 16 35 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.18 2.79 5.26 -52.64 -0.28 2.51 16 37 H 0.42 5.21 6.30 -40.82 -0.26 4.95 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.84 5.62 -51.93 -0.29 0.55 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 2.39 6.11 -51.93 -0.32 2.08 16 42 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 45 H 0.09 1.42 6.99 -51.93 -0.36 1.05 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.16 1.22 6.35 -52.48 -0.33 0.89 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -31.93 376.71 -9.17 -41.10 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.23 Total: 5.27 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: -2.50 Total: 21.63 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.25 Total: -70.67 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.15 Total: -18.46 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.93 -9.17 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673573424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.347 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds